Mqua036707.1
Basic Information
- Insect
- Melangyna quadrimaculata
- Gene Symbol
- -
- Assembly
- GCA_949320155.1
- Location
- OX439483.1:407074073-407084928[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.022 2.9e+02 3.3 0.0 27 43 128 144 121 148 0.80 2 16 0.022 2.9e+02 3.3 0.0 27 43 190 206 183 210 0.80 3 16 0.022 2.9e+02 3.3 0.0 27 43 252 268 245 272 0.80 4 16 0.035 4.8e+02 2.6 0.0 27 42 314 329 307 331 0.81 5 16 0.022 2.9e+02 3.3 0.0 27 43 376 392 369 396 0.80 6 16 0.022 2.9e+02 3.3 0.0 27 43 438 454 431 458 0.80 7 16 0.035 4.8e+02 2.6 0.0 27 42 500 515 493 517 0.81 8 16 0.022 2.9e+02 3.3 0.0 27 43 562 578 555 582 0.80 9 16 0.022 2.9e+02 3.3 0.0 27 43 624 640 617 644 0.80 10 16 0.022 2.9e+02 3.3 0.0 27 43 686 702 679 706 0.80 11 16 0.026 3.5e+02 3.0 0.0 27 43 748 764 741 767 0.81 12 16 0.035 4.8e+02 2.6 0.0 27 42 810 825 803 827 0.81 13 16 0.022 2.9e+02 3.3 0.0 27 43 872 888 865 892 0.80 14 16 0.022 2.9e+02 3.3 0.0 27 43 934 950 927 954 0.80 15 16 0.022 2.9e+02 3.3 0.0 27 43 996 1012 989 1016 0.80 16 16 0.022 2.9e+02 3.3 0.0 27 43 1058 1074 1051 1078 0.80
Sequence Information
- Coding Sequence
- atgtatgtatgtgaaGAAACCACAGTACAACAACTTGCACCATCACAAGCCCAACAACAATCTGTTGCAACACAAACTGGAGGACAAGAATTTTATGATCGCTTAAAGATAATTTTTGGAGGCGTTGGATCATTAAACTCCGAACGGCAAACACAAACACAAGCACAACAACAACCTCAACAAGTCCCTGCAATACCATCTGAAACATCAAGCATGCCAAATAGTGCCCCTACCGGAAAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACTACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACTACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCTTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTTTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACTACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCGTCACCGCTCTAGaTGATGTAGAAGAACCTGTAGAACCAACTGCACCACAAGCACCTACATCTGGATCTAGAACAAACGTGTTATATAGTGCCCCTACCGGGCAAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCCTCATCGCTCTAGATGCTGGACAACATCCTGTAGAACCAAATACACCACAAACATCTTCACCTGGATCTGGACCAATTGTGTCAAATAGTCCCCTCATCGCTCTAGtTGGACAAAACAATGGACAACAACCTCTACTATCACCTGCCCAACAACAATCTGGTGGAAATCAAACTGGTGGACAATTAATTAAATGCCAAGAATCATCTAGTTCCGTAGGCTCACTGGCTTACATAATCCAAATTGAGGACCAATTACCAACCCAATATATACAGCCAGAAATTAATAGTCCGGTATGTAGCAGGGTCGTGGAGTGCTTGAATACGTGCATGATCCCGTAA
- Protein Sequence
- MYVCEETTVQQLAPSQAQQQSVATQTGGQEFYDRLKIIFGGVGSLNSERQTQTQAQQQPQQVPAIPSETSSMPNSAPTGKDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGLHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGLHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHLVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGLHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPVTALDDVEEPVEPTAPQAPTSGSRTNVLYSAPTGQDAGQHPVEPNTPQTSSPGSGPIVSNSPLIALDAGQHPVEPNTPQTSSPGSGPIVSNSPLIALVGQNNGQQPLLSPAQQQSGGNQTGGQLIKCQESSSSVGSLAYIIQIEDQLPTQYIQPEINSPVCSRVVECLNTCMIP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -