Mcra015637.1
Basic Information
- Insect
- Melieria crassipennis
- Gene Symbol
- Aef1
- Assembly
- GCA_963668005.1
- Location
- OY764962.1:102744653-102745754[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0029 40 5.1 0.1 19 48 172 201 167 205 0.85 2 4 6e-06 0.084 13.6 0.0 21 51 202 232 199 233 0.88 3 4 0.0026 37 5.2 0.0 21 51 230 260 228 261 0.87 4 4 8.6e-05 1.2 9.9 0.1 21 47 258 284 255 291 0.88
Sequence Information
- Coding Sequence
- ATGCACATCAAGAATCTGCAGCATGCCCACGCGTCCGCGGCGATGGCCAACTGCGAGATTGTGATTGTGGCTTCGTCGCCCAATAACAGCGCtccgaacaataacaacaacaacaatagtactaacaacaatgacagcacaAACAGATCGcaccaccagcaacagcagcaacagcaacagcagcagcaacaacaacaacaacaacaccagcccCAAGCTACTGTTACCGAAATTCCGATTCCCTTCAACATGCACCTGGCTGCCGCCAATTCGGAGGCGCACGCTGCCGCTCAGGCAGCCGCCATGGCTGCAGCGCAAGCAGCCGCCGCGCAGGCCGCTGCTGCTGAGCAGCAGCAGTCTGGTGCTACTACCGGTGGCGGTACGGGTCATACCATTTTGCAGCAACACTCGTTGGCCCATTTGGTGGCTACGGCGGCCAATAGTCCAGCCTTGTCGGAGCAGCACTACATCGGGCGCGACGTGGTGGCCAACGGGCACAATGAAAGCGCGCCCAGTGGACCGGAGAAACCCTTCCTGTGTAACGTGTGCGAGCGGCGGTTTCGGCAGCTAAGTACACTTACTAACCACGTCAAGATCCACACCGGCGAGAAACCGTACAAATGCAACATTTGTGATAAGACCTTCCGTCAATCGTCCACGCTCACGAATCACCTAAAAATACACACTGGCGAGAAGCCGTTCGCCTGCACCTATTGTCCTAAGAACTTTCGGCAGCTGAGCACCCTGACGAACCATTTGAAGATCCACACAGGTGAAAAACCGTTCGAGTGCGCCGTGTGTAAGAAGCAGTTCCGGCAGTCTAGCACGCTGAACAACCACATAAAGATCCATGTCATGGACAAGGTGTACGTGCCCGTGAAGATAAAGACCGAAGAGGAGGAGGGATGA
- Protein Sequence
- MHIKNLQHAHASAAMANCEIVIVASSPNNSAPNNNNNNNSTNNNDSTNRSHHQQQQQQQQQQQQQQQQHQPQATVTEIPIPFNMHLAAANSEAHAAAQAAAMAAAQAAAAQAAAAEQQQSGATTGGGTGHTILQQHSLAHLVATAANSPALSEQHYIGRDVVANGHNESAPSGPEKPFLCNVCERRFRQLSTLTNHVKIHTGEKPYKCNICDKTFRQSSTLTNHLKIHTGEKPFACTYCPKNFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01133176;
- 90% Identity
- iTF_00979589;
- 80% Identity
- iTF_00979589;