Basic Information

Insect: Melipona quadrifasciata
Gene Symbol: RREB1_1
Assembly: GCA_001276565.1
Location: KQ435922.1:3286567-3311989[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.042 3.6 7.9 0.2 1 23 39 61 39 61 0.95

2 16 1.6e-06 0.00014 21.8 3.5 1 23 75 97 75 97 0.98

3 16 7.6e-07 6.4e-05 22.8 1.2 1 23 103 126 103 126 0.98

4 16 0.058 4.9 7.5 0.2 2 23 230 253 229 253 0.93

5 16 0.11 9 6.7 0.7 2 20 259 277 259 279 0.93

6 16 1.1 91 3.5 0.6 1 19 295 313 295 315 0.89

7 16 0.11 9.7 6.5 0.1 1 23 427 449 427 449 0.96

8 16 1.6e-05 0.0014 18.7 0.3 1 23 458 480 458 480 0.98

9 16 0.0007 0.06 13.5 2.8 1 23 486 509 486 509 0.97

10 16 0.00037 0.032 14.4 2.8 1 23 777 800 777 800 0.96

11 16 0.00028 0.024 14.8 0.1 3 23 1046 1066 1044 1066 0.97

12 16 0.14 12 6.3 6.9 1 23 1072 1095 1072 1095 0.97

13 16 0.0023 0.2 11.9 2.2 1 23 1133 1157 1133 1157 0.97

14 16 0.27 23 5.4 4.8 1 23 1218 1241 1218 1241 0.96

15 16 0.0064 0.54 10.5 0.4 2 23 1292 1313 1291 1313 0.94

16 16 0.75 64 4.0 8.2 1 23 1319 1341 1319 1341 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.042	3.6	7.9	0.2	1	23	39	61	39	61	0.95
2	16	1.6e-06	0.00014	21.8	3.5	1	23	75	97	75	97	0.98
3	16	7.6e-07	6.4e-05	22.8	1.2	1	23	103	126	103	126	0.98
4	16	0.058	4.9	7.5	0.2	2	23	230	253	229	253	0.93
5	16	0.11	9	6.7	0.7	2	20	259	277	259	279	0.93
6	16	1.1	91	3.5	0.6	1	19	295	313	295	315	0.89
7	16	0.11	9.7	6.5	0.1	1	23	427	449	427	449	0.96
8	16	1.6e-05	0.0014	18.7	0.3	1	23	458	480	458	480	0.98
9	16	0.0007	0.06	13.5	2.8	1	23	486	509	486	509	0.97
10	16	0.00037	0.032	14.4	2.8	1	23	777	800	777	800	0.96
11	16	0.00028	0.024	14.8	0.1	3	23	1046	1066	1044	1066	0.97
12	16	0.14	12	6.3	6.9	1	23	1072	1095	1072	1095	0.97
13	16	0.0023	0.2	11.9	2.2	1	23	1133	1157	1133	1157	0.97
14	16	0.27	23	5.4	4.8	1	23	1218	1241	1218	1241	0.96
15	16	0.0064	0.54	10.5	0.4	2	23	1292	1313	1291	1313	0.94
16	16	0.75	64	4.0	8.2	1	23	1319	1341	1319	1341	0.98

