Mror020769.2
Basic Information
- Insect
- Melanophora roralis
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963583895.1
- Location
- OY757190.1:7534966-7549744[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2 3.7e+04 -6.2 5.8 235 235 95 95 9 182 0.57 2 4 0.071 1.3e+03 -0.6 0.5 171 211 240 280 214 292 0.76 3 4 3.7e-116 6.9e-112 374.6 26.1 1 299 326 622 326 623 0.93 4 4 0.14 2.5e+03 -1.5 3.7 220 245 651 676 626 697 0.47
Sequence Information
- Coding Sequence
- ATGGATACATCAAGTGCCGTAGGACGGCGTCGTATAAATTCTCGCGTTAACGCCGAGGATCAAGCTTTGGATCAAATAGCAAAAGAGAACGGTAAGAGCAAAGatacaaataaaccaaaaaccgATAACATCATCAATACTAATGGCActagtagttgtagtagtagcaataacaacaactatACTGAAGTGGCAAGCGATGAAATCATCcaggaaatttttgattttagcgATACTGATTTAAAAGAACTCGACATGAACGATGATACAACTAATAAAGAACTTCTTAAGGCAGCCGATAAAGTTGACAAAGAATTAAATgtagaaaatatgcaaaatttcataattagcgataataacaataataaacataatGATAATGAAAAAGTGAGAGACGATTAtgaaaaagagaaacaaaatcaGTTGGGGGGTAAGTCAACATCAACGTTGgaaattgataattttgataaacaaaacaaaaccaaagAGGAACCACcaaaagataataaattacTAACAGAAACGTTGACGGATCTTAAGTTTGCAAATGTTTTAAACGAAATAGAAGgaaatattaaagataataaTGGATTTGATAAAAAACATCCACAACTAACAGAGCCACCACTTACAGAAGAAACAAAGGGAATTTGCATAAAAGCAAATAATGAGTCTAAATTGTTGctgcaaaaagataaaaaaattcttgtgcaAATCGCCAATGATTCTATTGTTAACCAACATTCTACACAGATAACAAGCGACAACAACACTGACAAACAAATAGCAACATCTTCAGACGACATCAAGTCTAAGcaaataaatgataataatgCCACTCcagatttatctttaaataaatataaagaaagtaGTTATTATGAGAAAAATGATGATGATCATAACGACGATGATGAGTGTGTCGAACCATATGATGAACTATTAGTTCAATTCCTTGATGAAGCCAATCAGATTGCTGAGGCTAGACTAGCTGCCAGAAGGCATGCCCGGGCGGAAGCTCGAGAAATACGTATGAGAGAATTAGAACGGCAGCAAAAGGAACAAGAATCTAATGCAGATCGTGTATTCGATATGCATTCAAATGTTACAGGTATAACACCACTGTCACACATGCGTTTAGGCATAGGAAGTTCACCTGTGACTGGCTTACTTAACTCTGCACGAGGCAATTCTATGTCATCGCGTCGAAGTAGCGAAGATTCGCTGGAGGAGGAAGGTCGAAGCCTAAGAGATATACGTCATGaattaaagGATGTAGAAGAACGGTTTCGCAAGGCTATGATAGCGAATGCCCAATTAGATAACGATCGTGCCTCACAAACGTATCAAATACAGTTGTTAAAAGACAAACTGGAAGATATGGAAGAATCATATTCACAATTACAGCGAGAATGTAAAGAAAAGACACGCGATTGTAATGCCCTAAAACGATCGTTGGACAAATTAAGCGAAGAACTTAAACTGGTACAGGGTCAGCTGCATGAGCGTGACACACTGATATCAGAACAGGGTTTGGTTATTGTGGCAATTGAAAATGAGGATGGCACTGATGCCAAACGTGCTCTAGTCAGTGTTGAAAATGCACAATTATTGGGTTCTGTACAAGGATCATTAgATGtacgacttaaaaaatttagcgaAGAAAAACAGCAACTGCAGGCAGAAGTCCAGCATTTGCAAGATCAATTAGAAACGTATAAAAGTCAGGGCAAGGGGCGAGTTAAAGGCAATTCTTCAAATGGTCCTTTAGGCTCCGATGATGATGATTATGAAGCtcaaagagaagcaaacaaaatcaTCTCggattataaatataaattacaaaaagctGAACAGGAAATTGCTAGTCTACAATCAAGTTTAGCACGCTCTGAAACACAAGTTATACGCTATAAAAGTACCGCAGAAGCAGCTGAAAAAGCTGAAGCCGAACTTAAAATCGAACGAAGGAAACTGCAAAGAGAGaatCGCGAGGCAATGGAAAAACTAGAAGAACTAGAAACCTCAAATAATCATCTGCTTAAACGTTTGGACAAATTGAAGAATGCCAAAAGTGCTTTGCTTAAGGATCTCTGA
- Protein Sequence
- MDTSSAVGRRRINSRVNAEDQALDQIAKENGKSKDTNKPKTDNIINTNGTSSCSSSNNNNYTEVASDEIIQEIFDFSDTDLKELDMNDDTTNKELLKAADKVDKELNVENMQNFIISDNNNNKHNDNEKVRDDYEKEKQNQLGGKSTSTLEIDNFDKQNKTKEEPPKDNKLLTETLTDLKFANVLNEIEGNIKDNNGFDKKHPQLTEPPLTEETKGICIKANNESKLLLQKDKKILVQIANDSIVNQHSTQITSDNNTDKQIATSSDDIKSKQINDNNATPDLSLNKYKESSYYEKNDDDHNDDDECVEPYDELLVQFLDEANQIAEARLAARRHARAEAREIRMRELERQQKEQESNADRVFDMHSNVTGITPLSHMRLGIGSSPVTGLLNSARGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNDRASQTYQIQLLKDKLEDMEESYSQLQRECKEKTRDCNALKRSLDKLSEELKLVQGQLHERDTLISEQGLVIVAIENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFSEEKQQLQAEVQHLQDQLETYKSQGKGRVKGNSSNGPLGSDDDDYEAQREANKIISDYKYKLQKAEQEIASLQSSLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMEKLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -