Mror015088.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- Aef1
- Assembly
- GCA_963583895.1
- Location
- OY757189.1:1224598-1225670[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00061 11 7.2 0.2 16 48 202 234 193 238 0.84 2 4 1.8e-05 0.33 12.1 0.0 21 52 235 266 232 267 0.89 3 4 0.0043 81 4.5 0.1 21 51 263 293 260 294 0.87 4 4 9.9e-05 1.8 9.7 0.1 21 47 291 317 288 324 0.88
Sequence Information
- Coding Sequence
- ATGcatataaaaactttgcaacatgttCATGCAGCTGCTGCAGCAGCCATGCCGAACTGTGAAATTGTAATTGTGTCATCCTCGCCCAatcataataacaataataacaacaattcaaataataacaacaattcaaataataacaacaatcacagtaacaacaataataataataatgaaagtaCAAATGGTGGATCGAGTAATGGCAGCGGTGCTGCGGCAGGTGGTAATGGCAGTGGAACTAACAATGGCCTCCAGcatcaacaacagcaacatgGTTCCTCGGCACCAACACCGACTGAGATTCCAATACAATATATGCATTTGGCAGGAGTAACAGCAGAAGCTCATGCAGCTGCTCAAGCAGCTGCTATGGCTGCTGCCCAAGCTGCTGCTGCTCAAGCAGCTGCTGCCGAACATGGTAGTGGCACTGCTCCACCACCGGGCAGTACTCTGGCGCATCATCATGCCATATTGCAGCAACATCCATTGGCTCATCTGGTGGCCACTGCTGCTCACAGTCCTGCCGTATCTGAACAACACTATATAGCCCGCGATGCTACCGTCCTGACTAATGGCCATAATGGCAACTCAACGTCGGCATCAAGTGGATCTGCACCCGAAAAACCATTTCAATGCAATGTCTGCGAGCGGCGATTCCGCCAACTAAGTACCCTGACAAATCATGTCAAAATCCATACTGGAGAAAAGCCATACAAATGCAACGTGTGTGAGAAAACCTTTCGTCAGTCGTCTACTTTGACTAATcacttaaaaatacatactGGCGAAAAGCCATTTAATTGTACCTATTGTCCAAAACATTTTCGCCAACTAAGTACATTAactaatcatttaaaaattcatactgGTGAGAAACCTTTTGAATGTGCCGTTTGTAAGAAACAATTCCGTCAATCCAGTACTCTTAACAATCACATAAAAATTCATGTTATGGACAAAGTCTACGTTCCCGTTAAGATTAAAACTGAGGAAGAGGAAGGATGA
- Protein Sequence
- MHIKTLQHVHAAAAAAMPNCEIVIVSSSPNHNNNNNNNSNNNNNSNNNNNHSNNNNNNNESTNGGSSNGSGAAAGGNGSGTNNGLQHQQQQHGSSAPTPTEIPIQYMHLAGVTAEAHAAAQAAAMAAAQAAAAQAAAAEHGSGTAPPPGSTLAHHHAILQQHPLAHLVATAAHSPAVSEQHYIARDATVLTNGHNGNSTSASSGSAPEKPFQCNVCERRFRQLSTLTNHVKIHTGEKPYKCNVCEKTFRQSSTLTNHLKIHTGEKPFNCTYCPKHFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYVPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00655752;
- 90% Identity
- iTF_00975918;
- 80% Identity
- iTF_00975918;