Mqua056479.1
Basic Information
- Insect
- Melangyna quadrimaculata
- Gene Symbol
- -
- Assembly
- GCA_949320155.1
- Location
- OX439485.1:3830427-3833556[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.67 1.1e+04 -1.3 0.0 26 48 248 271 239 273 0.80 2 4 3e-05 0.49 12.7 0.0 24 52 383 411 374 415 0.86 3 4 0.001 16 7.8 0.0 22 51 455 484 450 486 0.90 4 4 0.00025 4.1 9.7 0.0 18 45 537 564 529 569 0.91
Sequence Information
- Coding Sequence
- ATGGGCGATGCAGAATATACCTGCCGGACATGTGGCAAAAATTCCGAACAGGAAGACAACACCGATCTGTTCCCTTTGTATACATCTACCGAATATCATAATGAGCTGAAAATGATTCTATCAGAATTCGAAATTTGGAATTTAAATATTTCAGAAAACGATGGCTTACCCCAAAAAATATGCCTTACATGTTTCGATAGTTTTTGTCAAATACACAACTTCCGCGTTATGTGCGAAGAAGCACAAATGAACTTCAGTGAGTTATGTACTGGCTTggatataataattaaaatggaACCAGAATTCAATAGTGATATTGATGGCGATTTTCCAGAGGACTTTGAAGGAGAACAAACTATAACCATACAAGAACACTATCAATTTCCTCGTGATGCACGTTCGAAGGTATCACAAGCCCTTGCTGATTCGAAACCAAAAATTGAACACTTAGAAAAAACGAAATCCGAAAACAAAGATGGTGAAAGCAAAGATATAAACGATAAAGAAAAGGCACGACAAGAAGAGATTGATGAAATGAATTCAGAAGTTCCTGAATTCAAACCACATCGATGTGAATTTTGCATGGATATAGTGAGTTTTGATGATCCTGACCTCTTAAATGACCATTACAACGTCTTACACAGCACCGATTTACCATACTTGTGCCCCAAATGTGATAAATGCTTTGAAAGCAAAGTAAAGCGAAATATTCACGCTAAATCGCATTATCGAATCTTGGTTGAGTGTGATATTTGCGGCAAGAAAGTAAGAGGTGGTAAGCCAATGATGGCTCAGCACAATGAGTTGCATCACATTGAGATTGACCGCGAATGCCTTACATGTGGTAAGATATTTCCGAAAGCTACATTGAAAACATTCAACTATCACATGAGTTGGCATGATGATGCCAAATTGCACAAATGCAAGTATTGTGAAAAGAAATTCATCCAAATAACACATTTAGTGGTGCATGAGAAATCACATACGGGAGCTTGCGTCTATCAGTGCTATGAGTGTGGAATTGgatttggGAATGAAACTCTACTGGACgaacacaacaaaaaacaagGACACAAAAACTTGGATAATCTAGACGAAGCTATGGAACCAATGGATATAGTAGAAAAAACTAACTCGTATAAAAAATCAACGCGTTGCGAGATTTGTGACAAATCATTTCGATCATCAATAAATCTACGTTTGCATAGTTACAAAAAACATGGAGCTAAACCTACACCAGGAGTCGAAGAAATAATAAAGCAGAAACAGGTCGCGATCATTAAGCCATTTAAATGCAGCAAATGTACAGAATCGTTTTTGATGCACACGCAGCTGGTGCTGCACTTGAAAACACACGATGAGAACAAGCCTTATAAATGCCCTACATGCtcgaaaagtttcaaaaaggatAAATATTTAAGAAGTCATGTAGACACGGTGcacttaaagaaaaaagaacatGTTTGCACAACTTGCGGCTCGGCGTTTGTATATAAGCAAAGTCTCGAGGAACACGTTGCTGCCAAGCACAGTAACACGAAAGACTTCAAATGCGACGTTTGTGAAAAAGCATTTGCATTTGAGAAAGCATTGAAGAATCACATGCTTAGACATAAAGAAGAAAAGCCATTCGCGTGTACGGTTTGCAGCAAAAAATTTCGACAATCAACTGTTCTTAAAGCGCACGTAAAGTCACATCAAAAGAAACAAATCAAAGTCTCTTCAAACCATGGTCTTGACCCAAGTGACGAATTTAAAATAGAAGAGATGGAGTAG
- Protein Sequence
- MGDAEYTCRTCGKNSEQEDNTDLFPLYTSTEYHNELKMILSEFEIWNLNISENDGLPQKICLTCFDSFCQIHNFRVMCEEAQMNFSELCTGLDIIIKMEPEFNSDIDGDFPEDFEGEQTITIQEHYQFPRDARSKVSQALADSKPKIEHLEKTKSENKDGESKDINDKEKARQEEIDEMNSEVPEFKPHRCEFCMDIVSFDDPDLLNDHYNVLHSTDLPYLCPKCDKCFESKVKRNIHAKSHYRILVECDICGKKVRGGKPMMAQHNELHHIEIDRECLTCGKIFPKATLKTFNYHMSWHDDAKLHKCKYCEKKFIQITHLVVHEKSHTGACVYQCYECGIGFGNETLLDEHNKKQGHKNLDNLDEAMEPMDIVEKTNSYKKSTRCEICDKSFRSSINLRLHSYKKHGAKPTPGVEEIIKQKQVAIIKPFKCSKCTESFLMHTQLVLHLKTHDENKPYKCPTCSKSFKKDKYLRSHVDTVHLKKKEHVCTTCGSAFVYKQSLEEHVAAKHSNTKDFKCDVCEKAFAFEKALKNHMLRHKEEKPFACTVCSKKFRQSTVLKAHVKSHQKKQIKVSSNHGLDPSDEFKIEEME
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00694107;
- 90% Identity
- iTF_00975056;
- 80% Identity
- iTF_00975056;