Mror030591.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757191.1:80655864-80663038[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0003 0.033 15.7 3.4 1 23 265 287 265 287 0.98 2 11 0.0015 0.16 13.5 10.5 1 23 293 315 293 315 0.96 3 11 0.00011 0.012 17.0 6.6 1 23 321 343 321 343 0.98 4 11 0.00028 0.031 15.7 2.3 1 23 349 371 349 371 0.97 5 11 0.00019 0.021 16.3 0.8 1 23 377 399 377 399 0.96 6 11 5.4e-06 0.00058 21.2 0.2 1 23 405 427 405 427 0.98 7 11 5e-05 0.0054 18.1 1.1 1 23 432 454 432 454 0.97 8 11 0.00024 0.026 16.0 0.1 2 23 461 483 460 483 0.90 9 11 0.0026 0.28 12.7 0.1 3 23 576 596 574 596 0.97 10 11 0.013 1.4 10.5 3.6 1 23 734 756 734 756 0.96 11 11 0.0065 0.71 11.5 4.9 5 23 769 787 761 787 0.92
Sequence Information
- Coding Sequence
- ATGTGTGCTGCTCAAAGTAATCCAACACAAAGTTTTGGTCCTTATGCCTGGGGTTTTGCTGATAATACTCGTGGTCCCGAGTCTGTATTGGAAATTTCGCCCAACATAAACTACACCGTCAGCAGTGAATCTATGCCATATTTATTATCCACTGATGGATCATTAACAGTGCAAAAAGATGTTAAAGGAGCATTGGCTGGCAATAAAGGTGTAGTGCGGCGTATGGTGTTGGTCAATGATCCGTTTGCATCAGGAGCTCAAAGAGTAATAACTGGTGCTACGGGTTCAGCCACATCGGTTGTTAAGAAACCAGACCAACAACAAcatcagcagcagcaacagcaagttttaaacttaaattgtgaCAAAAATTATCTTCTTGTCGATCAAACAGATCAGTCCCATTTATCGAACGGTATTGTCGATTCAAAAACCCAAACCATATTAACGACAGCTGCAACAGCCAATAAAGCACATTTTAGTCCCATTGGTCCGATCCATTTAACGGCCGAAGAATGTAATGAAATATTAATGAAACGTGCCTTGGCCGCCACCCATCCACAAACAATAACGTCAAACGATGGTCATAATACAACTACAAGTGACATGTTGCCTGGTATATCAGTGCAAGTTCAAAAAGTTATACAAGGTTTAGAAGACAATGACGAAACGGAAGTGAATGCATCCAATTTGAAATTAGAACCTGGAACATTGGAACTCTCACCGAAAACAGAACTTCAAGACCCCATACATTTTACTGATGCCGAAGCCACTATTAAAAAAGAACGTCCTTACAGTTGCGATGAATGTGGCAAGTCATTTCTATTAAAACATCATTTAACTACTCATGCTAGAGTACATACAGGAGAACGACCTCACATATGCACACATTGTGGCAAAAGTTTTGCACACAAACACTGTTTAAATACCCATTTGCTGCTACACTCCACCGATCGCCCTTATCAGTGCACAGAGTGTAAGAAGAGTTTTACACTAAAACACCATTTGTTGACCCATTCTAGGGTTCATTCACGTGATCGACCATTTGTTTGTCAAGAGTGTGGACGTACATTCCCTCTAAAACGTCACTTGGTTACCCATAGTAAATATCATGCTGGCGAAAGACCGTTTGTTTGCGACGAGTGTGGCGAAAGCTTCTCCCAAGGAAATCATCTTGTTATGCATTCACGTTTTCATGGTTCTGTAAATCCATTCGTTTGTCAGGATTGTGGTGTTACATTTCCGCGTAAATTTCAATTGGTTAATCATGCTCGCATTCACGGCAAAGTACCACACTCCTGTACAGTGTGCGGCAAAGAATTTTTGCAAAAGCGTACATTAGTGGCACATATGCGtGTTCATACTGGTGATCAACAGTTTCCTTGTATAAGTTGCGGCGAAGGTTTCAATACAAGAGCGGATTTAAATCAACACATACGAACCACACATGGCGGTGTCAATCCAAACTCTTCAAGTACCACTTCAGCGCCGTCCACCACGATAATATCACAGCAACAACCAACACAAACAATACAACAAGTACACCAAACACAAGCCCAGACTACacatcagcaacaacagcagcagcaacaacaacagcaacagggACATCAAGTTCAAAATAATCATCCACAAACTATAACGGTAGTTAGCAATCCCAACAACTCGGCTTTGCTAACGGTCACCTCAAATGATGCCAATAATTCGGCCAGACCACAATTTGGTTGCCGGGAGTGTGGAAGTGCCTTCAATAGCCGCGAAGCTTTAGCTCTTCACCTGCGTTTACATACCGGTGATAAGAGTCTAATGACCGATTTGTGTGCTTTAACTGCCGCCTTGCCTACGCACTTACTAAGCACAAGCGGTATGAGTTCGGGTACCACGGTAGTGGCTGCCAATCCCAATATTATAGCCCAAAACCAAATGCCAGTTCAAATCATATCATCAACGGGTCAAGTTGTATCACAGACAACACTGGTGCAGGCCGCCGCTACGACTCATCCGCAGACACTTGTTCCCGGAATGCAATCAGTTGGCTTACAGCAGCAACATTTACAAAATGGTGCTGCTcatcatcaacaacaacaagagcagcagcagcatcaacaacagcaacaacaacagcagcagcaacaacaacagcatcaacaacaacagcaacaacagcaaacaCAACCAACACCCACCAAACCTAAAACTCACTTCTGTACTAGCTGCGGTAAAGGTTTTGCTGCTAAACACGGTCTCATGCAACACAATCGACGTCATCCAAACGGAGGTTGTACGGTACGCACTCATGTCTGCGAATGTGGTAAGGCATTCTTCCAAAAGAATCATCTAATGCTGCATCAGCGACAGCATTTGGAAACGAAAGCACCAACCATTTCGCAGCAACAGGTGTGTTGA
- Protein Sequence
- MCAAQSNPTQSFGPYAWGFADNTRGPESVLEISPNINYTVSSESMPYLLSTDGSLTVQKDVKGALAGNKGVVRRMVLVNDPFASGAQRVITGATGSATSVVKKPDQQQHQQQQQQVLNLNCDKNYLLVDQTDQSHLSNGIVDSKTQTILTTAATANKAHFSPIGPIHLTAEECNEILMKRALAATHPQTITSNDGHNTTTSDMLPGISVQVQKVIQGLEDNDETEVNASNLKLEPGTLELSPKTELQDPIHFTDAEATIKKERPYSCDECGKSFLLKHHLTTHARVHTGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCTECKKSFTLKHHLLTHSRVHSRDRPFVCQECGRTFPLKRHLVTHSKYHAGERPFVCDECGESFSQGNHLVMHSRFHGSVNPFVCQDCGVTFPRKFQLVNHARIHGKVPHSCTVCGKEFLQKRTLVAHMRVHTGDQQFPCISCGEGFNTRADLNQHIRTTHGGVNPNSSSTTSAPSTTIISQQQPTQTIQQVHQTQAQTTHQQQQQQQQQQQQGHQVQNNHPQTITVVSNPNNSALLTVTSNDANNSARPQFGCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPTHLLSTSGMSSGTTVVAANPNIIAQNQMPVQIISSTGQVVSQTTLVQAAATTHPQTLVPGMQSVGLQQQHLQNGAAHHQQQQEQQQHQQQQQQQQQQQQQHQQQQQQQQTQPTPTKPKTHFCTSCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKAPTISQQQVC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00259974;
- 90% Identity
- iTF_01162431;
- 80% Identity
- -