Mcra010719.3
Basic Information
- Insect
- Melieria crassipennis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963668005.1
- Location
- OY764962.1:17092602-17096116[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.2e-117 4.8e-113 378.0 30.6 1 299 282 576 282 577 0.91 2 2 0.26 2.4e+03 -1.9 4.0 220 244 605 629 581 651 0.46
Sequence Information
- Coding Sequence
- atgtcagaTCGCAGCAGTGCTCAGGCTCCGGCTTTGACTCTGGCCCAAGGCAATGGAGCGGCGACGGCTGGCGTTAATTACATTGGCTCAAacgtacacacaaacacagattcACACGCACACTCGGCCACTGTCGAggagaataacaacaacaatagcgtaAACAAAGTGCCAATAAGACAGCAAAGCAACGATGAAATCATCGAGGAGTTCGACTTTAGCGATAGTGATTTGGATGAGTTAAACGACAGCGAAAGCATTGGCAACGGCAACGATAATGGCAACGACAACGATAAcgacagccacagcaacaataatCTGAAAGATGATGACGGCGACGATGCGGGGGGTGATAGGGACGACGTTGGCGGCGGCGTCAGCGTCGGAGTAACCGGTGCAATTGTCACACGGACTGATAATGGCGACTCGGTCGATAACACAACAAGCGATGGCAAGTCAGTCGCTACCGCCGAAGCTGACGCAGCAGTCAGGCCGGCTGATTGCAACGACTCTACAAGTGGAAAACGCAAAACAGCACCGCAAAATTTGGACTTATCGGAGACCACTGCACTTACAACGGAAGCTGAAGTATCATCGACGCCGAACGATTCGTTCTGTCCCATAACACCACGTCGCATTGTCGATGTGGAGAGCGAGTGCGCTCCCATGACGCACTCCAGTTCATCAAAGCCGAACAATAGAAATAGCGGTGACCGGGTTCAGAGTGCAACGACTGCCGCAACTGGCGGCGACGGTGGCAGCAAAGATGCCACAGATGACTGCTACGACGACGAGCCCGATGATGAGTTGATTGTACAATTCCTGGGAGAAGCAAACTGCATTGCTGAAGCACGACTGGCCGCACGAAGGCAGGCGAGAGCCGAGGCACGTGAAATCCGCATGCGTGAGCTGGAGCGCCAGCAGAAGGAGCAGGAACAGAATGCAGATCGCGTCTTCGATATGCACACGTCGTCCGGCATGGATCCGTTGTCCCGATCACGGCTCGCCACTGGCGTTGGCAGCTCGCCGTTGGGCGCGGTTCTCAACAGCACACGCGGCAATTCGATGTCGTCGCGACGCAGCAGTGAAGATTCATTGGAAGAGGAGGGACGCAGCTTGCGCGACATACGGCACGAGCTTAAGGATGTCGAAGAAAGGTTTCGCAAAGCGATGATCGCCAACGCACAGCTGGATAACGAACGTGCCTCACAGACGTATCAGATTCAGCTGCTGAAAGACAAACTGGAAGAGATGGAGGAATCGTATGCGCAGCTACAGCGTGAATTCAAGGAGAAATCGCGCGACTGTAACGCACTCAAACGCAATCTGGATAAGCTTAGCGAGGAGCTGAAATTGGTGCACGGTCAGCTGAGCGAACGGGACGCACTAATTGCGGAACAGGGATTAGTCATTGTGGCCATCGAAAACGAAGACGGTACCGATGCGAAACGTGCTCTAGTCAGTGTGGAGAACGCACAGCTGTTAGGATCTGTACAAGGTTCATTAGATGtgcgacttaaaaaattcaatgaagaaaagcaacaactacTGGCTGAAGTGCAAAAGCTGCAAGAACAAttggaaaattacaaaagtcAAGGCAAAGGCCGCGCTAGTTCGATGAACGGCCCATCAGGATCTGATGAGGATTACGAGGCGCAAAGGGAGGCAAACAAAATCATATCAGACTACAAGTATAAACTGCAAAAGGCTGAACAGGAAATCGCTAGTCTGCAGGCGAGCTTAGCGCGCTCAGAGACACAGGTCATTCGCTACAAAAGTACAGCAGAAGCGGCCGAGAAGGCGGAGGCAGAGCTGAAAATCGAACGGAGGAAACTGCAGCGAGAGAATCGTGAGACCATGGAGCGTCTGGAAGAGTTGGAAACGTCAAACAACCACCTGCTAAAACGAttagacaaattaaaaaacgcaaAGAGTGCACTGCTGAAGGATCTCTGA
- Protein Sequence
- MSDRSSAQAPALTLAQGNGAATAGVNYIGSNVHTNTDSHAHSATVEENNNNNSVNKVPIRQQSNDEIIEEFDFSDSDLDELNDSESIGNGNDNGNDNDNDSHSNNNLKDDDGDDAGGDRDDVGGGVSVGVTGAIVTRTDNGDSVDNTTSDGKSVATAEADAAVRPADCNDSTSGKRKTAPQNLDLSETTALTTEAEVSSTPNDSFCPITPRRIVDVESECAPMTHSSSSKPNNRNSGDRVQSATTAATGGDGGSKDATDDCYDDEPDDELIVQFLGEANCIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMHTSSGMDPLSRSRLATGVGSSPLGAVLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQTYQIQLLKDKLEEMEESYAQLQREFKEKSRDCNALKRNLDKLSEELKLVHGQLSERDALIAEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFNEEKQQLLAEVQKLQEQLENYKSQGKGRASSMNGPSGSDEDYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENRETMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -