Maur011514.1
Basic Information
- Insect
- Meliscaeva auricollis
- Gene Symbol
- -
- Assembly
- GCA_948107695.1
- Location
- OX403616.1:14720998-14723738[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00052 0.049 14.5 0.1 2 23 28 49 27 49 0.97 2 17 0.24 22 6.1 5.0 1 23 55 78 55 78 0.89 3 17 0.005 0.47 11.4 0.3 3 23 83 104 81 104 0.93 4 17 0.0035 0.33 11.9 0.1 2 21 113 132 112 133 0.92 5 17 0.00016 0.015 16.1 1.1 1 23 141 163 141 163 0.97 6 17 0.0019 0.18 12.7 2.0 1 23 169 191 169 191 0.97 7 17 0.00029 0.027 15.3 2.6 1 23 197 219 197 219 0.95 8 17 4.5 4.2e+02 2.1 5.5 3 22 227 246 225 246 0.92 9 17 0.048 4.5 8.3 2.7 1 23 529 552 529 552 0.98 10 17 0.66 62 4.7 1.9 1 23 576 598 576 598 0.89 11 17 0.54 50 5.0 1.8 1 23 606 630 606 630 0.92 12 17 0.0001 0.0096 16.7 0.9 1 23 634 656 634 656 0.98 13 17 0.00073 0.068 14.0 0.3 2 22 668 688 667 688 0.93 14 17 0.0043 0.4 11.6 0.2 3 23 698 718 696 718 0.92 15 17 7.6e-06 0.00071 20.3 1.6 1 23 724 747 724 747 0.97 16 17 3.5e-05 0.0033 18.2 0.2 1 23 753 775 753 775 0.98 17 17 0.0026 0.24 12.3 1.1 1 21 781 801 781 802 0.94
Sequence Information
- Coding Sequence
- ATGTTGTTTACCATTACAGCTCCTAGCGTCCCCTCCACAATGATGGTTCAAATAACAACTGATAAGAGTGGACCCAAATTAGTCTGTCCCGTGTGCGATAAAGCTCTCGTCTCACTTAACGGTTATGTGAAGCATATGAAGAAACACGAACCACCAGGTGGTTACTTATGCAACTACTGTGATGATCGCTTCTGCCTCGAAGATCACCTCAAAAAACATAAAGACGAAAAACATAAGATCCTTGCATGCCAAATCTGCCATCAGACATTTGATTCTGTTCAAGATTATCGCATTCACATCAATGATGTTCATCAAGGTGTCGATCGTCGAATGATCAAGTGTGAAAAGTGTGGCATGGAATTCAAGACGGCTCAGGCTGCCAAAAGGCACACAGAAACACAATGTGGTAAAATTAAGCCccatccatgcgatcaatgtgaaatggcattttatacgaaatacaatttggccgaacacaagaagatccatagtggggagaaaaaattctgctgcagctattgtgggaagagttttttgagcaatggaagattagttattcatgagaggagtcacaccggcgagaagccatacaagtgcgatGTCTGTGGAAAATGCTTTGCACATCGCGAGAGCATTGTCACTCATTCCTCAATACACACTGGAGTTAAATTGGTTGTTTGCAAGTGCTGTGGTTCAAGATTCTCTTGCCATTCGAATCTAATCAAACACAGACGAACTCGACCCGATACTTGTGGTCTAGCAATTTATAACGCCACCAAAGAGACGAAACGGAATGGAAGCTCAAGAATTCCTCCCGGTCTGATGTCTTCAGAGATAAAAATTGTTCGTGCAAGCAAAGTCATTAAACCCAATGAAGAACAAAAGAAGATCAAGGCTGCCAATTCCAGTGAAGAACAAAAGAAACCAAAAGTTACCAAGCCTAGAGCAAAACCTATAAAAATTAAATCCGACTCAGAAGATGATGATGATGATGATAATGAGGAAGAAGTTATAATAACAAGGCCAAGACGAAGTTTCCTCCCAAAGCAACCTATGCCTGTCGAAGAAATTGATACTAAACCACCAGAATCACCATCAAAAGACTTTGATTCCGACAACTATAGTGATGATCCACTCTTTGATAGTCCAACGCATTCAGTTTATTCCTCCGATGATGAAAAGCCCATAGTGAAGCGAGAGCCTTTGGAGAAAAATCTAATCGAAGTAGTTGAAGAGGCTCCAGTTAAAAAAGAAGAAGAACCCGAGGATTTTTTCAAAGAACAAGATCAAATTTTGGAAAAATTTCTGTCCGAAAGTGCAATTGACGTGAAATATGAACCTTTGGTAGAAATCAAAGAAGAAACAGAAGATATAAAGAAAGTTGGGCCATGTCAAGAAGTTCTTGAAGATCAAAGCGAAAAAAAGACTCCAACTAAAAGAACCAGGAGAAAGAAATCAGATATTGCTTCTGCCAATGCATTTGACAAAAAGGAACTCGACGACCTGGAAGAGCCACTTCCAAAAAAGAGACGTGGACGTGGGGCGTTGCGTAAGAGACTTCGCCTCTTCAAAAAAGATCGGGTGTATGAATGTAAATTTTGTGCAAAAGTCTATCATATCAAAAAACCATACGAGAAACACCTTCGGACACTACATAAAAAGACCGATGAAGAGCTGCGTGAACTGTTTAAGGATGAAGACAATGACATTCCAGATGAATATGTACACCGTTGTCCAATTTGTTCCAAGATCTATCTTATGGCTAAACGACTGAAGACTCATTTAACTTTTCATGGTCCCGATGGAAGTCTTATTCACAAATGTCCTGGCTATTGCAAATTGTATTTCCATACTAAAGAGGAAGCCATGGATCATGCTAAGGCCATGCATAAGGAATGTTTTTATTGTGAAATCTGCGATAAGTACTCCCAATCACCAGATTCCCTCAAAATTCATAAACGAACTCATTTTGAGCAACGCAGGCAAGCAAATCGCAATTTAATTTGTGACAAGTGTGCCAAGTCTTTTGCCAGTCGAACATCGCTTAATGACCATACAAGATCGAATTGCGGTAAAGACCCCCTCTATGGGTGCGATATTTGTGATAAAAAATTCAGCACAGCTGGCATCTTGAAGACACATTCTCTGTTGCATAAGGATGAGACTCCTTATGCATGTGATAAGTGTGGAAAGACTTTTAAAATTAAAGCACAATACAAGACACACATTAAGATGAAGCACACAGAGTATAAGCCTTTCAAGTGTGAGCTTTGCCCCAAGGCGTATCCGTATCGAGAAAGCCTTTTAACACACATGACTGTTCATACAGGACTAAAACGGTATGCATGCAATGGATGCAGTAAACGGTTCACATGTATTTCGAATCTGCAAGCTCATCGTAAAGTCTATGCTGATACTTGTGGATTACAGCCGTTAAATTCAAAACCAAGCACTTATTTGGGTGTGCAAAAGGGCATGCTCCTAATGGGAACAAAACCTTCTTATTAA
- Protein Sequence
- MLFTITAPSVPSTMMVQITTDKSGPKLVCPVCDKALVSLNGYVKHMKKHEPPGGYLCNYCDDRFCLEDHLKKHKDEKHKILACQICHQTFDSVQDYRIHINDVHQGVDRRMIKCEKCGMEFKTAQAAKRHTETQCGKIKPHPCDQCEMAFYTKYNLAEHKKIHSGEKKFCCSYCGKSFLSNGRLVIHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVVCKCCGSRFSCHSNLIKHRRTRPDTCGLAIYNATKETKRNGSSRIPPGLMSSEIKIVRASKVIKPNEEQKKIKAANSSEEQKKPKVTKPRAKPIKIKSDSEDDDDDDNEEEVIITRPRRSFLPKQPMPVEEIDTKPPESPSKDFDSDNYSDDPLFDSPTHSVYSSDDEKPIVKREPLEKNLIEVVEEAPVKKEEEPEDFFKEQDQILEKFLSESAIDVKYEPLVEIKEETEDIKKVGPCQEVLEDQSEKKTPTKRTRRKKSDIASANAFDKKELDDLEEPLPKKRRGRGALRKRLRLFKKDRVYECKFCAKVYHIKKPYEKHLRTLHKKTDEELRELFKDEDNDIPDEYVHRCPICSKIYLMAKRLKTHLTFHGPDGSLIHKCPGYCKLYFHTKEEAMDHAKAMHKECFYCEICDKYSQSPDSLKIHKRTHFEQRRQANRNLICDKCAKSFASRTSLNDHTRSNCGKDPLYGCDICDKKFSTAGILKTHSLLHKDETPYACDKCGKTFKIKAQYKTHIKMKHTEYKPFKCELCPKAYPYRESLLTHMTVHTGLKRYACNGCSKRFTCISNLQAHRKVYADTCGLQPLNSKPSTYLGVQKGMLLMGTKPSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01357262;
- 90% Identity
- -
- 80% Identity
- -