Basic Information

Insect: Melinopterus prodromus
Gene Symbol: -
Assembly: GCA_964023965.1
Location: OZ030395.1:15257147-15258226[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00031 0.031 16.3 3.7 1 23 111 134 111 134 0.97

2 9 0.00067 0.067 15.3 0.4 1 23 140 162 140 162 0.98

3 9 0.0005 0.05 15.7 0.5 1 23 168 190 168 190 0.98

4 9 1.8e-05 0.0018 20.2 1.1 1 23 197 219 197 219 0.98

5 9 2.4e-05 0.0024 19.9 1.2 1 23 225 247 225 247 0.99

6 9 0.00021 0.021 16.9 0.2 3 23 254 274 252 274 0.97

7 9 2.6e-05 0.0026 19.8 1.1 1 23 280 302 280 302 0.99

8 9 1.3e-05 0.0013 20.7 1.2 1 23 308 330 308 330 0.97

9 9 2.1e-05 0.0021 20.0 1.5 1 23 336 358 336 358 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00031	0.031	16.3	3.7	1	23	111	134	111	134	0.97
2	9	0.00067	0.067	15.3	0.4	1	23	140	162	140	162	0.98
3	9	0.0005	0.05	15.7	0.5	1	23	168	190	168	190	0.98
4	9	1.8e-05	0.0018	20.2	1.1	1	23	197	219	197	219	0.98
5	9	2.4e-05	0.0024	19.9	1.2	1	23	225	247	225	247	0.99
6	9	0.00021	0.021	16.9	0.2	3	23	254	274	252	274	0.97
7	9	2.6e-05	0.0026	19.8	1.1	1	23	280	302	280	302	0.99
8	9	1.3e-05	0.0013	20.7	1.2	1	23	308	330	308	330	0.97
9	9	2.1e-05	0.0021	20.0	1.5	1	23	336	358	336	358	0.99

Sequence Information

Coding Sequence: ATGGATCTAAACATTCCAAATCGAGAAATAAAAACTGAACCAATTGATTCTATTGAAGAGGTGAatattaaatatgaaaattgcACTGAACCCGATGTTCGGAACTCTGTTTGTGACAAACAGATTGAAACCGAGCTGAAAATAGAGTTTGTTAACATAAAAACTGAACCAAATGGTGTCGTGGAACAAGTTAAACAGGAATATTTTGATGTGGAAACTGAACCAACTATAGCTTTCGaggaaacaatcgtaaaatcggAACATTTACAAAATTCCGATAACCACAACATTGACGAACCCCAAATACAGTATATGCGTACCCATTCGGGATTCGAATGCAGCGTTTGCGACTACTCGTGCAAGACCTCATTTAATATTAAACGTCACGTAAAACGGTTACACATGGGACAAAAACACTTTAAATGCGGAACCTGCAATTTCACTGCAGTCCAATCTTACGACCTTAAAATACACCTACAAATTCACGCACTGGTCAAGTTGTACAAGTGTACTACGTGCGAATACGCTGGTAGTACAACGTGGAAGCTCAAACGTCACATGGCAATACACACAGGTGACGGAAAAACTCACAAATGCCCAACGTGTGACTTTACTTCTCCAGATACTGGTAACCTCAAAGTTCATATGAGATCTCATACAGGCGAAAAGCCTTACAAATGCACGATTTGCGTGTACGCTGGGACAACATCGTCGAAACTCAAACGTCACATGACTACGCATGGTGAAAAGATGGATGCATGCGGTATGTGTGATTTTGCTACAAACCAAGCGTATGAACTCAAAAGACATATGTTAAAGCATACCACTGAGAAGTCGTACACTTGTGATGAGTGTGATTATGTTACTGCTAAGATGAGTGATCTCCGAAGGCATAAGAGAAAACATACTGGTGTGAGGCCGCATAGCTGTGCAgtctgtgattatgctagtacacAATCATCAGATCTCAAAAGACATATGTTGAAACATACAAAGGAGAAGCCTTATACGTGCAAGTCTTGCGATTTTGCAGCGTCAACATCGTATAATCTTAAAACGCATATGCAAACACATAATTAA
Protein Sequence: MDLNIPNREIKTEPIDSIEEVNIKYENCTEPDVRNSVCDKQIETELKIEFVNIKTEPNGVVEQVKQEYFDVETEPTIAFEETIVKSEHLQNSDNHNIDEPQIQYMRTHSGFECSVCDYSCKTSFNIKRHVKRLHMGQKHFKCGTCNFTAVQSYDLKIHLQIHALVKLYKCTTCEYAGSTTWKLKRHMAIHTGDGKTHKCPTCDFTSPDTGNLKVHMRSHTGEKPYKCTICVYAGTTSSKLKRHMTTHGEKMDACGMCDFATNQAYELKRHMLKHTTEKSYTCDECDYVTAKMSDLRRHKRKHTGVRPHSCAVCDYASTQSSDLKRHMLKHTKEKPYTCKSCDFAASTSYNLKTHMQTHN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00981956;
90% Identity: iTF_00981956;
80% Identity: iTF_00981956;