Basic Information

Insect: Melipona quadrifasciata
Gene Symbol: LST
Assembly: GCA_001276565.1
Location: KQ435922.1:4545433-4560023[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.00032 0.027 14.6 0.7 2 19 451 468 450 472 0.89

2 17 3e-05 0.0026 17.8 4.2 1 23 478 500 478 500 0.98

3 17 0.00029 0.024 14.7 0.1 3 23 508 529 506 529 0.94

4 17 0.36 31 5.0 1.8 1 23 536 559 536 559 0.98

5 17 4.4e-05 0.0037 17.3 0.7 1 23 563 585 563 585 0.97

6 17 0.002 0.17 12.1 0.5 1 23 591 613 591 613 0.98

7 17 0.00015 0.013 15.6 2.3 1 23 619 641 619 641 0.96

8 17 5.1e-06 0.00044 20.2 2.7 1 23 646 668 646 668 0.96

9 17 0.6 51 4.3 1.6 1 23 1213 1236 1213 1236 0.98

10 17 0.0016 0.14 12.4 0.3 1 23 1242 1264 1242 1264 0.97

11 17 0.071 6.1 7.2 0.5 1 23 1270 1292 1270 1292 0.97

12 17 8.7e-06 0.00074 19.5 0.3 2 23 1299 1320 1298 1320 0.97

13 17 0.58 49 4.3 0.3 2 23 1327 1349 1326 1349 0.94

14 17 1.1e-05 0.00091 19.2 0.5 1 23 1353 1375 1353 1375 0.98

15 17 0.022 1.9 8.8 0.7 1 23 1380 1402 1380 1402 0.98

16 17 2e-07 1.7e-05 24.7 0.9 1 23 1408 1430 1408 1430 0.98

17 17 9.2e-05 0.0078 16.3 1.7 1 21 1435 1455 1435 1456 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.00032	0.027	14.6	0.7	2	19	451	468	450	472	0.89
2	17	3e-05	0.0026	17.8	4.2	1	23	478	500	478	500	0.98
3	17	0.00029	0.024	14.7	0.1	3	23	508	529	506	529	0.94
4	17	0.36	31	5.0	1.8	1	23	536	559	536	559	0.98
5	17	4.4e-05	0.0037	17.3	0.7	1	23	563	585	563	585	0.97
6	17	0.002	0.17	12.1	0.5	1	23	591	613	591	613	0.98
7	17	0.00015	0.013	15.6	2.3	1	23	619	641	619	641	0.96
8	17	5.1e-06	0.00044	20.2	2.7	1	23	646	668	646	668	0.96
9	17	0.6	51	4.3	1.6	1	23	1213	1236	1213	1236	0.98
10	17	0.0016	0.14	12.4	0.3	1	23	1242	1264	1242	1264	0.97
11	17	0.071	6.1	7.2	0.5	1	23	1270	1292	1270	1292	0.97
12	17	8.7e-06	0.00074	19.5	0.3	2	23	1299	1320	1298	1320	0.97
13	17	0.58	49	4.3	0.3	2	23	1327	1349	1326	1349	0.94
14	17	1.1e-05	0.00091	19.2	0.5	1	23	1353	1375	1353	1375	0.98
15	17	0.022	1.9	8.8	0.7	1	23	1380	1402	1380	1402	0.98
16	17	2e-07	1.7e-05	24.7	0.9	1	23	1408	1430	1408	1430	0.98
17	17	9.2e-05	0.0078	16.3	1.7	1	21	1435	1455	1435	1456	0.94

