Msca023169.1
Basic Information
- Insect
- Melanostoma scalare
- Gene Symbol
- clz9
- Assembly
- GCA_949752695.1
- Location
- OX456985.1:43416644-43419155[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-08 2.8e-05 25.6 0.0 4 39 24 60 21 64 0.89
Sequence Information
- Coding Sequence
- ATGGCAAGAACAAATGAGAAGGCGCAAgcaaaaaatgccaaaaagcGAGTTATTTCTTATAAAGACTCAGATTTGGAGCAGGCTTTATTTGAGATCCGCACCAACAAACTGCCAATCCGAGCAGCAGCCAGAAAGTTTAAGATCCCAAGGACGACTCTGCAGGACAGAGTACATAATAGAACTGCCGATAACCTTGGGAAATTTGGTCCCTGCCCTGTGCTGTCTGCAGAGGAAGAACTTAAACTAAAATACTGGCTTATAAACCTAGCTAAATGTGGTTTTCCTCAAACCTCGGAAAATCTACTGAGAACGGTGCAAGCTATTCTTCAAGAAGATGGGCGTAAAACTCCTTTTAAGGACAACAAGCCAGGGAAAAAATGGTACTACAGTTTCATGCGACGCCATCCCGATCTAAGCCTTCGAACAGCTGAAACTGTCTCTAAAGCCCGCGCCCAAGTTACCGAGGAAGGGATAAAGAAGTGGTTTGAAGAGCTTAAAGAGTACCTAGCCCAAGAAGACTCTTTAGACATTCTTGAGGACTCTTCCCGAATATTCAACGCGGACGAAACGGGATTCAGTATGGCTCCAAAAACTGGGAATGTCATTGCCCCAAAAGGAATCAAAAACCTTTATGAAATCAAGGCAGCcaacgaaaaagaaaacctaACTGTGCTGATGACTTTCTCCGCAAATGGAACAACACTACCACCTATGGTTGTTTTGCCTTACAAAAGGTCGCCCAGCTGGCTGAAATCCATCCAAAATAAGAAGCCTGACTGGGTTTTTGGCAAAACAGACAGTGGATGGATGCGGGGAGAAACATTTCTTCAGTATGTGAAGGATGGCCTGAACAAATGGATTTCTAACAATGGTGTCAAACGtccagttttgttttttgttgatgGACACGCTTCTCACATGTCTCTAGAACTCAGTGACTtctgcagcagcaacaacataaTATTGTATGCGCTTCCTCCAAACACCACTCATATCCTTCAGCCGGCTGATGTAGGTGCCTTTAAAGGACTGAAGTCAGATTAcagaaatattttgaatgagTGGCGAAAACGTTCGGGTAACCACGGCAGCACGATGAACAAAGAGAATTTTTGCGACGTGCTAGAAGAGCTCCTTAATTACAAAGATAGGACAACCATCATCCAAAATGCCTTCAAAAAGTGTGGATTATTTCCATTTGATCCAAATGCCGTGGACTACTCGAAATGTGTGAAAAATACtcttcaaaatttgaataacGTTTCTGATATTGGTGGTGATGCTTGCAGCAGCTCTAGTCTTGGAGATATTGGTCCTGTGGTAAATTTTAGAGGCGATGTAGACTCTCAGGCAAACATTGGAGCTGATTCTGGTGATATGTCTGCTCGCGATCCTGATGGTGGTAGTCCTGGTGGTTTTCCGGATATTGGATTAGTTGAACAACCTTACGAAGACTTTGTGGTCAACTTAAACTGCAATGTGGATGGTGGGGGCAGTAATGCCAAAGATATTACCCGTGCAAGTTTCATTGAAGCTGAAAAAGTTATACTTCTCCTAAAAGATaaacttgaaatgaaaaacatcgaCTATGAAGTTATTCTGGATCTCATTCGACAAGCTAAGAAAAACATTGTTGATGTTTCTAAGAGCACCCAAGGCCAAGACATTGAAGGGATTTATGAAGTCACCAGCGACGGCACCCTGATGAGATTACCCCAGCTCAGTGCTGGCAATTTTGAGGCAGGGAATAATCAACATCCATCAGAAGAAATCATGGaTACTATGGAGATGGAACTCCGACATGAAACAAGTTTTTCATCGCATGGGACCATTTTGCAAGATATTTCTAGCCAAATTTTGCAGGAAACCACAAGTCCAACAACTCAGCCACACTCTTCAAAAAGTCCGtcaatcttcaaaaaatttcttaaataccCTAAACCAATAAGAGACTCGGTAAAACGGTATTTCAATTGTCCGAAACCACCTATGTCCATATCTTCGCCGGCTTGGAAAGCTttccaacaaaacaaagaagctgAGAAAAGACGTATAGCCGCTGAAGTGGAAGAAAGAAAGCTGGTTCGacagaagaaaaaagaagagaagtcTGTAAAAGCCGCTGAAgtcgaaaaaagaaaacaaaaacgaagaGAAAACAACAAGCCCTCgactaaacgaaaaaaaattgtgccaAAATGTCCGTCGTGCAATGAAGATGTTCTTACGGACGTAGAAGAAGATGGGCTTAAGAACTTAGGGTGTGACAGTTGTGAAAAGTGGTTTCATCTTAAATGTACCAAATTGTCAGCCCTGCCCTTTGCAGATGCTGAACTAAAAGACTTTATATGTAACAATTGTGATAATATTCTTTCCAAAATGTGA
- Protein Sequence
- MARTNEKAQAKNAKKRVISYKDSDLEQALFEIRTNKLPIRAAARKFKIPRTTLQDRVHNRTADNLGKFGPCPVLSAEEELKLKYWLINLAKCGFPQTSENLLRTVQAILQEDGRKTPFKDNKPGKKWYYSFMRRHPDLSLRTAETVSKARAQVTEEGIKKWFEELKEYLAQEDSLDILEDSSRIFNADETGFSMAPKTGNVIAPKGIKNLYEIKAANEKENLTVLMTFSANGTTLPPMVVLPYKRSPSWLKSIQNKKPDWVFGKTDSGWMRGETFLQYVKDGLNKWISNNGVKRPVLFFVDGHASHMSLELSDFCSSNNIILYALPPNTTHILQPADVGAFKGLKSDYRNILNEWRKRSGNHGSTMNKENFCDVLEELLNYKDRTTIIQNAFKKCGLFPFDPNAVDYSKCVKNTLQNLNNVSDIGGDACSSSSLGDIGPVVNFRGDVDSQANIGADSGDMSARDPDGGSPGGFPDIGLVEQPYEDFVVNLNCNVDGGGSNAKDITRASFIEAEKVILLLKDKLEMKNIDYEVILDLIRQAKKNIVDVSKSTQGQDIEGIYEVTSDGTLMRLPQLSAGNFEAGNNQHPSEEIMDTMEMELRHETSFSSHGTILQDISSQILQETTSPTTQPHSSKSPSIFKKFLKYPKPIRDSVKRYFNCPKPPMSISSPAWKAFQQNKEAEKRRIAAEVEERKLVRQKKKEEKSVKAAEVEKRKQKRRENNKPSTKRKKIVPKCPSCNEDVLTDVEEDGLKNLGCDSCEKWFHLKCTKLSALPFADAELKDFICNNCDNILSKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00188028;
- 90% Identity
- iTF_00188028;
- 80% Identity
- -