Cvom015966.2


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Calliphora vomitoria
Gene Symbol
-
Assembly
GCA_942486075.2
Location
CALNXM020000524.1:41309-53077[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 0.00041 0.02 15.5 3.4 1 23 250 272 250 272 0.98
2 11 0.002 0.098 13.4 10.5 1 23 278 300 278 300 0.96
3 11 0.00015 0.0073 16.9 6.6 1 23 306 328 306 328 0.98
4 11 0.00067 0.033 14.9 2.3 1 23 334 356 334 356 0.96
5 11 6.1e-05 0.003 18.1 0.6 1 23 362 384 362 384 0.97
6 11 7.2e-06 0.00036 21.1 0.2 1 23 390 412 390 412 0.98
7 11 9.3e-05 0.0046 17.6 0.7 1 23 417 439 417 439 0.96
8 11 0.0027 0.13 12.9 0.1 1 23 445 468 445 468 0.91
9 11 0.0035 0.17 12.6 0.1 3 23 554 574 552 574 0.97
10 11 0.03 1.5 9.7 2.7 1 23 700 722 700 722 0.95
11 11 0.0088 0.43 11.3 4.9 5 23 735 753 727 753 0.92

Sequence Information

Coding Sequence
ATGTGTGCTGCTCAAAGTAATCCAACACAAAGTTTTGGTCCTTATGCCTGGGGTTTTGCTGATAATACTCGAGGTCCCGAGTCCGTATTGGAAATATCGCCCAACATAAACTACACTGTTAGCAGTGAATCTATGCCATATTTGTTATCCACTGATGGATCATTAACAGTGCAAAAAGATGTTAAAGGAGGATTAGCTGGCAATAAAAGTGTTGTACGGCGTATGGTATTGGTCAATGACCCATTCGCAACAGGAGCTCAAAGAGTAATCACTGGTGCTGCCGCCGCCTCCTCCGTGGTTAAGAAACCAGATCAACAACAACAAGTTCTAAACTTAAATTGTGACAAAAATTATCTTCTTGTCGATCAATCAGATCAGTCCCACTTATCAAACGGTATTGTCGATTCGAAAACACAAACCATATTAACGACAGCTGCAGCAGCTAACAAAGCACATTTTAGTCCTATTGGTCCGATACACTTGACGGCCGAGGAATGTAATGAAATTTTAATGAAACGTGCTTTGGCCGCCACACATCCACAAACAATAACATCGAATGATGGTCATAATACAACTACAATGCAAGTACAAAAAGTTATACAAGGTCTAGAAGACAATGACGATTCACAAGGTAATGCGCCTAATTTGAAATTAGAACCTGGAACATTGGAACTCTCACCGAAAGCAGAATTACAAGACACCATGCATTTTACTGATGCCGATACCACCATTAAAAAGGAACGCCCTTACAGTTGTGACGAGTGTGGCAAATCATTTTTACTGAAACATCATTTAACTACTCATGCTAGAGTACATACAGGGGAACGACCCCATATCTGCACACACTGTGGCAAAAGTTTCGCCCACAAACACTGTCTAAACACCCACTTGCTACTACACTCCACCGATCGCCCTTATCAGTGCACAGAGTGCAAAAAGAGTTTCACACTAAAGCACCATTTGTTGACCCACTCGAGGGTCCATTCACGTGATCGACCATTTATTTGTCAGGAATGTGGCCGTACATTCCCACTGAAACGTCACTTGGTGACCCACAGTAAATATCATGCTGGTGAACGACCGTTTGTCTGTGACGAGTGTGGCGAAAGCTTTGCCCAAGAAAATCATCTTATCATGCATTCACGTTTTCATGGTTCTATAAATCCGTTTGTATGCCAGGATTGTGGTGTTACATTTCCGCGTAAATTTCAATTGGTCAATCATGCTCGTATTCACGGCAAAGTACCGCATGCCTGTACGGTGTGCGGCAAAGAGTTTTTACAAAAAAGGACATTAGTGGCACATATGCGTGTACATACTGGTGATCAACCATATCCTTGTATAAGTTGCGGCGAAGGTTTTATGACAAGACCGGATTTAAATCAGCATATACGCACCACCCATGGCGGTGTCAATCCGAACTCTTCAAACACCGCTGCAGTGCCGTCCAACGCGTTAATTTCACAACAGCAGCCAACACAAACAATACAACAAGTACACCAAACACAAGCCCATTCTACACATCAGCAACAGCAACAGGGGCATCAAGTTCAAAATAATCATCCACAAACTATAACGGTGGTTAGCAATCCCAACAATTCGGCCTTGCTAACAGTCACCGCCAATGATGCCAATAATTCGGCCAGACCACAATTTGGTTGCCGGGAATGCGGAAGTGCCTTTAATAGTCGCGAAGCTTTAGCTCTCCACCTGCGTTTACATACCGGTGATAAAAGTCTTATGACCGATCTATGTGCTTTAACCGCCGCCTTGCCTACTCACTTACTAAGCACAACCGGTATGAGTTCTGGTGCCACGGTTGTGGCCGCCAATCCCAACATTATAGCCCAAAACCAAATGCCAGTTCAAATCATATCATCAACGGGTCAAGTTGTATCACAGACAACACTGGTGCAGGCCGCCGCTACGACTCATCCGCAGACACTTGTTCCCGGTATGCCGGGTTTACAGTCCCAACAGCAGCAGCAACATTTACAAAACGGTGCTGCCCACCAGCAGCATCAACAGCAACAGCAGCAACAACAGCAGCAGCAACAACCACAGCAAACACAACCAACACCCACCAAACCCAAATCACATTTCTGCGCCAGTTGTGGCAAAGGTTTTGCCGCCAAACACGGTCTCATGCAACATAACCGTCGCCACCCGAACGGCGGCTGTACGGTGCGCACCCACGTGTGCGAATGTGGCAAGGCATTCTTCCAAAAGAATCACCTAATGCTACATCAACGTCAACATTTGGAAACGAAACCACCCATTTCGCAGCAACAGCTTGATTTTATTCTTCGACAGGATGCCAACCAACAGCAACAGCAGCAACATGTGCAACAGCAGGCACAGCAATTGGTCCAACAACAGCAACAAAATCAACAACAACAACAACAGCAGCAGCAACAGCAACAACAGCAAAATCAACAACAGCACCAGCAGCAACAACAACAAATGACCACCAGAGAAGTAATGATTGGCAATCAAGCTGTACACGTGCAAGTGCTACAAGGTACGAATACAGCACAAGTTATTAAATATGAAATCAATATACCACAAGAGAATCAGAATATTGAATGA
Protein Sequence
MCAAQSNPTQSFGPYAWGFADNTRGPESVLEISPNINYTVSSESMPYLLSTDGSLTVQKDVKGGLAGNKSVVRRMVLVNDPFATGAQRVITGAAAASSVVKKPDQQQQVLNLNCDKNYLLVDQSDQSHLSNGIVDSKTQTILTTAAAANKAHFSPIGPIHLTAEECNEILMKRALAATHPQTITSNDGHNTTTMQVQKVIQGLEDNDDSQGNAPNLKLEPGTLELSPKAELQDTMHFTDADTTIKKERPYSCDECGKSFLLKHHLTTHARVHTGERPHICTHCGKSFAHKHCLNTHLLLHSTDRPYQCTECKKSFTLKHHLLTHSRVHSRDRPFICQECGRTFPLKRHLVTHSKYHAGERPFVCDECGESFAQENHLIMHSRFHGSINPFVCQDCGVTFPRKFQLVNHARIHGKVPHACTVCGKEFLQKRTLVAHMRVHTGDQPYPCISCGEGFMTRPDLNQHIRTTHGGVNPNSSNTAAVPSNALISQQQPTQTIQQVHQTQAHSTHQQQQQGHQVQNNHPQTITVVSNPNNSALLTVTANDANNSARPQFGCRECGSAFNSREALALHLRLHTGDKSLMTDLCALTAALPTHLLSTTGMSSGATVVAANPNIIAQNQMPVQIISSTGQVVSQTTLVQAAATTHPQTLVPGMPGLQSQQQQQHLQNGAAHQQHQQQQQQQQQQQQPQQTQPTPTKPKSHFCASCGKGFAAKHGLMQHNRRHPNGGCTVRTHVCECGKAFFQKNHLMLHQRQHLETKPPISQQQLDFILRQDANQQQQQQHVQQQAQQLVQQQQQNQQQQQQQQQQQQQQNQQQHQQQQQQMTTREVMIGNQAVHVQVLQGTNTAQVIKYEINIPQENQNIE