Mcix016038.1
Basic Information
- Insect
- Melitaea cinxia
- Gene Symbol
- -
- Assembly
- GCA_905220565.1
- Location
- HG992233.1:9253832-9256172[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.5e-10 1.7e-07 31.6 0.2 4 39 16 51 15 57 0.85 2 2 4.5 1.3e+03 -0.1 0.0 28 44 244 261 243 262 0.88
Sequence Information
- Coding Sequence
- ATGGAACCTCCTTCAAAAAAACGTCGAGGACTTTGGTCACTTCAACAATTACGAGCTGCAATGACTGCAGTTCAAGACGGACTGATGTCGCAGCGTGCTGCAGCTGCATATTATTCTATACCCAGAAGAACTTTGGTAAACCATTTAAAATCTGGAAAAGTCGAAAAACAAATAGGACGACGTACGATTTTAACACCAGAACAAGAAAATGATTTGGCGTTAAGGATTAAAAAACTTGCCTCCATAGGATTTTCTTTAACGCCTAATGTTATTCGCCATCAAGCTTTTCTATTTTGTGATCAACAGAAAATTCCTAACAATTTTAATCAAACTTCAAAGCTAGCTGGTAAAGATTGGTTAAAATTATTTTTAAAAAGACATCCCGATATATCAAGGCGCAAGGTTCAAATCTTAAACCCAGGACGAGCGCAGAAACTAAATAAGCACATTGTTATGCAGCATTTTACTGAATATAAGAAAATTTACGATGAACTGGAGATAGGGCGACATCCGCAGCGCTTATATAATATGGATGAAAAAGGCTGCCGTCTCACGATTCATAACCAGCCAGTAGTATTGGCACAAAAAGGCATTAAAAGAGTCCATATGGTTGCACCAGAGCATGCAGAGAATGTTACTGTGGCTGTATGTGTAAATGCTTTAGGCAATCCAATACCGCCAATGATATTATTCAAAGGTAAAAGGTTAAAGCCTGAGTTTAATGACAATTTACCTGCAGGATCACTTGTGAAAATGGCAAAGAAAGGCAGTATGACTTCATCATTATTTGTAGATTTCATACATCACTTGGGAAAATATAAAGCCGCTGGAACGTGTCTTCTTGTATTTGATGGCGCTTCATGTCACTTAGATTATAGTATTGTTGAAGCAGCCGACCATCACGATATTGTATTATATTGCTTGCCGTCAAATACTACGCACGAGCTCCAGCCGCTGGATAAAAATGCAATACCACAAGAAGCCTACGCACCTTCTATATTGACTGAAAAACAAATAGCACCAGACAACGTGACGACAGAAAACATTCAATCGTTGCAAAGACCTTTAGAAGCCTGTCCTAGTTCAATAAATTTAGCAAAGACATCACAAAATCTTGCTGATGATCGTCCACATTCTGAGAAGACAGTTTTTGATCAAAATAGTAATATGCCTTTGGAAAATTCGCCAACTCCTGGTCCTAGTGGTATAAATTACCGGCATGTAGTGAAAAGTCCCGATGTTAGTAGTTTAGATTCTGACATGACCTTTTTTGACGATCATTACACATATTCACCATCTTTGTTACATCAGAATGACTTTTCACCCGCTTTAACTACGACAGCGGTAAAAACACTTTTAGTTGATTACAGCTCATCTGATTCTGATCTTGCAAATTCAAACTCACTAACAGGACTAAGCCAGTATGCTGCATCGATAAGAAGACTAATAATTGATAGCTCTGAATCTGATACTTTTATTGCAGAATCACTTGTTCCGCGACAAAATTTTACGTCTCAAAATATCCGTGATGTATACAGTTCCTTTGTTGATGAAAATGTAGATCCAATATCAAGGCAAGAACAAACTCCCAAGAAGAATACAGCATATACTGACTTCTACAGTATAAGACAAGTACGTGATGGCTCTACAACAGCAAGTGATTCTGAAGACAACTTGCCACTATCGATAATAAAAGCCAAAAAAGTCATAAAGTCTCCATTTCAGGAGCTGATACCGACGCCGAATTTAGCTGTGGTGAAACAAAATAAGCCAAGACGTAAGGCCGTCAATTATAAAGCACGGATTGTAACCAAATATTTGTTTGCTGAAAAAGTTAATGAAAAACACCAACGTGAGAAAAAAACAAATAATGAACTGCCACAGCAGGCAAAGGTAAGGACGAAAGGATGTCCAAAAACATTTCGTCCTATTCGAAGAAATAAAGAAAAGAAACAATTTAAAGGACAGGAATTAAAAAATAGAAAACAGAAACGGACACTAAATGACACTTTTGACAAATGGTACTGTCATGCTTGTAATACAGAGAGTTTTAAAGACATGCGACAGTGTCCAATATGTCAAAAATGGTTCCATGAAGAATGCGTGGGCCTGACAAAAGATGATATTGATTTTCAATGCCCTATGTGCAATTAG
- Protein Sequence
- MEPPSKKRRGLWSLQQLRAAMTAVQDGLMSQRAAAAYYSIPRRTLVNHLKSGKVEKQIGRRTILTPEQENDLALRIKKLASIGFSLTPNVIRHQAFLFCDQQKIPNNFNQTSKLAGKDWLKLFLKRHPDISRRKVQILNPGRAQKLNKHIVMQHFTEYKKIYDELEIGRHPQRLYNMDEKGCRLTIHNQPVVLAQKGIKRVHMVAPEHAENVTVAVCVNALGNPIPPMILFKGKRLKPEFNDNLPAGSLVKMAKKGSMTSSLFVDFIHHLGKYKAAGTCLLVFDGASCHLDYSIVEAADHHDIVLYCLPSNTTHELQPLDKNAIPQEAYAPSILTEKQIAPDNVTTENIQSLQRPLEACPSSINLAKTSQNLADDRPHSEKTVFDQNSNMPLENSPTPGPSGINYRHVVKSPDVSSLDSDMTFFDDHYTYSPSLLHQNDFSPALTTTAVKTLLVDYSSSDSDLANSNSLTGLSQYAASIRRLIIDSSESDTFIAESLVPRQNFTSQNIRDVYSSFVDENVDPISRQEQTPKKNTAYTDFYSIRQVRDGSTTASDSEDNLPLSIIKAKKVIKSPFQELIPTPNLAVVKQNKPRRKAVNYKARIVTKYLFAEKVNEKHQREKKTNNELPQQAKVRTKGCPKTFRPIRRNKEKKQFKGQELKNRKQKRTLNDTFDKWYCHACNTESFKDMRQCPICQKWFHEECVGLTKDDIDFQCPMCN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00984991;
- 90% Identity
- iTF_00984991; iTF_00985011; iTF_00984990;
- 80% Identity
- -