Sequence Information

Coding Sequence: ATGAACGCGGAAAGAAGATGGCCGATTGGTCAGAACTCGTCCAATGGTGCGGGGGCGGGGAAGGGAAGTGAACGTATGCTGGTCTGGCCCAAACGCGGCTGCATCCCCGTGCCAGACCGAGGAGTAATAGATGAAAGGGATCCTCTGCCCAAGGCGATCTGTGTTCAATGTCTGGGCAAGCTCGAATTCGTTTGCGACTTCCAAGAGGAGTGTCTTCGCACCCAACAAGTGTTACGCGATCGATACAATCTACCACCCTTAACAGAGATTGCTGAAGTAAAGACTGAAGATACACCAAGTGCACCAAGTACATCTACAAACGATAGTAACAATGAAACCAACAATAATCTTAATTCTTCAACTGATGAAAGCATTAAAGAAGCAGAGCAACGTGTTCTAAGAACAGCTACAAAAGctcaaagaaatttaagaagTCAACAACAAGTAAGAGGCAATGAAGAAGGTGCGAACGATCAAAATAGTGTTCAAAGTACAACCGAAGACAATATTGAGAATGtacaaattgttcaaaattctGAAACAACCCCTACGCGATGGCTTAGAAGTAGACAGAGTACAGaaacaattgtaataaatgatGCAACGATTGATATACCAATCGCAAACAGACTTAGAAGTCACGACAATACTGCCACAGAAATAACTGTTAGTCCGTGTAATAATTCCAATGAAAACAGTGATAAACCGATTGGAAAACAGCAAGATCCACATACTATTCAAATTCCGACCTCAGCATTGAATAAACTTCTCAGTATCGTGTCGAACTCCCCAAACATCGAAGTTTCTGTCAAAGAATCCAGAAATCAAGCCAGCGACATCGAAGATATCAGTTTTACTGTAGAATTATGTAAGAAGGAAAGCGACGATGTAGCTACTGTCCGAGCGCGAGTATTTCCAGATCAAGGTTCTTGCTTAGTGGATAAGGCAATCGTTGGtcttttacaaaatcaaaGTTGTGTAGAagtaaatagtataataaataccaTTATTAACAGTAGCTTGAAGAACGGCAGTTCGACCAAATTGAGGGACTCTGCTGAATTCGAGCAAAAATGGCAAGCCTCTCAAAATCCAGAAGAACTCTTTAGGATTGACGGAGAAGAGATTCGTGTCGACGATAACGTCGAGCATATCGTCACGGATAATCAAAATGGATACTCTTGTAAATTATGTTGTAAATTCTATGAACGCAAGGACAAATGTATGGTTCACGTGAAGACCCATCTTGGTATTAAACAGTATACCTGTATCCTGTGCAACGCGAAATTCGTATGCAAATCTGATGTAATGAAGCATATTCGATGTTCACATACTAACCCTAGGCCGATACAATGCCCAAAATGTCCAAAGAGATTTAAgtcaaagttttatttaatggAGCACGACAATGTGCACAAGGGTGTAAGACCTTATTCTTGTACGGACTGTGGTCAGAGTTATCACCACAAAGTATCGCTACAAATCCACATGAAGTCACACTTACCTCCGCAGAATTTAGCTTGCGAATATTGCGGCAAGGTGTTCCCGTACCGTACGAGATTATTAAGTCATATAGCTAgtgtacatttaaaaaatcgtcgTAACTTCAGGTGTCGATTTTGTTACAATCTATATTCGAGTCTTTCAGTTTTGAATGAGCACATTAAAACGCGACACGCGACTACATATACCTGTGAAATTTGTAGTAAAACGTTCAAAGTTGCGTCCAAATATAAGGCTCACGTGTTGCAACATTCGAATCCTAAACCATTTGTATGTAATGTTTGTAACAATAGATATGCATCAAAAGCATTCCTGAACGAACATCTATTGAAGCACGAAGGGCTGAGGAAACACATTTGTCAAAAGTGTGGTGCAAGGTTTGCTCAAGCTAGTCATCTTGCTGCACACCGGCACGTGCATGGTGAAAAAAAGCATGCTTGTCCGGAGTGCGGACGAAAATTTAACAGGCGTGATAACATGAAAGTACACAGAAAAAgacattttgaagaaaaaaagactaGTAACAGCAAACAGAAAAACGCTTTTAGTGGCGACgtaaaagaaaatgatggACTACCTCAGATTGTTTGTATGCGATGTTTGGGTACACTGGAGTTCTTATGTGATTTTTATGAGCGCTGTCATCTTGTTCAAAAAGGATTATCGAAAGCTAGTCAAAATACAAGAGATGAAAAGTTCCAAGAAGACAGTGATGTAGAATCAGATAAGGAGAACGCTGTCCCATCAAAGAATGGGACTAAATGGAAAGTCAAGGTTTCATCATCTGACAATTTAAAGAgtacaaaaaattgtttttctgaAGATAATACATACAAGACtgaaagggaaaaggaaagcGTCAATTTCGTAGATAATAATTCCAGtactaataattattcagTTACGCAAACTACAGTACAATTAAGCAATGTAACTTCATATGAAAAATTCCCAAGAAACGATCAGCGTAACGTTAGTAGTTTAAAACataggaatttaaaaaataatattgtaaaaaaaccTGCAATTCGTACAAAGTTAACAAATGGGTTGTCGCAAAAAGATGAGGAGGATATTGATATCAAATCAGGCCAGCCAGCACGACGTAAAAGAGGACGGAAAAGTAAATTCGAGAAGATGAGAGGAACAATCCGAAATGATTGTTTTTTTAAGGTCCGTTGCGAAACTGATTTTTCTCTGACAAACAGGAGTGATAATATTGATAACaatagaagaaacaaaaatttgaacaatgaACGCGAAAAAAGTAGCCTGCCTGTTATTTGTGATAATGATAATTCCAATAGGGTGATCAATAATGTTATAACTTTACCATCTCAAATCGAAGTGGAACAGGTGATTGATACGCCCTTGATCTCTATAGATTTTACCAAAAGCAATGAAGCTGATATAGTGATTGATAAATCACcagaaataaaatctaatgATGAAAGCATGGAGAAAATTGGCAATTGTTTGAATAATACAGAAGACTGCTCTGTAAAAAGTAAAGCAATATTGGttccgaaaaaagaaaaaggagaagtgAAAAGTGCTTCTTTTCTTAAACAgagtgaaaatttaacaagGAATCAAAGTTTGCTGGCAGAAGAATCTAAAAAAACTGAAGATAGTGAGACTAATTTAATAACAGTACCTgacaataattttgatatagaaattatttctgttaataataatcaacagTCTGAAATATTCACAGAACAAAATCGTATGGCTGTTACAAAATCTTCTTCTAATAAAGTATCAAATCCAAAGACGATACAGCAAGATTGTACAGAAGTTTGTATTGGGATAGATATAATAGATGaaagtatcaaaaataaagaaagcaATGTTTTCAATGAACATTCATTATCTCGACACAATCAAGATAgtttcaaaagtaaaaatagaCCGTTtggtaaaatttccaaattaataaGTGATGAACAGAAACAAATCATTGAAACTTATTACGTGGTGAATATGTCAGCGATAAACTCGGAAGAAGTACAAAGAAACATAACGGTAgttgataaaaagaatatacgCTGCAATATTTGTGGTAGTCTCTATCCTAGAATGGATAAATGTCAaGTACATATTTGGGGACATTTACAAATGAAACCGTATCAATGCAAAGCTTGTGATTTTGCTACAGTTACTGTTAGCAATGTTCGTTGCCATATCAGAAAGAgtcacttaaaaattaaaccaTTCGCGTGCCATCTTTGTGAAAAACGATATGTAACTGCTGTACTACTAGGAGAACATATTAATAGTCATACAGGTGCGCGTCCATACAAGTGCGAACTCTGTGACTTTGCAGGTTCCAGTAGGCAAACGCTAAGTTACCATAGTGCTACTCATAAACCACTAAAGGATGTGAGCTGCAAAATTTGTGGGAAGGAGTTTTATTCAAAAACTAGATTACGCGCGCACATGATTGTACATAACAAGGATAAAGCTGTTATGTGTAAACTATGTTCTGTTTATTTATCTAACGCAGAAGCATTAGAAATgcatcataaaaatattcacatgCAAGATTATGTGTGTAATATATGTGGCAAACGTGTCAAATCAAGAAAAGCTTTATATAATCATCAAAATGTTCATGCTGtagcaaaatataaatgtactcTATGTCCAAATGTGTATAAGAGTAGCCAAATACTAAAAGAACATCTTTTGAAGCATGAAGGTATCAGAAAGTACAAAtgtaatgtttgtaaaaaatcGTTTGGTCAACAATCTCATTTAGCTGCTCATATGGCAGTACATAGTAAAATTAGattcCATTGCCCCGGATGTAAAAAACCTTTCAATCGTCAGGATAATATGAAAATGCATACTAAACGATGCAAACCATTTTTGGAAAATCCAGATTTGAAAAGACTTTTAAATAGAAGAGAAAGGACTATATCGTTCGATGACGTAACAGAATTAACTGCAAAACTAAAGACTGGAAATATCACAAATTCCGTGTCTTCAGTTTCTCTACAAAATCAGAATGGTGATATATCAGTAAAGACTGAAGAAGAGACTGTGTTAAATCTTTGCAAATTAGAacagaatatttctttgattgACTCGACAGATAAAACATGTAATTCtgataagaaatataatgGAAAAGAAGTAACGAAATCTGACAATATTAATGTagttaaaattgcaaatactAATGACAGATTAATTccagaaaacgaaaatttAGAAAAATACGAGAATATGGCCCTTGAACCACCGgaatatgaatatttgaatgaGGAAGATAACAAAAAactgatgaaattatttacggGTCAAAAATCAGGTTTCGTTCTCGTGGGTCCTAAAAAATGGTTCTTCCCGCTTCAATATACGACAGATggtaaagaattttataattttaaagtaagGCCGGATGACACATGGGTGATGTCTTATCCTCGATCAGGAACGACTTGGACTCAAGAATTAGTCTGGTTGCTATCAAATGACTTAGATTTTAACAGAGCAAGGACAGAATCCTTATCAAAAAGATTCCCATTTCTGGAATTTAGTATGTTCAATCATCCAGAAGTAATAGATGAAGTAGCAAAAATGAATGAGAATGATAAAGTTAAGGcagaaatctataaaataattaagccAGGATACGAAGTTCTGGCGAAAATGCCTTCCAAGAGGTTTATAAAAtcacattttccattttctttgttaCCTAATATTTTGGACAGTGGTTGCAAGATAGTGTATGTTGCAAGAAATccaaaaaatgttgcaatttcttGGTATCACCTCAATGTGTCAATTAAAACACAGGGATTCGTAGGTgattttccaacattttggGATTGCTTTCAAAATGATCTCAcatACTGGAGTCCATATTGGGAACATTTGAAAGAAGCATGGGCAAACAGAAATAATCCGAACGTTTTATTCATGTTTTATGAAGAAATGTATTATgATTTTCCGAAAGCAATTAAAAAGGTTGCtaaatttcttggaaaaacATATACTGAAGaacaaatgaaagaattagcagagtatttaaatataaaaaattttcgtgaTAATCCAATGGTAAATTTATCAGAATTAAAAGATTGTGGTATAATAAAAGCaggaatatttattagaaaggGTGGAATTGGTGGATGGGAAGATATGTTCACAGAACAGATTAATGCCAAAGCCAATAAATggatcgaagaaaatttaaaggatACAGATCTCACTTTTccgtattttaatattaatggtaACTATAAATGA
