Mqua055839.1
Basic Information
- Insect
- Melangyna quadrimaculata
- Gene Symbol
- Aef1
- Assembly
- GCA_949320155.1
- Location
- OX439484.1:204877260-204877904[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.00058 9.5 8.5 0.5 17 48 83 113 72 117 0.78 2 4 2.1e-05 0.35 13.1 0.0 21 52 114 145 111 146 0.88 3 4 0.0041 66 5.8 0.0 21 51 142 172 140 173 0.87 4 4 0.00016 2.6 10.3 0.1 21 47 170 196 168 201 0.89
Sequence Information
- Coding Sequence
- ATGACTAATTGTGAAATTGTAATCGTTGCGACAACTGATGAACCAGCGACGGACATACAACTCCCCTTCAACGTGATAACCTCAGCGGCAACAGTTTCAGCAGCTGGTGTCACCACTACGACTCATCACCTCGCGCCACTGCAACAAAGCTCGGAACAGCAAGTCCTGCAGCTGCAAACCGAAGACAGCCAGCATCAAGTGCTAACGGCGGCGGGAACATTGCCGCCGCAATTGGATCGTTATCCAGCCAACAGTCAGGAGAAGCCATTCCAATGCAGCATTTGTGAGCGACGGTTTCGACAGCTAAGCACACTTACAAATCACGTTAAAATCCACACCGGCGagaaaccctacaaatgcacgATATGCGACAAAACCTTTCGACAATCGAGCACCCTCACGAATCACATGAAAATCCACACCGGCGAGAAACCCTTCATTTGTTCGTTCTGCCCCAAGCAATTCCGCCAGCTGAGCACGCTTACAAATCACCTCAAAATTCACACCGGCGAGAAACCATTCGAATGTGCCGTCTGCAAAAAACAATTCCGCCAATCGAGTACGCTAAACAATCACATAAAGATTCATGTCATGGACAAGGTGTATATACCCGTCAAGATCAAAACcgaagaagaagaaggatgA
- Protein Sequence
- MTNCEIVIVATTDEPATDIQLPFNVITSAATVSAAGVTTTTHHLAPLQQSSEQQVLQLQTEDSQHQVLTAAGTLPPQLDRYPANSQEKPFQCSICERRFRQLSTLTNHVKIHTGEKPYKCTICDKTFRQSSTLTNHMKIHTGEKPFICSFCPKQFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYIPVKIKTEEEEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223723;
- 90% Identity
- iTF_00335361;
- 80% Identity
- iTF_00975042;