Mror020494.1
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- -
- Assembly
- GCA_963583895.1
- Location
- OY757190.1:2481416-2496353[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.23 25 6.6 1.2 1 23 249 272 249 272 0.90 2 24 0.00088 0.096 14.2 1.4 1 23 278 301 278 301 0.97 3 24 0.0012 0.13 13.7 0.7 2 23 331 352 330 352 0.96 4 24 0.15 17 7.2 0.6 2 23 461 482 460 482 0.97 5 24 0.00028 0.031 15.8 2.0 1 23 526 548 526 548 0.98 6 24 0.15 17 7.1 0.7 2 20 561 579 560 582 0.94 7 24 0.015 1.7 10.3 2.3 1 23 663 686 663 686 0.95 8 24 0.003 0.32 12.5 0.4 1 21 693 713 693 714 0.94 9 24 0.069 7.4 8.2 0.4 2 23 726 748 725 748 0.94 10 24 0.00067 0.073 14.6 0.4 2 23 763 784 762 784 0.97 11 24 2.5e-07 2.7e-05 25.4 1.9 1 23 790 812 790 812 0.98 12 24 0.4 43 5.8 3.5 1 23 960 984 960 984 0.96 13 24 3.1 3.3e+02 3.1 1.4 1 23 1021 1044 1021 1044 0.93 14 24 3.7e-05 0.004 18.5 4.3 1 23 1054 1077 1054 1077 0.98 15 24 0.0039 0.42 12.2 1.1 2 23 1082 1103 1081 1103 0.96 16 24 0.00035 0.038 15.5 0.2 2 19 1130 1147 1129 1149 0.94 17 24 0.0034 0.37 12.4 4.3 1 23 1205 1228 1205 1228 0.97 18 24 0.019 2 10.0 1.1 1 23 1265 1288 1265 1288 0.96 19 24 0.057 6.2 8.5 6.1 1 23 1318 1341 1318 1341 0.97 20 24 5.8e-07 6.3e-05 24.2 0.8 2 23 1370 1391 1369 1391 0.95 21 24 8.8e-06 0.00095 20.5 0.2 1 23 1397 1419 1397 1419 0.98 22 24 3.3e-06 0.00035 21.8 3.0 1 23 1425 1447 1425 1447 0.98 23 24 1.7e-05 0.0019 19.6 6.2 1 23 1453 1475 1453 1475 0.99 24 24 0.29 32 6.3 1.1 1 21 1481 1501 1481 1505 0.91
Sequence Information
- Coding Sequence
- ATGAGCAGTCTTTTAAAAAACGAGTGTTTAATAAATGGAATTGAGTATAAATGCCGCACTTGCTTTGATCCTGGTCAAACAATTTTCCATTTAACAGATGAGGCGAGTAGAACAAAAACTTGGACGGATTTGTTAAAGGACATTGCTCAAATACagGATAATAATGAAGAACTCCTACCTAAAACCATATGCTGCACTTGTTCCGACAAATTGAAAAGTTCATATGCGTTTATACTTCAGATTcatgaagtaaataaaaaatacaatcagTTGCTAACGTATTGCCAAGATCCACTACAGGAAATTGATGATTTTGCCGATTGCTTAAAAGAATCAGCAATTGATTTGCCATTAGAGCAGTTCATGCCAGAAATAAAACTGGAAGAAGATCTGACAACTTCATCGTTTAACACTGAATTAATTACTAACTTTACTGCAAGCAAACCAAAATTGAGAAATTCAAGATATATTTTGgaagaaactttaaataaaaaccccGCCCTAgcattaaaacaaatcaaaaaacacaaaagttatTCAAAGAGAAACCAGAACTGTGGCAATGAATGCGACGTCGATAATGATTACAAGAATGAACCCAGTTCAACATCTTCCGATGAAAGCGATTATGTTCCATTGAAAAAACTAAAGAGAGAAAAGGGCAAAACAAGTCAAACGgttaaacagaaaaaaggtCGAAAAGCCCCAGATTATTATGATCAAATCGAAAAGGTCAACGATCGTTTCGCTTGCCTAATTtgtcaaaaaacattttcgcTAAGAAAAGACTGCGGACGTCATATTGCTTCTATACATCTGCGCCAAAACATGTTTCCTTGTGAATTTTGTGGACAAAGCTTTAATCGTAAAGACAAAACACAACTTCACGTTAAGCGCATGCATTCAGACAAAGTAGTGTATCCTCCAAAACATAAAGAATGGTTATTTGGAGACCGTTTATACTGTAAACCTAAAGCTTGGCGTCTTGTAGAATGTAAATTGTGTTCTAAGGTGTTTGATAGTACCAAAACACTTCGCCTGCATTTAGAAAGCCATAGTGCCCCTGACAGCCTTCATAATTTAGAATTAAGCGATGAAGTAATTCAACATCTGTTTCCAAACATGATTgatttaaattgtgttaaagAATTTGTAATGAAAGATATTCGCGAAAAACGTTGGTTCAAATACTATACAGTACTAAATGAAAACTCTTATGAGATGTCTATTAGCGATACGGAAATAGAAGActtagaagaagaaaaattagcAGATCGTTCTGCCAAATATAAGTGCGATTTGTGTGCTAaagaattttgctttaaatatcaaGCTTTCTGTCATTTAAAAGATGCTCATGGAAATGATGAAATTCCTTTAAAATGTGGACTATGCAAATTAGAATTCATATCGattaaaatgtatgaaaaacatTCACAAACACACTGCCGCAATAAACATAAAGTTTTACTTTGTGCCCACTGTCCGGCTAAATTTGTTTGGCCTGCAAATATGAAAAATCATAACTGCGCCCCAAAAGTACTTGCAATTGCACCAGTAACAAATAAAGCACAATTTACGTGTAATATATGTGAACGTAAATTTGAAGTAaagacaaaatttgaaaaacatttattgaCACATAGCGATGGCCGGACGGtgtcagcaaaaaaaattattcgttgTGGTCTTTGCGCGCATTCCTTTGAAAAACTTCGGCAATTACGTCAACACATGCCCTTGCATGCGGATGGCAAAACTGGAATTGACTTTAAAGGCAGTATATATATAAAACGTTTTGAGCGTtccaaattatttgattatgcCCTACTGCAACAGGAGATACAAAACGCTTATAGTAAATCTCAAATTAGTCGCTTTTATAGAGCCATCGACAAGGACGGCAATGAATTAGATATATTAGATTCTGACAGTGATATGGAAGAGGAGGGAATCGTTAACGGttcagaagttttaaaaaatgaatataaatgtGAATTATGCACAGAAATATTTGACAAACGTAAACTTCTTTTAAATCACCAACACGAACGGCACAGTAATGTTCCGCTACCATATTCATGTAAGGACTGTACCCAACAGTACGTTAGTAATGATCTGTTACAGCAACATTTGACGAGAGATTGTTGGAATGAACATCGTCGAATAGCCCAACAATGTGATTATTGCAATGCTCGCTTTATATGGCAGAACAACCTATTGAAACACAAAGAAATTCAGcATAAGAATCGAAAACAACCTAGGCCTCAGAGGGCCAGTACGCTCAAGTGTGAATACTGTGAAAAAGTGTTTATATGGCCGAAAGATTTAGTTCGTCacaaaaaaactcacaccgaaGGCAAAAAATTTACTTGCCCACACTGTGATCGCAAATTTCAACGCAAGGACAATTTATTAGCTCATATACGTATACATTGTCCTGACGGTATCTCCACATTTTCTAGTCCTAATAAAAATATCGATTACATACTGCCGCATTTACTAAAACCACATGGTTGCAAACGCATTAAGTGCATGGTTTGCTTTTCCGAACACAATCGTATACGCGACTTAAGGTCCCACCTACGCACACATCGTTATGCAGTTAATTtcgataaaagaaaagaaattgaaaCAATTGATGCGATATCATCACAACTCTATCCCGATGAAGTGGTAGCTCTAACAGAGGAGGAGTTAGCAAAACGAATTGGTGTTGATATTGCTGCGGAAAACAGCTTAGAACGATTTTATTCCATAACAAGTGAACACGGCTACGAAATTAATTTAGATAGTTCTGAAACAGAAAGCGACTCTGATGATAATGAAAACGAAAGCGACGAAGAGGATGTGTGCGATGTTAAACCAAAACGTGTATATACATGTGATTTATGCCCTCAATTAAGTTTTAAAcgtaaatatgaaatttttaatcatcAGCACAAACAACATAAGTGGGAGGAAGCCcgtcatatatgtatacattgtAATGGACGTTTTCTTTCCTCTTACATGTTGCAACGACACTATAAGCATCAatgtaaaaatcaaaagaaacgaCACTTTTGCCGTCGTTGTCCATTGCGTTTTATGTGGAAAAACAACATGAAGGCTCATATCATAATGGAGCATGGCCAAGAGATTGATTTAAGTCGTCACCATAAATGCTTTTTATGCCCAGAAAAATTCTCTACTCAAAAAGAGCTCAAACGTCACCTAAAAACGCAACATTCTTCACTTCAATATTGTCTTCTGTGTCCAAAAACCTTTTTCAGCGTTGATCATCTAATCGAACATTTAAGTCGTCATCGTTTAACTTCAGCTGACGTAAAAGCCGTTGAAACTATAATTTATTCAACATGTTGGCCAAATGGTGAAAAAAccattaaatgtaaattatgCGGCCAAAGTTTTAGTTCTTTGGGCAATTTGAGGCTAcactttttggataaaaatcCCCAAAATATGTGTGCCGGTCAGCATGCGTTTGGATGTTACTCCATAACTAATCAAAAAGGATTTGAACTACATTTAGATTTGGATTCGGAAACGGAGTTAGAAGATGAAGTGGAAAAAGGAAATACCAGAGACAATAAAAAGGTTTCTTATCCTTATAATTGTTGCATGTGCAGCATGTCATTTAGGCGAAAATATCAAATAGCTCAACATCAACGTTCCATGCACAATTATGAAACGCTGGAGCTTAAATGTGAACGCTGCATATTTAGGACAGTCTCACAGAAAGTTCTAGATTATCACAGAGCCACGCAGtgttttaatgttgaaaaacaATACAAATGTGAACAATGCAATTTTAAGTTCATGTGGCAAGATAATCTTGAAAATCATACTGCCATGTTTCACTCGTCTAAAGATTCCACGAATTCAATGGTAGCACTTAAGTCTTTTGCTGAACCAATACCAACAAACAAGAAAAGCGATACCAATATTTTCGAATGTATGGACTGTCACCGACGCTACAACCGAAAGGATCGTTATAAAGCtcattttaaaagatttcacaGTGATTTAGAGTTGTCGTCATTTAGCATTACCAAGCCAAAAATTCGAAAACATTCGACCACACTCAAGGcggaaaagaaatttttatgcgCCTTTTGTGGTCtctctttttcaaataattccaATCTTACGGTGCACATGAGAAGACACACTGGTGAGAAACCTTTTAAATGTGACCTTTGTGAAATGGCATTTCCACGTTCATCTGATTTACAAGCTCACCGACGCGCACACACTGGCGAGCGACCCTTCAAATGCTCGTACTGCGAGAAATCTTTTTCGCgacaatacaaattaaatgttcaCAATCGCATACACACCGGGGAGCGACCATACCAGTGCACATTTTGTCACAAATCATTTGCTCAGTCGCATGATTTGACTCTACATTTGCGTCGTCATACAGGCGAAAGACCCTACACGTGTGACCTTTGCGATGAAGGCTTTATATGTGCAACATCTCTGAAACAGCATCGCACATTAAAAGGTCATCagaaagaaaatgattttaaaatgtgtcagcttgatataaaattttaa
- Protein Sequence
- MSSLLKNECLINGIEYKCRTCFDPGQTIFHLTDEASRTKTWTDLLKDIAQIQDNNEELLPKTICCTCSDKLKSSYAFILQIHEVNKKYNQLLTYCQDPLQEIDDFADCLKESAIDLPLEQFMPEIKLEEDLTTSSFNTELITNFTASKPKLRNSRYILEETLNKNPALALKQIKKHKSYSKRNQNCGNECDVDNDYKNEPSSTSSDESDYVPLKKLKREKGKTSQTVKQKKGRKAPDYYDQIEKVNDRFACLICQKTFSLRKDCGRHIASIHLRQNMFPCEFCGQSFNRKDKTQLHVKRMHSDKVVYPPKHKEWLFGDRLYCKPKAWRLVECKLCSKVFDSTKTLRLHLESHSAPDSLHNLELSDEVIQHLFPNMIDLNCVKEFVMKDIREKRWFKYYTVLNENSYEMSISDTEIEDLEEEKLADRSAKYKCDLCAKEFCFKYQAFCHLKDAHGNDEIPLKCGLCKLEFISIKMYEKHSQTHCRNKHKVLLCAHCPAKFVWPANMKNHNCAPKVLAIAPVTNKAQFTCNICERKFEVKTKFEKHLLTHSDGRTVSAKKIIRCGLCAHSFEKLRQLRQHMPLHADGKTGIDFKGSIYIKRFERSKLFDYALLQQEIQNAYSKSQISRFYRAIDKDGNELDILDSDSDMEEEGIVNGSEVLKNEYKCELCTEIFDKRKLLLNHQHERHSNVPLPYSCKDCTQQYVSNDLLQQHLTRDCWNEHRRIAQQCDYCNARFIWQNNLLKHKEIQHKNRKQPRPQRASTLKCEYCEKVFIWPKDLVRHKKTHTEGKKFTCPHCDRKFQRKDNLLAHIRIHCPDGISTFSSPNKNIDYILPHLLKPHGCKRIKCMVCFSEHNRIRDLRSHLRTHRYAVNFDKRKEIETIDAISSQLYPDEVVALTEEELAKRIGVDIAAENSLERFYSITSEHGYEINLDSSETESDSDDNENESDEEDVCDVKPKRVYTCDLCPQLSFKRKYEIFNHQHKQHKWEEARHICIHCNGRFLSSYMLQRHYKHQCKNQKKRHFCRRCPLRFMWKNNMKAHIIMEHGQEIDLSRHHKCFLCPEKFSTQKELKRHLKTQHSSLQYCLLCPKTFFSVDHLIEHLSRHRLTSADVKAVETIIYSTCWPNGEKTIKCKLCGQSFSSLGNLRLHFLDKNPQNMCAGQHAFGCYSITNQKGFELHLDLDSETELEDEVEKGNTRDNKKVSYPYNCCMCSMSFRRKYQIAQHQRSMHNYETLELKCERCIFRTVSQKVLDYHRATQCFNVEKQYKCEQCNFKFMWQDNLENHTAMFHSSKDSTNSMVALKSFAEPIPTNKKSDTNIFECMDCHRRYNRKDRYKAHFKRFHSDLELSSFSITKPKIRKHSTTLKAEKKFLCAFCGLSFSNNSNLTVHMRRHTGEKPFKCDLCEMAFPRSSDLQAHRRAHTGERPFKCSYCEKSFSRQYKLNVHNRIHTGERPYQCTFCHKSFAQSHDLTLHLRRHTGERPYTCDLCDEGFICATSLKQHRTLKGHQKENDFKMCQLDIKF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01162409;
- 90% Identity
- -
- 80% Identity
- -