Protein Sequence: MNAERRWPIGQNSSNGAGAGKGSERMLVWPKRGCIPVPDRGVIDERDPLPKAICVQCLGKLEFVCDFQEECLRTQQVLRDRYNLPPLTEIAEVKTEDTPSAPSTSTNDSNNETNNNLNSSTDESIKEAEQRVLRTATKAQRNLRSQQQVRGNEEGANDQNSVQSTTEDNIENVQIVQNSETTPTRWLRSRQSTETIVINDATIDIPIANRLRSHDNTATEITVSPCNNSNENSDKPIGKQQDPHTIQIPTSALNKLLSIVSNSPNIEVSVKESRNQASDIEDISFTVELCKKESDDVATVRARVFPDQGSCLVDKAIVGLLQNQSCVEVNSIINTIINSSLKNGSSTKLRDSAEFEQKWQASQNPEELFRIDGEEIRVDDNVEHIVTDNQNGYSCKLCCKFYERKDKCMVHVKTHLGIKQYTCILCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLMEHDNVHKGVRPYSCTDCGQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPYRTRLLSHIASVHLKNRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCEICSKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQKCGARFAQASHLAAHRHVHGEKKHACPECGRKFNRRDNMKVHRKRHFEEKKTSNSKQKNAFSGDVKENDGLPQIVCMRCLGTLEFLCDFYERCHLVQKGLSKASQNTRDEKFQEDSDVESDKENAVPSKNGTKWKVKVSSSDNLKSTKNCFSEDNTYKTEREKESVNFVDNNSSTNNYSVTQTTVQLSNVTSYEKFPRNDQRNVSSLKHRNLKNNIVKKPAIRTKLTNGLSQKDEEDIDIKSGQPARRKRGRKSKFEKMRGTIRNDCFFKVRCETDFSLTNRSDNIDNNRRNKNLNNEREKSSLPVICDNDNSNRVINNVITLPSQIEVEQVIDTPLISIDFTKSNEADIVIDKSPEIKSNDESMEKIGNCLNNTEDCSVKSKAILVPKKEKGEVKSASFLKQSENLTRNQSLLAEESKKTEDSETNLITVPDNNFDIEIISVNNNQQSEIFTEQNRMAVTKSSSNKVSNPKTIQQDCTEVCIGIDIIDESIKNKESNVFNEHSLSRHNQDSFKSKNRPFGKISKLISDEQKQIIETYYVVNMSAINSEEVQRNITVVDKKNIRCNICGSLYPRMDKCQVHIWGHLQMKPYQCKACDFATVTVSNVRCHIRKSHLKIKPFACHLCEKRYVTAVLLGEHINSHTGARPYKCELCDFAGSSRQTLSYHSATHKPLKDVSCKICGKEFYSKTRLRAHMIVHNKDKAVMCKLCSVYLSNAEALEMHHKNIHMQDYVCNICGKRVKSRKALYNHQNVHAVAKYKCTLCPNVYKSSQILKEHLLKHEGIRKYKCNVCKKSFGQQSHLAAHMAVHSKIRFHCPGCKKPFNRQDNMKMHTKRCKPFLENPDLKRLLNRRERTISFDDVTELTAKLKTGNITNSVSSVSLQNQNGDISVKTEEETVLNLCKLEQNISLIDSTDKTCNSDKKYNGKEVTKSDNINVVKIANTNDRLIPENENLEKYENMALEPPEYEYLNEEDNKKLMKLFTGQKSGFVLVGPKKWFFPLQYTTDGKEFYNFKVRPDDTWVMSYPRSGTTWTQELVWLLSNDLDFNRARTESLSKRFPFLEFSMFNHPEVIDEVAKMNENDKVKAEIYKIIKPGYEVLAKMPSKRFIKSHFPFSLLPNILDSGCKIVYVARNPKNVAISWYHLNVSIKTQGFVGDFPTFWDCFQNDLTYWSPYWEHLKEAWANRNNPNVLFMFYEEMYYDFPKAIKKVAKFLGKTYTEEQMKELAEYLNIKNFRDNPMVNLSELKDCGIIKAGIFIRKGGIGGWEDMFTEQINAKANKWIEENLKDTDLTFPYFNINGNYK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00982443;
90% Identity: iTF_00982443; iTF_00983124;
80% Identity: -