Mbee009982.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Melipona beecheii
Gene Symbol
-
Assembly
GCA_032399605.1
Location
JAUCMO010000463.1:9365970-9372668[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 25 0.17 14 6.5 6.7 1 23 83 105 83 105 0.97
2 25 5.4e-06 0.00044 20.7 2.1 1 23 111 133 111 133 0.98
3 25 0.11 8.9 7.1 1.9 1 23 140 163 140 163 0.94
4 25 4.5e-06 0.00037 20.9 1.3 1 23 169 191 169 191 0.97
5 25 1.2 99 3.8 3.9 2 20 197 215 196 219 0.82
6 25 1.3e-05 0.0011 19.5 2.4 1 23 226 248 226 248 0.97
7 25 2.3e-07 1.9e-05 25.0 1.0 1 23 252 274 252 274 0.99
8 25 0.041 3.4 8.4 1.1 1 23 280 302 280 302 0.94
9 25 6.4e-06 0.00053 20.4 0.6 1 23 308 330 308 330 0.99
10 25 7.2e-06 0.0006 20.3 3.6 3 23 480 500 479 500 0.97
11 25 0.0092 0.75 10.5 2.4 2 23 506 527 505 527 0.96
12 25 0.011 0.89 10.3 1.7 1 23 534 557 534 557 0.97
13 25 3.8e-05 0.0031 18.0 1.4 1 23 563 586 563 586 0.93
14 25 0.055 4.5 8.1 4.2 2 20 592 610 591 611 0.92
15 25 4.3e-06 0.00035 21.0 2.3 1 23 649 671 649 671 0.98
16 25 0.00029 0.024 15.2 0.4 1 23 675 697 675 697 0.96
17 25 0.00081 0.066 13.8 1.0 1 23 820 843 820 843 0.95
18 25 0.0032 0.26 11.9 4.4 1 23 849 871 849 871 0.98
19 25 0.17 14 6.5 7.2 1 23 879 902 879 902 0.94
20 25 0.0027 0.22 12.2 0.5 1 23 908 930 908 930 0.91
21 25 2e-05 0.0017 18.8 2.6 1 23 935 958 935 958 0.96
22 25 0.0039 0.32 11.7 0.5 1 23 964 986 964 986 0.98
23 25 7.4e-07 6.1e-05 23.4 1.0 1 23 990 1012 990 1012 0.98
24 25 0.0044 0.36 11.5 4.9 1 23 1018 1040 1018 1040 0.98
25 25 0.00023 0.019 15.6 4.0 1 23 1046 1068 1046 1068 0.97

Sequence Information

Coding Sequence
ATGTTCATGATGAAGGAACCGCCACCGGGTTCCGCcgaagaaacgaacgttcaACCACCTTCGAAAGAAGATAGCGTTCAGCCGTCGACGAAGGCGAACCAGACGGACGAAAAGGCGAAGGACAGTAGCTCGAGCAGTAGCGATCCTTCCGAAGATCTCGACGACGCTCCGTTGGACTTTCGAAAGAagcaagaagaagagaagaacaaATCGACGAAGCAGATGAATCATCCGAAGAAGAAGGTGCACACCTGCGAGATTTGTTACGCGACGTTCGATCGTAAGAGCAAGCATACGAGACACATGTTCAAGCACAGCAACTCGAGGCCTCACAAGTGTCCGGTTTGCGCGAAGGGGTTCAAGACCACTGCTCACCTAACCAGGCACATGGAGGTGCACGACGAGCCGGTGAACCTGCACGCGTGCAGCCTCTGTGACTTCAAGGCGCGCACCAAGCCTTACCTCAAGATCCACTACATCAGGAAACACACGGAGGACTACAATTACAAGTGCGAACAGTGCGGGAAGATGTTCAAGGTGCAGTCGGATTACACGACTCACGTGAAGGACCACGACACCGAGTCTTGCGTGTGCGACATTTGCGGCTCGTCTTATCCCAGCAAGAGCTCGCTGTACTTTCACAAGCATTACAAGCACAAGACGAAGGTGAAGAAGTTCCCCTGCCAGACGTGCAAGAAGAAGTTCAAGACGCAGAAGAACTTGGACAATCACATGGAGCTGCACAAGATCAAGTACGTTTGCGAGCAGTGTGGCATGGAGTTTAAAACGAAATACGGTCTGACCAAACACCTGAGGACTCATTCCGGCGAGAAGTCTTACCTGTGCGCGATCTGCGGGAAAACGTTTGGTTGCCTCAGCTCTCAGAAGATTCACCTGTTGACGCACGTCGGCGAGAGGCCCTACGTCTGCGACATTTGCGGCCAGAGTTTCACGCAGAGGTCGCCGATGATGCTGCATCGCAGGAAGCATCCCGGTGTGCATCCGCCACCTCCGCCGATCAAAATAACCAACCTGTTGCACGGTGTGCAGGACAAAATAATCGTGAACAAGAGCGGCAAGCGCGATCCGCTCGAGCAAACGTACCTCGTGGTGCAAAACGTTGACAAATATTTCCTGCTACCAGTGGATCACaaagaattaatagaaaaaccCGGCGGAAGGTTATCCATCGCAGGGGACATGGTCATCAAGTCGGAGGAACACGATATACCCGAAGAGACGTCTGAACAATTAATCGAACCAGCTGAACCAGAGAAACCTGAAGCTGAACCACCTCAGACTGAAGAAACTCCGCAATCACGTACGGACGTGCCTGTTGAAATGCCTCTGCAATTGTCACAGTGGTTCGAGCAGGGTTCCAACAGTTCCGGAAGCATTCCAGCATCGTCTACCAGTAACAAGAAGACGTCCAACTGCTGCGACTATTGTTCCAGGGTCTTTCGAAGGAAGTACGAATTGAAGAGACATTTGGCGACTCACAGTAACACGCGGGTCGAGTGTTTGGTGTGTCACCAgttcttgaaaacgaagagGACGCTGAACCTTCACATGAAGCTACACGAGGAGAGCGACAAGATGTTCGAGTGCTCGGAATGCGATTTCAGGTCGAAGCGAATGCCAAGCATGAAGCGTCATCAGATCAGGAAACACTCGATGCACGCCAATTTCAAATGCGACATATGCTCGAGGGTGTTCAAGTTGAACAGCGATCTGACGAGGCACAATCAGCTGAAACACCTGATCGAGCCGTGTTGCTGCGACATTTGCGGAAGGACGTATCGAAACATGTTTTTCCTTCGGAAGCACTGGTACTTGGCCAAGAAGCGGAAGAAGTCTTGCGATCGTATGCGTTGGAGAGGAATTAGGAGCCGAAACGTAGACTATGCGAAGACAGCGCAGAAGAAGGTCGAGTCGAGCCAAGTGTATAATTGTCCCAAGTGCAAGTGGCGAttcaagaacaaaaatttattggaCAGGCACATGCAACGACATTTGCTCAGCTTTAACTGCGAGACTTGCGGAGCCGTGTTTAAGTATAGAGCTTCGTTTTTGAAGCATCAGGAAGCGCACAAAAACGAACAAGaGAAACCAACGCAGCGTTTAACGCCGAAGAACAAAACCACCGCTGCTAATCGAACGGAAGGCCAATTAAAAGCGTCCCGCAAACCTTCTTCGAGCATTCTTCAAAGACGAATCGCGTTTCGAGCCTCGGAGAACCACAGACGCAGAAGCCTCAGACTTTTGAACAAATCCAGTGAGAACAACGAGACGAAAGACGTAAATTTCAAGCATAAAACAATAAACGACAAAGAGAGGacttctttgaaaaattctacgaGCAAGAAATTGTCACTGAATGCTACCAATTGCCCGAACAAAACCAGGCAAGAATCCACGGAACAGGAAGATCTGTACAAGAAGCTGCACGACGGTAGTTATACCTGCGATATCTGTCAGGCGACGTTCAAACAGAAGAGGAAGATTCTCCGTCACATCGGCAGCAAGCACAGCTTCCATCGACCGTTCAAATGTTCCACGTGCGACAAGACCTTCTTGTACAAATGCGACTTGAAGGCTCATCGTTCGATCCACCAGGACGACTCGAGTTTGCTGCACTGCTGCGACAAGTGCGACTACCGCACGAAGTTGAAGACCAACCTCAAGTCCCATTACATCAGGCGGCACACGGACGACTACAAGTTCGCCTGCGAATACTGCGGCAAGCGTTTCAAGATGGAGTGGGACCTCAAGTTCCACGTCGGGACTCACGGCAGCTCGCAGCACATGTGCGATATCTGCGGCAAGTTCTACACGAGCAACTACTCCCTGTACAAGCATCGAAAGGTGGTGCACTTGAACGAGTACAAGTTTCAGTGCGGCGTTTGCAACAAGCGGCTGTTGACGCAGGAGAACCTGGACAGCCACATGCAACAGCACAGCCGAACGTACGAGTGCACAGAGTGCGGGAAGGTGTTCTCCACGAAGAGGTATCTGGCCACTCACACGACCATGCACACGGGCGTGAAACCGTACGCCTGTCACGTTTGCGAGAAGAGCTTTCGTACGACTCACATGAAGAACATGCATCTGTTGACGCATTCTGCGGAGAGGCCGCACGTCTGCGACCTCTGTGGACATTCCTTCAAGAGGAGGGCTTACATGATAGAGCACAGGAGGAAACATCCCGACGCTCATTTGTCCTCGCCACCTGTGCCACTTGTCAGGAAGAACGTCAGAAAACTGATGGTGTGA
Protein Sequence
MFMMKEPPPGSAEETNVQPPSKEDSVQPSTKANQTDEKAKDSSSSSSDPSEDLDDAPLDFRKKQEEEKNKSTKQMNHPKKKVHTCEICYATFDRKSKHTRHMFKHSNSRPHKCPVCAKGFKTTAHLTRHMEVHDEPVNLHACSLCDFKARTKPYLKIHYIRKHTEDYNYKCEQCGKMFKVQSDYTTHVKDHDTESCVCDICGSSYPSKSSLYFHKHYKHKTKVKKFPCQTCKKKFKTQKNLDNHMELHKIKYVCEQCGMEFKTKYGLTKHLRTHSGEKSYLCAICGKTFGCLSSQKIHLLTHVGERPYVCDICGQSFTQRSPMMLHRRKHPGVHPPPPPIKITNLLHGVQDKIIVNKSGKRDPLEQTYLVVQNVDKYFLLPVDHKELIEKPGGRLSIAGDMVIKSEEHDIPEETSEQLIEPAEPEKPEAEPPQTEETPQSRTDVPVEMPLQLSQWFEQGSNSSGSIPASSTSNKKTSNCCDYCSRVFRRKYELKRHLATHSNTRVECLVCHQFLKTKRTLNLHMKLHEESDKMFECSECDFRSKRMPSMKRHQIRKHSMHANFKCDICSRVFKLNSDLTRHNQLKHLIEPCCCDICGRTYRNMFFLRKHWYLAKKRKKSCDRMRWRGIRSRNVDYAKTAQKKVESSQVYNCPKCKWRFKNKNLLDRHMQRHLLSFNCETCGAVFKYRASFLKHQEAHKNEQEKPTQRLTPKNKTTAANRTEGQLKASRKPSSSILQRRIAFRASENHRRRSLRLLNKSSENNETKDVNFKHKTINDKERTSLKNSTSKKLSLNATNCPNKTRQESTEQEDLYKKLHDGSYTCDICQATFKQKRKILRHIGSKHSFHRPFKCSTCDKTFLYKCDLKAHRSIHQDDSSLLHCCDKCDYRTKLKTNLKSHYIRRHTDDYKFACEYCGKRFKMEWDLKFHVGTHGSSQHMCDICGKFYTSNYSLYKHRKVVHLNEYKFQCGVCNKRLLTQENLDSHMQQHSRTYECTECGKVFSTKRYLATHTTMHTGVKPYACHVCEKSFRTTHMKNMHLLTHSAERPHVCDLCGHSFKRRAYMIEHRRKHPDAHLSSPPVPLVRKNVRKLMV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01417841;
90% Identity
iTF_01417841;
80% Identity
-