Basic Information

Insect: Melipona beecheii
Gene Symbol: -
Assembly: GCA_032399605.1
Location: JAUCMO010000463.1:9346571-9349568[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00011 0.0089 16.6 3.0 2 23 19 40 18 40 0.94

2 18 0.00015 0.012 16.1 2.9 1 23 44 66 44 66 0.97

3 18 3.5e-05 0.0028 18.1 0.5 3 23 74 94 73 94 0.97

4 18 1.5e-05 0.0012 19.3 3.8 2 23 101 122 100 122 0.96

5 18 1.2 97 3.9 4.6 1 19 131 153 131 155 0.73

6 18 0.054 4.4 8.1 0.1 3 23 161 180 160 180 0.96

7 18 4.4e-07 3.6e-05 24.1 1.4 3 23 188 208 187 208 0.98

8 18 8.5e-08 7e-06 26.3 2.8 1 23 214 236 214 236 0.99

9 18 0.017 1.4 9.7 2.3 1 23 327 349 327 349 0.97

10 18 1.6e-05 0.0013 19.1 0.2 2 23 360 382 359 382 0.95

11 18 0.00012 0.0099 16.4 4.9 1 23 388 410 388 410 0.98

12 18 0.03 2.5 8.9 0.4 1 23 414 436 414 436 0.97

13 18 3.8e-06 0.00031 21.2 1.5 3 23 444 464 442 464 0.97

14 18 1.1e-05 0.00089 19.7 0.2 1 23 470 492 470 492 0.98

15 18 0.067 5.5 7.8 0.9 1 23 498 520 498 520 0.97

16 18 7.4e-06 0.00061 20.2 0.1 2 23 527 548 526 548 0.97

17 18 5.8e-07 4.7e-05 23.7 0.6 1 23 554 576 554 576 0.98

18 18 1e-07 8.4e-06 26.1 1.9 1 23 582 604 582 604 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00011	0.0089	16.6	3.0	2	23	19	40	18	40	0.94
2	18	0.00015	0.012	16.1	2.9	1	23	44	66	44	66	0.97
3	18	3.5e-05	0.0028	18.1	0.5	3	23	74	94	73	94	0.97
4	18	1.5e-05	0.0012	19.3	3.8	2	23	101	122	100	122	0.96
5	18	1.2	97	3.9	4.6	1	19	131	153	131	155	0.73
6	18	0.054	4.4	8.1	0.1	3	23	161	180	160	180	0.96
7	18	4.4e-07	3.6e-05	24.1	1.4	3	23	188	208	187	208	0.98
8	18	8.5e-08	7e-06	26.3	2.8	1	23	214	236	214	236	0.99
9	18	0.017	1.4	9.7	2.3	1	23	327	349	327	349	0.97
10	18	1.6e-05	0.0013	19.1	0.2	2	23	360	382	359	382	0.95
11	18	0.00012	0.0099	16.4	4.9	1	23	388	410	388	410	0.98
12	18	0.03	2.5	8.9	0.4	1	23	414	436	414	436	0.97
13	18	3.8e-06	0.00031	21.2	1.5	3	23	444	464	442	464	0.97
14	18	1.1e-05	0.00089	19.7	0.2	1	23	470	492	470	492	0.98
15	18	0.067	5.5	7.8	0.9	1	23	498	520	498	520	0.97
16	18	7.4e-06	0.00061	20.2	0.1	2	23	527	548	526	548	0.97
17	18	5.8e-07	4.7e-05	23.7	0.6	1	23	554	576	554	576	0.98
18	18	1e-07	8.4e-06	26.1	1.9	1	23	582	604	582	604	0.99

