Msca014892.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- nfxl1
- Assembly
- GCA_949752695.1
- Location
- OX456984.1:183141713-183145350[-]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 3 7e+04 -8.1 6.4 15 19 166 170 165 170 0.82 2 21 0.23 5.2e+03 -0.5 0.8 4 10 201 207 200 207 0.95 3 21 1.4e-08 0.00033 22.5 14.0 1 18 215 231 215 232 0.98 4 21 1.5 3.4e+04 -3.1 1.5 5 10 257 262 257 262 0.94 5 21 3.1e-09 7.3e-05 24.6 15.9 1 19 268 287 268 287 0.97 6 21 2.1 4.8e+04 -3.6 1.8 6 10 312 316 311 316 0.89 7 21 1.8e-09 4.2e-05 25.4 12.8 1 19 322 340 322 340 0.99 8 21 0.0093 2.2e+02 3.9 3.5 5 12 364 371 364 371 0.94 9 21 2.6e-08 0.00061 21.6 9.6 1 18 375 392 375 393 0.96 10 21 0.47 1.1e+04 -1.5 0.4 1 5 402 406 402 411 0.75 11 21 3.4e-05 0.79 11.7 15.3 1 18 427 444 427 445 0.98 12 21 4.4e-08 0.001 20.9 13.1 3 19 456 472 448 472 0.85 13 21 0.75 1.7e+04 -2.2 0.7 5 10 499 504 499 504 0.92 14 21 0.0028 64 5.6 11.5 8 18 516 526 508 527 0.88 15 21 0.087 2e+03 0.8 5.3 3 11 540 548 530 549 0.83 16 21 0.49 1.1e+04 -1.6 0.9 6 10 607 611 606 611 0.90 17 21 1.3e-06 0.03 16.2 3.7 1 12 617 628 617 628 0.97 18 21 1 2.4e+04 -2.6 1.5 15 19 641 645 640 645 0.82 19 21 7.9e-06 0.18 13.7 13.0 1 18 656 672 656 673 0.93 20 21 0.75 1.7e+04 -2.2 1.1 8 13 678 683 677 684 0.78 21 21 2.6e-07 0.0061 18.5 12.2 1 17 724 742 724 744 0.86
Sequence Information
- Coding Sequence
- ATGGCAACAAACAGCTCCAAagtaaacaaaccaaaaaattctACCCCGAGCGTGTCAAAAAAATTGGACAATTTCAAGAAAtcacaaacaaataaattcaaggaaatccaaaacaaaaatatggagaTTGCTAAGAAGATAACCGAAAACTACGAATCTAGCTCTGATGAAGAAGAACTTGATGGGGGAAAGATTTTAGAAAAACTGTACAAAAACTATTCTGGAGGCAATGATCAGCTCCAAAAGACAGCAGCTTTTCTTGAGAATGTTCTTCAATCTGGCTCAGCTATATGCCTCATATGTATTGGGTCGGTTAAGAGAGCTGATTCAGTTTGGTCCTGCAAATACTGCTACTGTGTTTTTCATCTATTGTGTGTTAAACGATGGGCAAATGATAGTATAGCACTGATTAAGGATAAAGGTACAGAGGAGCAAGGATATTACAATAACTTGGGTGAATTCATTCCCAAGAAGATTAAATTAGTTAAATGGTGTTGTCCACAATGCCGGAGAGATTATAAACCCGAAGAAAGGCCAACTCAATATGAATGCTTTTGTGGAAAAGAAGTCAATCCGATCAATCAAGAGTGGATTGTCCCGCACTCGTGTGGCGAGACTTGTGGCAAACTGTTGCAGCCCGAGTGTGGTCACAGGTGCATGCTGCTTTGTCATCCCGGTCCATGTCCTCCATGTGCCCAGAACGTCGTTTTGAGTTGTAAATGCGGAAATTCTCCACCAACAACCCTGCGATGCTTCCAAAAAAGTTGGACTTGTAATAGAAAATGCATGCAATTGTTGCCGTGCGGTAAACACAAATGCGAACAAGTATGCCACTCGCCAGGGAATTGCCCTCCGTGCAGCAAGTCAAGCTTGCAAAAGTGCATTTGTCAGAGCGAGGAGGCAAGAAAAAGCTGTTCACAACGAATCTGGCAATGCAAAAAAGTCTGTAATAAGAACTTGGATTGTGGTATCCATAATTGCAAAAAAGTGTGCCATGATGGTGCATGCGGAGAATGCCCTTTGAGTCTTCCAAGAACTTGTCCCTGTGGAAAAACTAAAAAAGTTGCACCGTGTAACGAGCCGATTGATACTTGCGAGGAAACTTGCCACAAAATGCTCTCGTGCGGAAAACATGTTTGCAACCAGCTTTGTCACAAAGGAGACTGCAGTTTGtgtttaattgtaacaaaaaagaaatgtcgATGTGGAATGCACGAAAAAGAGTTACCCTGCTGGAAAACATTCAGCTGTGAGACTAAATGCAAAAGAATTCGAGATTGTGGAAAGCACGCTTGTAACAAAAAGtgttgcGACGATCAATGTCCACCTTGTGATAAGATCTGTGGAAAAGTACTTTCATGCAAGAAACACAAGTGCAGTTCTGTTTGTCATGATGGTCCCTGTTATCCTTGTAAGTTGCAATCCCAAGTGAAATGTCGCTGTGGAAGTACTAGTATAACGGTGCCGTGTGGCAGAGAGCGTCGGGCACGTCCTACTTGCATGGAACCATGCAGaattccTTCCAAATGTCATCATCAAAACAAGCACAAATGCCACAAAGGCGACTGCCCATCATGCATACAAGTATGTGGACTAAAAAACGATACAACGAATTGTCAGCATCCGTGTTCAGCACGCTGTCATGCTGCAGTTCGGGTCGCTTTGAAAAACACCTCTAGCAACATATTTGACTACAAGTTTGATAATtaTGAAATCAAACAACTACCACATCCCAAATGTGAAAAGAAAGTAATGGTATCGTGTATTGGTGGCCATGAGATCGCTGAATGGCCGTGTTGGAATTCAAAGCCGACTTCTTGCCAGCGACTATGTCAACGACGACTAAAATGTGGCAACCATACTTGCGCATTCGTTTGTCATAGTGTCCCAAATTTGGATGACAAGAATGAACAAGCAAGCTGCAGACCATGTACTGAAGGATGTGATTTTAGTCGCCCGCCTGGTTGTTCTCATCGTTGTAAAAAGCCCTGTCATTCAGCGCCGTGTGACCCTTGTTTGGCTCAAATAAAGTCACCCTGCCACTGTGGCCTTTCTCAAGTATATTACAAGTGTTCAGAATACCACGCAATAGATGGAACGCCGACTGAAGttgaagaaatcaaagaaaagctGAAAAGTTGTGGAAATCGTTGTATTAAAAATTACCCATGTGGTCACCGTTGTGCATCTATTTGTCATTCTGGGCCATGTCCAAACCCACAAAACTGCcggaaaaaagttaaaaacttttGCGAATGCAAACGCATTAAAGCAGAAGTAACTTGCGAAAAATCCCGATCCGGAGATGCTTCAATACCATGCGATGACAATTGCCTGATTATAAAAGCCGCTTCGGAAAAATTCAAACATGAAGAAGCCGAGAAACAAAAACTCGCCGAAGAAGAACGTAACCGTATTGAACTGGAACAGTTTGAAAAGAGATTTGGTAAACGAAAGCCGAGAGAAAGAAAAGTCGTAgcacaagaaacaaaaactgaCGACAGTAAAATCAAAATACTAATTGCATCTGCAGTTGTTGCAACTGTGATTGCTGTtgcggttttttatttttattaa
- Protein Sequence
- MATNSSKVNKPKNSTPSVSKKLDNFKKSQTNKFKEIQNKNMEIAKKITENYESSSDEEELDGGKILEKLYKNYSGGNDQLQKTAAFLENVLQSGSAICLICIGSVKRADSVWSCKYCYCVFHLLCVKRWANDSIALIKDKGTEEQGYYNNLGEFIPKKIKLVKWCCPQCRRDYKPEERPTQYECFCGKEVNPINQEWIVPHSCGETCGKLLQPECGHRCMLLCHPGPCPPCAQNVVLSCKCGNSPPTTLRCFQKSWTCNRKCMQLLPCGKHKCEQVCHSPGNCPPCSKSSLQKCICQSEEARKSCSQRIWQCKKVCNKNLDCGIHNCKKVCHDGACGECPLSLPRTCPCGKTKKVAPCNEPIDTCEETCHKMLSCGKHVCNQLCHKGDCSLCLIVTKKKCRCGMHEKELPCWKTFSCETKCKRIRDCGKHACNKKCCDDQCPPCDKICGKVLSCKKHKCSSVCHDGPCYPCKLQSQVKCRCGSTSITVPCGRERRARPTCMEPCRIPSKCHHQNKHKCHKGDCPSCIQVCGLKNDTTNCQHPCSARCHAAVRVALKNTSSNIFDYKFDNYEIKQLPHPKCEKKVMVSCIGGHEIAEWPCWNSKPTSCQRLCQRRLKCGNHTCAFVCHSVPNLDDKNEQASCRPCTEGCDFSRPPGCSHRCKKPCHSAPCDPCLAQIKSPCHCGLSQVYYKCSEYHAIDGTPTEVEEIKEKLKSCGNRCIKNYPCGHRCASICHSGPCPNPQNCRKKVKNFCECKRIKAEVTCEKSRSGDASIPCDDNCLIIKAASEKFKHEEAEKQKLAEEERNRIELEQFEKRFGKRKPRERKVVAQETKTDDSKIKILIASAVVATVIAVAVFYFY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223893;
- 90% Identity
- -
- 80% Identity
- -