Msca003143.2
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- stc
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:44580331-44583544[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.8 6.6e+04 -4.0 1.6 15 19 329 333 328 333 0.81 2 13 0.082 1.9e+03 0.9 0.2 4 10 362 368 361 369 0.95 3 13 8.2e-07 0.019 16.9 15.1 1 19 374 391 374 391 0.93 4 13 1.3e-05 0.31 13.0 12.1 3 18 429 444 427 445 0.91 5 13 2 4.6e+04 -3.5 3.1 8 13 450 455 446 458 0.68 6 13 1.8e-07 0.0041 19.0 18.6 1 19 485 503 485 503 0.98 7 13 0.079 1.8e+03 0.9 0.9 6 12 534 540 533 540 0.92 8 13 8.4e-05 2 10.4 16.3 4 18 551 565 544 566 0.86 9 13 0.067 1.6e+03 1.2 12.3 1 11 606 616 606 628 0.91 10 13 6.7e-10 1.6e-05 26.7 15.5 1 18 633 650 633 651 0.97 11 13 3 7e+04 -10.7 15.5 9 18 697 707 684 708 0.70 12 13 8.9e-08 0.0021 19.9 13.3 1 16 744 759 744 766 0.87 13 13 6.7e-07 0.016 17.1 12.2 1 19 776 795 776 795 0.96
Sequence Information
- Coding Sequence
- ATGAGTGGATGGGTAAAGGAAGAAGAGCTATTCATATATCCCTTTTATCCAACAACACAAGCAAACACCATGTCTGACGCATTCCATCGATATCACGACGGACCCGGAGGCAGCggaaacagcaacaacaattaTGTTAACTTCAATCAGTTTATGATGCAGCACAATATCATCGGAGGTGGTGGGTCTCCAAGCGCAAATAGTGGCGATGTTGAACGAAATTCAACAAATCCATTCCATTACAACGGTGGAGGCTTTCAAAACCAAGTAGAAGACTACTATGTGGATGGAGCTAGTAGTGGAAATGGCTCCAGTCGATATAACTACAACCAGCCAAGGTACAATTATTCCAATTCAACTCTTCATGCTACTGCGGCTGAATTTATACCAAGATTTTCAAATCTGTCAATCGCTCATCCTACTAACTCATCGAATGACGTGGTTGACATGCAGAACGCCAACGGTCCTACGACCCACAAATCAGGTCCGCAACATGGCGAGTCATTAGCCAATAACTCTCCGCCACAACGTTACACTGGCGCAACAGGCAAGAATCGCGACACAACTTCCCGTGGTGGTACTGGAGCTGGGGCTTCCCGAAGACAAAACGGTCGTGAGTATCAGAGAAACCAACGTTATGACAACAATCGCAGTAACAAACGCCGTGATGATTGGAACAGAAACCGCGACCGTGTCAATGCATTCAGAGACGAAAAGAACAACATTGAGAATGGCAAAGATAGCCCCCAAGCTTCTCCCGAGAAAAAACCGTCACCGAAGAAGCCCAATCCAGAGAATGAAAAACTATCTCAAAGGGAAAAACTCGTCCGAGAGATCGAAGGGCGTCGTTTGGAGTGCTTGGTGTGCGTCGAGCTTATCAAGAGTCACAACTCGGTATGGTCATGTCACAACTGCTACCACATACTCCATCTAAGCTGCATCATTAAATGGGCATCGAGTTCCAAGTCGGAGGATGGCTGGCGTTGTCCAGCTTGCCAGAATGTGGAAAAAGACGTTCCACGGGATTACTATTGCTTCTGTGGCAATACAAAAAATCCTCAGTTGAATCGTCACGACATTGCGCACAGTTGTGGAGAAGTTTGCGGACGAATTGAAGGATGTTCGCACGCATGCACCCTGCTGTGTCATCCTGGACCGTGTCCACCATGCCAAGCAAATGTCATACGAGAGTGTGGTTGTGGCAAGACTTCTAAAACGATGCAGTGCCATTTAAAGGACTCTATCGAATGCGATGAGAAGTGCCAAAAGCTGCTCAACTGCGAGTTGCATTTGTGCGACGAAAAGTGTCACGAGGGGAAGTGTAAACCGTGCGAGCACAAGGTCGATCAAAAGTGCCACTGTGGCAAGCACGATAGGCAAGTGGCCTGCACTCGAGACTCCCATGAAAAAAAGATGTATTCGTGCGGTAAGCCATGCGGGCGGGATCTCGATTGCGGCAACCACAAATGCAAAGACTGCTGCCACGCTGGAGAGTGCCGTCCGTGCAAACTTAGCCCGGAAATGGTTACATCGTGCCCATGTGGCAAGATGCCAGTGGTTCTTGAGCAAAGAAAGTCATGTTTAGACCCGATTCCTGTCTGCGAAGGTGTATGCCACAAGACTCTCCGCTGCGGTAAGGCAGCTCATCCACATCATTGCACATCAAAATGTCATCTAGGCAATTGTCCTCCATGCAACAAGCAAACTGCCGTCAAATGCCGCTGTGGCCACATGGACCAGATGATAAAATGCCGCCAGCTCTCGACAAGAGCTGATGATGCCCGTTGTAAGAAGCGTTGCGTCAAGAAGCGCTCTTGCGGCAAGCATAAATGCAACCAAGAGTGCTGCATTGACATTGACCATATCTGCCCAATGCCCTGCAATTATACTCTATCATGTGGCAAGCACAAGTGCGACCAACCATGTCATCGTGGAAATTGTCCTCCATGCTACCGCAGTTCATTCGAGGAACTGTACTGTGAATGCGGGGCGGAGGTCATCTATCCGCCGGTGCCTTGTGGTACCAAGAAACCAGTTTGTAAGCGAGTTTGTTCGAGACAACACCCTTGTGAGCACCCAGTTCAGCATAATTGTCACTCTGCAGCCAATTGTCCGCCGTGCATGATGTTCACCACAAAATGGTGCTTCGGACAACACGAGCAGCGTAAAACCATTCCATGCATCCAGGAGAGCTTTAGTTGCGGCCTGGCGTGTAACAAGCCACTGCCATGCGGGCGACACAAGTGCGTAAAGCCATGTCACGAAGGGCCGTGCCAAGCACCTGGCGAAGTTTGTAAGCAAAATTGTACCACACTTCGTACGGCATGCGGGCATAAATGTATGGTGGCATGCCACGATGGAGATTGTCCCGAAACGCCTTGTAAAGAGCtgGTGGAAATTACATGCGAGTGCAGCAATCGTAAGCAATCGCGAACTTGTCAAGACTTCGCCAGAGAGTATCGGCGCATCGCCACCGCACAATTGGCTTCCTCAATGGCTGAGGTTCAGCGTGGCAACACCGTCGAGTTGAGTGACATTTTAGGACCAGTGAAAATCAACAGCAATAAGGCCCTTGAATGCAACGAAGAATGTCGCATTTTAGAGCGTAATCGTCGACTTGCAATCGGTCTGCAAATTCGCAACCCTGATTTGCCCCAGAAGCTATTAACCAAATATTCGGACTTCATCCGCGGTTACGCCAAAAAAGACCCCACTTTGGTGAAGAGCATCTATGAATCGTTGACCACGCTGGTCAAACTGGCCAAGGAGAGTAAACAAAAGTCGCGCAGCCATTCGTTTCCCACCATGAATCGCGAGAAACGTCAGTTGGTTCATGAAATGTGCGAGATGTTTGGTGTGGAATCGGTGGCATACGATGCAGAGCCCAATAGGAATGTGGTCGCAACGGCTTTTAAGGAAAAGtCCTGGTTACCAGCGCAAAGTATCATGGAAGTCATTCAGCGTGAAAATGGACAACGACGTGTCCCAGTACCCAGTAACAACGCTTGGGGCATCAAGCGGTAG
- Protein Sequence
- MSGWVKEEELFIYPFYPTTQANTMSDAFHRYHDGPGGSGNSNNNYVNFNQFMMQHNIIGGGGSPSANSGDVERNSTNPFHYNGGGFQNQVEDYYVDGASSGNGSSRYNYNQPRYNYSNSTLHATAAEFIPRFSNLSIAHPTNSSNDVVDMQNANGPTTHKSGPQHGESLANNSPPQRYTGATGKNRDTTSRGGTGAGASRRQNGREYQRNQRYDNNRSNKRRDDWNRNRDRVNAFRDEKNNIENGKDSPQASPEKKPSPKKPNPENEKLSQREKLVREIEGRRLECLVCVELIKSHNSVWSCHNCYHILHLSCIIKWASSSKSEDGWRCPACQNVEKDVPRDYYCFCGNTKNPQLNRHDIAHSCGEVCGRIEGCSHACTLLCHPGPCPPCQANVIRECGCGKTSKTMQCHLKDSIECDEKCQKLLNCELHLCDEKCHEGKCKPCEHKVDQKCHCGKHDRQVACTRDSHEKKMYSCGKPCGRDLDCGNHKCKDCCHAGECRPCKLSPEMVTSCPCGKMPVVLEQRKSCLDPIPVCEGVCHKTLRCGKAAHPHHCTSKCHLGNCPPCNKQTAVKCRCGHMDQMIKCRQLSTRADDARCKKRCVKKRSCGKHKCNQECCIDIDHICPMPCNYTLSCGKHKCDQPCHRGNCPPCYRSSFEELYCECGAEVIYPPVPCGTKKPVCKRVCSRQHPCEHPVQHNCHSAANCPPCMMFTTKWCFGQHEQRKTIPCIQESFSCGLACNKPLPCGRHKCVKPCHEGPCQAPGEVCKQNCTTLRTACGHKCMVACHDGDCPETPCKELVEITCECSNRKQSRTCQDFAREYRRIATAQLASSMAEVQRGNTVELSDILGPVKINSNKALECNEECRILERNRRLAIGLQIRNPDLPQKLLTKYSDFIRGYAKKDPTLVKSIYESLTTLVKLAKESKQKSRSHSFPTMNREKRQLVHEMCEMFGVESVAYDAEPNRNVVATAFKEKSWLPAQSIMEVIQRENGQRRVPVPSNNAWGIKR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01542617;
- 90% Identity
- -
- 80% Identity
- -