Sequence Information

Coding Sequence: atgaaaacaaaaaaacagaaaaaccaACAGGCTGTTGTTTCTGCCGACCCGATAGAATGTAACGTGTGTCACAAAGttttcaagaagaagaagtatcTGAATGTTCACAAAACGTTGCACGGGGCGCCGCACATTTGTCACATGTGTGGCATCAAACTGACCTCCGAATATTACCTGAAGATTCACATTAGGAGACACAACAAGGAGTTCACTGAATTCTGCGAGGTATGTAACAAAGGATTTTACTTGAAGGCGAATCTGAAAACGCACATGAGCGTGCACAGTGACGCTAAACCGTGCATCTGTGACATTTGTCATAAATCGTTCGGCAACAGAGTCTATCTGAAAAGTCACATGAAGATTCATAGGAAACCGGAGAACAGGAGAAAGTACAGATGCCATATCTGCGAGTTCGAGACTTTCTACAGTTACTGTTACAAGGAGCATTTGTGGACGCACACGGGAGAAAGTCAGGTGGCCTGCGAGGTCTGCGGCAAATTAATTAGGAAAGAGTACATGAAGATCCACATTAGGATACACACTGGCGAGAAGCCGGAGATCTGCGAATTTTGCGGGAAAGCATTTAGCTCAAAAAAGTACCTGATCAAGCATCGGAGAACTCACACAGGGGAAAAGCCTTATAAATGTGAAATCTGCGACAAGTGTTTCACCCAACGTGGCACCCTGAGCGCCCATCTGCGTCGACACGAGAATCCTAAGTGTCAGGAGATCGACGCCGAGGAACCAAAAATAGAGCAAATGGAAACGCTCGAGGATATGGAACTGGTGAAGTATGAGAGTGATATGTGCACAGTCGAGGAGTTCGAACAGATTAGTCACCAAGAAATAATAACTGACACGTTGGAAGAAAGTCACGACAACATGGACATAAAGGTGTCCCTCCAGGACGAAGAACTGTCAGTGAACGCTAATAAAGTTTTCACTAAGAAATACGAGACCAGAAAATGCTCGATCGTGTACGAGTGCGACATTTGTAACAAGAGAATGCGCAAGAAGCTTCAATTCCTGAAGCACAGGCAGGATCACGAGAGGAATGACGAGGAAGCTGGAATGGATCGTTGCGAGGAATGTGACAGAAGTTTCGCGGACGAGGAGAAGCTGAGGAAGCACGTGATCAAGGTGCATCAGAAGGAGAAACCGTTCCAATGCGTTCTCTGCAACAAATGCTTCAAAACGGAGGAATTCTTGAAGACACACCTGAAGCAGCACAACAAACGTTTCACGTGCGATATTTGCGGGATCTCGAAGGTATCCGGCTACGATCTTCGTTTgcataaaaagaaacacaacGAGGAGTACGTGACGCATTGCGAGATCTGCGGCAAAGGCTTCTACACGAACCAAACTCTGGAGAGACACTTGCTCACTCACACTGGCGAGAAGCCGTTCGTCTGCAAGGTGTGCAACACCCCATACGCGAGCGCCGCTTATCTGAACACGCACATGAAATCTCACggcgaacgagagaaacacaaatgcaatatttgcaatttcgaGAGCTACTGGAAAGCGGCTCTGAAGGTACACCTTAAAATTCACACGGGTGAGAATTTGATCACCTGCGAGATCTGCGGGAAATTAGTGTCGAGTAAGGCTTACCTGCAAATCCACATGCGTATACACTCTGGCGAGAAACCGCATGTCTGTGAAGTGTGTGGCAAAGCTTTCAGCGTTCGGAAATATCTGATTGTACACTTGAGAACGCATACAGGCGAAAGACCGTACGAGTGTAAGGTGTGCCAGAAAAGATTTACGCAGCAGGGTTCGTTGAATTCGCACATGAAGTCGCATAATGAACGAAAGTGA
Protein Sequence: MKTKKQKNQQAVVSADPIECNVCHKVFKKKKYLNVHKTLHGAPHICHMCGIKLTSEYYLKIHIRRHNKEFTEFCEVCNKGFYLKANLKTHMSVHSDAKPCICDICHKSFGNRVYLKSHMKIHRKPENRRKYRCHICEFETFYSYCYKEHLWTHTGESQVACEVCGKLIRKEYMKIHIRIHTGEKPEICEFCGKAFSSKKYLIKHRRTHTGEKPYKCEICDKCFTQRGTLSAHLRRHENPKCQEIDAEEPKIEQMETLEDMELVKYESDMCTVEEFEQISHQEIITDTLEESHDNMDIKVSLQDEELSVNANKVFTKKYETRKCSIVYECDICNKRMRKKLQFLKHRQDHERNDEEAGMDRCEECDRSFADEEKLRKHVIKVHQKEKPFQCVLCNKCFKTEEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVTHCEICGKGFYTNQTLERHLLTHTGEKPFVCKVCNTPYASAAYLNTHMKSHGEREKHKCNICNFESYWKAALKVHLKIHTGENLITCEICGKLVSSKAYLQIHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECKVCQKRFTQQGSLNSHMKSHNERK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00215160;
90% Identity: -
80% Identity: -