Basic Information

Gene Symbol
Trerf1
Assembly
GCA_963082815.1
Location
OY720419.1:64052250-64056677[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 8.6 3.3e+04 -2.5 0.1 5 20 188 203 188 204 0.90
2 2 1.7e-11 6.6e-08 35.0 0.0 2 46 867 911 866 911 0.96

Sequence Information

Coding Sequence
ATGCAATTTACTGAAACGTTTTGTTCTATACAGACGCAACAAAGTCTGGCGAATAAAACCAGTACCACAGCGACGACGCCGCAGGCGAAAGTGACTACAACAACTCCCAGTGCAACTCCTGTCCACTCCGCCAACAAAACAGAGGCCAAACCCGTTGAATGTAATCTTTGCCacagaaagtttaaaaatatcccCGCATTAAATGGCCATATGCGATTACATGgtggatattttaaaaaggatgctgaaaataaaaagtgtGAAAAGAAGGACGCTAGTGGACCTCCCCTTCAAACGGCGAGCGTGAGTGTCAGGGCCTTGATTgaagaaaaaatcataaataaacgCAGCACAAATTCCCAAGCGTCCTCGGCTAATGAAGAAACGGCGCGATCTACAGCACCACCTCTTTTTCCCCTTACTGTGCATTCCTCTGCCACTTCTAATGACTTGGATTCAAAAATTACTTCATTTGTTGTACCTGCGCCACCTCAACAAACAACGGAAAAAGCACGGAGACATTCCGATGCGGATGCCTTTACCATACCAAAACATACTAACACTCAACAGGAAGCAGAAGCTCTAGCAGATCTTATTTTGAAAAAGGGAAAGGTATCTGTAAAAAGAACTACATCTGACCCTGGACAATCCTCCCAACAAGTGATTCAACTGCAGACTGGAGAATCATTAACGCTCACTGGCGTTACATATCAATCTGAAGATGGCGGAGGATATTTTTCTCAAAGTCTTCAAGATGAAGTTTTTACTCAGGTACAAGACACAATGCTTTTACAAAGCGTAGATGCTCAACATTTGACTTCAATTCAGTTTCAAGCCGATTCACTTTTACATGATCAAAGCGAAGACCACCTACAAGATATTGCTTCTTTAGAAGATTATGCCAGTGTAACAGCTAGCCTGCAAGACACGGTACAGTCGCCTTCGTACCAATCTAATCACTCCGTTAATCAGGATTTGCAGGCTGTTTTAGATTCACCTCTGCCAGAAAGTTTAGCTGAATTTAGTACATTTCATTCAGCAACTAACCTGGACATTCCATCGCCTGGATATCAAACCCAATCCCCAGCACAATATAGTGAATCACCTCATACATCCCTTGCTGCTCAATCTCCTTTGCAATCGCCCTTAGTAAGGCACGATTCTCCTGGTTTCGCTTATCCAACCCCTCCAGCGAGTCACGAAGGTCAGAGTCCTTGCTTCGGTCAAAATTCTATGTTACCTATGGTTTCACCAAAACAAAACGATTTTACTCAAGTAGGAGGACGAGATCTGGAGGAACCTCCACAAGCGTCTTCGCCGCTCTCAGCTGCTTTCTTTACTTCAACAATGTCGAGTTCTGCAGCTGTAGAAGAAGCTCTAGAAGAAGTGCTTCCTGGAGAAAGTATATCAACAGATGATATTTATCCATTAACGAATTCTCCCACGCCACAATCGCCACTTTCCGTTGGTCTTACACCAGTTGCCTCGCCTTTGTCGAACATACCGACTTCTTCAGTATCTTCCCCACATCCTTCCACGACCTATACCCCGTCCCCTAGCACTGTAACTTTTCCACTCTCCCCTCATTATTCGTTTCAATCTCAAATGATGCCAAATTCTGAAGATCCCTTATTATCAAGTAGCCCTAAGgacacaaaaaagaaattcgaaTTTAACGGCCTTCCGTTAAAAGTGATAAGTAGTAACGGACTTTTAGAACTAAACAGCTCAAACTTTACTGGGATTCTAGTGGATAGCAAtggtgaattaaaattaatacaaactaACGGAAATACAGTCCACACTAAGAACATTGTTGTAACTGGGCCCTCTTTAGTACACGCACAAAATGTCATTAACAAAGATTCAGAAATGAAAAATGGCGAAAGAACGCACAAGATAAATCCAGTACTACATTGCACCATTCCTAATAAGCAATCACCTCAAGGTATTAGAACTTGCATTGATGTCATCAAACAAGAGGGAAGTGATAACGTCTTTGTTAGTCCAAATATAGTACCTGCAAGTCCAGTTAGGGCTTCACGAAAACGTCCTCGATCTGAACCCCTACAATTACCGGTATTACATCAATCTAGACTTCGAGCAACAAGAAGTCGACCACATGGTTCATCTACATACACCCCTCCACCATTATTAAACCCTACAAGACCAGGATCTGGTTTGTACTGCGGGCTAAAACATAAATTGGCCAGCGATTTGCGCGAagataatttaaacatttggAATAATGAATCCGTTCCAGAATCTGACTCTACACCGCATATTAATATTGGTCCCCAGTTTCAATGTGCAGTTCCTCCTTTTGTCAGAGGAGTGTGTTCGTTAGATCAAGAACCACCTCGCGAATATTTACTGTGGGGTCCTTCGGTAGGCACATACGTTGACAACGAAGTTGACATGTACTTGGATTTCGCGTGCTGCGCAGCAGTCCCTGGTGGAGGACGAAATAAGGAATATGCCATGCATCTTTTGCACATGTGCGGTGGAAACGTTCACGATGCAATGTTGAGGTTAATGCAACCATTTCCTGCTCTTCCGCTCGATCATCCACTACTTCATTATCAATACAGCGAAAGCGATAAATGGTCTCCAGAAGAAATAGAAGCGTTTCAACAAGCACTATTTAAATATGACAAAGACTTTTTCTGCATAGCTCGAGAGATCGGTACAAAGACAACAAAACAGTGTGtgcaattttattatgtttggaAGAAAGTTTGTATCGATGAATATAGGCGAATGAAGCTATCTAGGGAATCTAAGCGTGGTTATGCAAAAGGTTATGAATCCGAATCCGAAGAGAAACCCCACCCAGATGCTAAGTTATTAGGAaTTGCCGATGCTGAATCTCCAATGCCTCTTCAAGAACATAAGAACTTTATATGCGAATTTTCCGACTGCTCAGCGAGCTTCAATTCCAAAGCAGCCCTGAATGGTCATATAAGAATTCATGGGGGAACCGTTCGAAATTCTCCAACTCCATCGacagttttagaaaaacgaaCAGCGCCTACAACTCCTACCTTGTGCCATACAGATTCTTCCGAAGATTATCCTTGTAAGATATGCGGGAAAGTATTTACCAAGATCAAAAGTCGCAGCGCCCATATGAAGTCCCATCGTCCTCCTGACGCCGAACCAGTGAGAAGAAGAGAGAAGGACCTTTCATGTTCCCCTAATTTCGATGTATTCGTACCAAGTCCCTTTAATACTTAG
Protein Sequence
MQFTETFCSIQTQQSLANKTSTTATTPQAKVTTTTPSATPVHSANKTEAKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDAENKKCEKKDASGPPLQTASVSVRALIEEKIINKRSTNSQASSANEETARSTAPPLFPLTVHSSATSNDLDSKITSFVVPAPPQQTTEKARRHSDADAFTIPKHTNTQQEAEALADLILKKGKVSVKRTTSDPGQSSQQVIQLQTGESLTLTGVTYQSEDGGGYFSQSLQDEVFTQVQDTMLLQSVDAQHLTSIQFQADSLLHDQSEDHLQDIASLEDYASVTASLQDTVQSPSYQSNHSVNQDLQAVLDSPLPESLAEFSTFHSATNLDIPSPGYQTQSPAQYSESPHTSLAAQSPLQSPLVRHDSPGFAYPTPPASHEGQSPCFGQNSMLPMVSPKQNDFTQVGGRDLEEPPQASSPLSAAFFTSTMSSSAAVEEALEEVLPGESISTDDIYPLTNSPTPQSPLSVGLTPVASPLSNIPTSSVSSPHPSTTYTPSPSTVTFPLSPHYSFQSQMMPNSEDPLLSSSPKDTKKKFEFNGLPLKVISSNGLLELNSSNFTGILVDSNGELKLIQTNGNTVHTKNIVVTGPSLVHAQNVINKDSEMKNGERTHKINPVLHCTIPNKQSPQGIRTCIDVIKQEGSDNVFVSPNIVPASPVRASRKRPRSEPLQLPVLHQSRLRATRSRPHGSSTYTPPPLLNPTRPGSGLYCGLKHKLASDLREDNLNIWNNESVPESDSTPHINIGPQFQCAVPPFVRGVCSLDQEPPREYLLWGPSVGTYVDNEVDMYLDFACCAAVPGGGRNKEYAMHLLHMCGGNVHDAMLRLMQPFPALPLDHPLLHYQYSESDKWSPEEIEAFQQALFKYDKDFFCIAREIGTKTTKQCVQFYYVWKKVCIDEYRRMKLSRESKRGYAKGYESESEEKPHPDAKLLGIADAESPMPLQEHKNFICEFSDCSASFNSKAALNGHIRIHGGTVRNSPTPSTVLEKRTAPTTPTLCHTDSSEDYPCKICGKVFTKIKSRSAHMKSHRPPDAEPVRRREKDLSCSPNFDVFVPSPFNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00838471;
90% Identity
iTF_00978942;
80% Identity
iTF_00978942;