Sequence Information

Coding Sequence: atggattACTCGACGAAAGttACTGTCAAAAGTGGCTCCGGGCAAAGATCTGAGAGTGAAACGCAAGCCGATGCTGCCTCATCCCCATCCAGTGTTGAACTACCGGAAAGCGCGCACTCGTGCCCGGCCTGTTCGGCCGTGTTGCCCACCTCCGGTGACTTGACGAACCACATACACGGCCACAACTCGTCGCGCAGCACGGACTGCAGCGGCGAGGACGAGTACTGCTGCAACATGTGCAACAGGGTTTTCAGCTCTTCCAGTTCCCTCAACAGGCACTTGTCGATGCACGCAGGTGCCCGGCCGTACAAGTGCAAGTACTGCGAAATGGCGTTCACCACGAACGGGAACATGAACAGGCACCTGAAAACGGCGCACAGGGGCGCGTCGCCGCACAGCTATACGGACTCGGAGGCAAGTACCAGCGGCAGTAACAGCAGCGACTCGGAGAAATCCAAGAGGCGACATCTCGAGGAGTACAACAACAACGAGATCACGAAGAGGAACTCGCCGGATTACGTCGAAGGGCACGAGGAGAgggaggaggacgaggaggagatGCCCTCGTCGTTGCCAGCGAAGAGGAAATGCTCGAGCGACAACGAGACGCAGAAGAGGCACAAGATCCTTCTGAACAACTCGAGGATTGAAATGAAGCCAAGACCGGATGACGGTCAGAACATCTGCACCTGTCCGGTGTGCGGCAGACAGGACTTTGGCAGTAGCGCGCTCTTGGAGGCGCATCTGGAACGAAATCACCCGGAGTTCCCCGCGAAATGCGACAGTTGCAACCTGTCGTTCAAAAACCACCGGGTGTTGAATCTCCATCGGGCCGTGTGCGAGCAGTCTCTTCACCGGCCGGCCTCCGGCGAAGTGGCCAAGTTCCAATGCTCCAAGTGTCTGCGAGCGTTCCCTTGCAGATCGGCGTTGGACGCCCACGAGACCGACTGCGGCACCGCCAACTCCCAGAGTCGAACGAACGACGGCCAGTCGAGGAGGGACGACTTCTTCGCCGGCCTGGACCTGCAGAACAAGGCCGCGCTGACGGAGgcgaaagaagggaaagaCCTCGCCGACATACAGAGCATCATATCCGTCACGTCTGGGCCGATACTGCAAAATTTCCCACGATCGGACGCGAGCACGCCCGAGAACGTGAAATTCAATCCAGGCGCGAGCTCTTCGGGCTCGTCCGGCACGTACTCCTCCGAGTACCACGAGGAAGAGGCACAGGACGCGTTCGCCGCGGAATTCCGACGGATGAAACTGAAGGGGGAGTTCCCCTGCAGGCTCTGTTCCGCGATATTCCCGAACCTGAGGGCGTTGAAGGGGCACAACAGAGCGCACATGGGAGTGGGGCCAGGCATGCCATACCCGTGCAACATGTGTCCCTACACCAGCACCGACAAGGCAACGCTGGTGAGGCATCTGAGATCCCACAACGGCGACAGACCGTACGAGTGCTCCCTCTGCAACTACGCGTTCACGACCAAGGCGAACTGCGAACGCCACGTGCGCAACCGCCACGGGAAACTGACCCGAGAGGACATCAAGAGCGTCCTCATCTACCACCCGAACGAGGACTCGACGAACGAGAACGTGGGACGAACCTCGCCGAGAGTCGCGAAGGACGAGGTGAGGAAGAGCTTGGTTTTCCCGAGCGAGCGAGGCGAGCTTCATCATCAAGCGCAGGTGCACTATCCTCCCCCGGTCAGGGGAGAGATCAGGATAATAGAAGAAGCGAAACTGAACAACGCTGCGATGggggcggcggcggcggcggcgcaCCACGTTCTGAACCTGTCCGAGACGTCCGGCGAGGACGGCCCGTTGGACCTGTCCATGGACGTGCTCGATCTCAGCAAGAAGTCGAGGAACAAGGACGAGAACGACTTCGCCGCGTCCCACGAGCAATACGGCAAAAGCCAGAAAGATCTAAACTTCGGCACGTACCCAGCCGGCGTTGGCGCTGGGATTCTGCCGCCGTACATGTTCAGTCCTCACATATTCGGCCAGGACTTCGCCCTGAAGGACAGGTTGGAGAAAGATTTGGTCAGAGGTCTGCAACTGACCAGCGGAGGCACTCTGGTGGAGCCGTCGACCAGTAGCGCTGGGTTCAGCGCGTACTCACAGAACAGAGACATGAATCCTCAGTCAGCCGACCAGAGCGAATACGCGAAGCTGATATCTTCCAAGATGGCGAGCAAAGGAGTAACGAGCCGCGACAAGCCGGACAACATGTCGTCGTCCAACTCGGTGAAAATGGTGATCAAGAACGGAGTGCTGATGCCTAAGCAGAAGCAACGAAGATACAGGACCGAGAGGCCTTTCTCTTGCGAGCATTGCTCGGCGAGGTTCACGCTGAGGAGCAACATGGAGAGACACATCAAGCAGCAGCATCCTCAACACTGGAGCCAAAGACCCAGGGGTGGCCACTCCACGAGAGGAAGACCTCCTACCAATCACCCTACGTTGCTGCAGAACCTTGGACAGCCGGCTCCACAGGTTCCCCAATCGTACGCCAACATTCTGCCAAAGAGCGAAGAATCGACAGAATTCCCGAGGCATTCCATCTCCGACCAGGTGAAATACGCGATCCTCACGCAGAAGCTGAGAGCGAACAAGATCGAGGACAACGACTCCGAGGAAGAGTTGGTGATAGACGAAGGCCCGCAAGAGAAGGAGTGTCAAGAGTCTCAGGATCAGAAGGAGAAAAGTCTGTTGAGGGGGCAGTTGGAAGGTGGAGAGTCCGCGAAGGAGACTGCGGCGAAGGAGTCGTCGAGAACCGACTCGAACGAGGCCGAGCCTGAGAAGAAAGCGGACGCGAGAGAAGAGACGAAGGGGCAGACCTCTGCTGAGACAGATCGCGATAGACCGGCCGACAGGGATCCTAGCAAAGCGTGCAAAACGGGACCGGTCGAGGTGAAGAGCGAGAAAACGGAAGACGAAAACACCGACTTGGCTAGCGTCTCGGAGTTATTGGACAACGCGTGCCAGCAGTATCCGGAGTTTCAGTCGCAGTATCTGAGCGACGAGGAAGGTCTGGTGGCGTCGAACAGCGAGTGCCACAATTCGGGCAGCGACGAGAAGTCCGACTCGaaatcagcGTACTCGATGGCGCCGAACAAAGTGATCTGTCCGTACTGTCAACGCCCGTTTCCCTGGACGTCGTCTCTCAGGAGACACATTCTCACCCACACGGGACAAAAGCCCTACCAGTGCACTCATTGCTCGCTTCTGTTCACCACGAAGTCGAACTGCGACCGTCACCTGCTGAGGAAGCACAAGACAAACCCTAACAAAGTGCACAGAGCGAGAAACTCCTCTTCGCCGGACTCCCAGCCGGTGATCAACAGCAACAACTCGTTCTCCACGAGGAACGTGCCGGAAAGGCCGTACAAGTGCAATCAGTGTCCCAGCTCGACGTTCTCAACCCTGGGAAACCTGAAGAAACACCGTTCGACGAAGCACGCTCGAAAGTTGAAGTCGCGGTCGGACACACCCCAATCCTCGAGCGTGTCCGAGGGTCCGCTGGAACCTTCATCCGTGGCGGCGCTTCCCAAGTCCAACTCCAACACCTCCTCGACCAACGACACAGTCAGGTCGAGAAGATCCTCGCCACGAACGTCGCCAGGACCTAGCGACGTGCCGTTCAAATGCCACCTGTGCGACTGCGGCTTCGCGGACCGCCAAGATTGTTTGGAACACATCAAGGTGAATCACAAAAGATCCTACGAGATGCTGGTGGCGAAAGGAGCGTTGGACATGGACATCGACGCGATGGAAGAGCAGCAACAGCCACCGCCGCAACACCAGACCAGCGACGgggaagagaaacgaggacGTTTTCCGGACTACAGCAACAGGAAGGTGGTCTGCGCTTTCTGCATGAGGCGATTCTGGTCCGCGGAGGATCTCCGACGTCACATGAGGACGCACACCGGCGAACGGCCGTTCTCCTGCGACATTTGCTGCAGGAGATTCACACTGAAGCACAGCATGCTGCGGCACAGGAAAAAGCACGAGTCCATCGACTCGACGATGTACGTCGGCACGAGCGGCGACGAGGAGAACTCGCCGTCGCAGCCGTCTACCATCGCACCGCACGGTCAACAACAACAAATGCTGCTAACGACGAACAACGGGAATCACATTCAGGATAGGATCGCGACACATTTGCCGACCGCCGCTCCGATAGCAGCCAGCGACGCGGCGGCACCTAGCGGATTAATCAGAGATATTAACAAGGAAAAAACTTTCGAGCAGAGATTGCTCGATAACGTCTGTATAcgAAATTTATTCTGTGCTACGAACTGTCGATGA
Protein Sequence: MDYSTKVTVKSGSGQRSESETQADAASSPSSVELPESAHSCPACSAVLPTSGDLTNHIHGHNSSRSTDCSGEDEYCCNMCNRVFSSSSSLNRHLSMHAGARPYKCKYCEMAFTTNGNMNRHLKTAHRGASPHSYTDSEASTSGSNSSDSEKSKRRHLEEYNNNEITKRNSPDYVEGHEEREEDEEEMPSSLPAKRKCSSDNETQKRHKILLNNSRIEMKPRPDDGQNICTCPVCGRQDFGSSALLEAHLERNHPEFPAKCDSCNLSFKNHRVLNLHRAVCEQSLHRPASGEVAKFQCSKCLRAFPCRSALDAHETDCGTANSQSRTNDGQSRRDDFFAGLDLQNKAALTEAKEGKDLADIQSIISVTSGPILQNFPRSDASTPENVKFNPGASSSGSSGTYSSEYHEEEAQDAFAAEFRRMKLKGEFPCRLCSAIFPNLRALKGHNRAHMGVGPGMPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENVGRTSPRVAKDEVRKSLVFPSERGELHHQAQVHYPPPVRGEIRIIEEAKLNNAAMGAAAAAAHHVLNLSETSGEDGPLDLSMDVLDLSKKSRNKDENDFAASHEQYGKSQKDLNFGTYPAGVGAGILPPYMFSPHIFGQDFALKDRLEKDLVRGLQLTSGGTLVEPSTSSAGFSAYSQNRDMNPQSADQSEYAKLISSKMASKGVTSRDKPDNMSSSNSVKMVIKNGVLMPKQKQRRYRTERPFSCEHCSARFTLRSNMERHIKQQHPQHWSQRPRGGHSTRGRPPTNHPTLLQNLGQPAPQVPQSYANILPKSEESTEFPRHSISDQVKYAILTQKLRANKIEDNDSEEELVIDEGPQEKECQESQDQKEKSLLRGQLEGGESAKETAAKESSRTDSNEAEPEKKADAREETKGQTSAETDRDRPADRDPSKACKTGPVEVKSEKTEDENTDLASVSELLDNACQQYPEFQSQYLSDEEGLVASNSECHNSGSDEKSDSKSAYSMAPNKVICPYCQRPFPWTSSLRRHILTHTGQKPYQCTHCSLLFTTKSNCDRHLLRKHKTNPNKVHRARNSSSPDSQPVINSNNSFSTRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHARKLKSRSDTPQSSSVSEGPLEPSSVAALPKSNSNTSSTNDTVRSRRSSPRTSPGPSDVPFKCHLCDCGFADRQDCLEHIKVNHKRSYEMLVAKGALDMDIDAMEEQQQPPPQHQTSDGEEKRGRFPDYSNRKVVCAFCMRRFWSAEDLRRHMRTHTGERPFSCDICCRRFTLKHSMLRHRKKHESIDSTMYVGTSGDEENSPSQPSTIAPHGQQQQMLLTTNNGNHIQDRIATHLPTAAPIAASDAAAPSGLIRDINKEKTFEQRLLDNVCIRNLFCATNCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734122;
90% Identity: -
80% Identity: -