Mqua054714.1
Basic Information
- Insect
- Melangyna quadrimaculata
- Gene Symbol
- -
- Assembly
- GCA_949320155.1
- Location
- OX439484.1:182181541-182183083[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.3e-10 1.9e-07 32.8 0.0 3 43 295 335 293 337 0.90 2 3 0.036 55 5.7 0.0 27 37 366 376 360 381 0.86 3 3 1.2e-15 1.8e-12 48.9 0.0 2 41 403 442 402 446 0.91
Sequence Information
- Coding Sequence
- ATGAATCACCTTAAATGGATGGGACACACAGCAACCATCCTCGACATACAAAAGGCACTCAAAAACGATCCAGCAACATGTGACATTACACTTACTTGCCGTGGCAAATCGGTGAAGGCTAATCGCTTTGTATTATGCTCATGCAGTGATCTATTGCGTGACATTCTAAATGATGTGCCTGTTGGTCAAGAAGCCACCATAATAGTACCCGATATCAAAGGTGCACTGCTCGACAGTGTATTAAGTTTTGTTTATATGGGCGAGACGAGTCTTTCATCGACAAATCTATCTGACTTTCTCGAGGCAATTAATGTTCTGGGAATCAAGAGTGCTATTAGCTTTGAATGTGCAACCAATTATACTGCTAACAACATCAAGAATGATACAGAAATTACCGAGATGGAAGAGGAACTTATGGGAGCTGAACCAGAGCAAGAAATAGTTGAAGAAAAAGATGAAGAAGAGGATCAGCAAGCATGTACAGCTGATACAAGCGTACGAGAACTAGAATTCCTTGAGGTGTACAATGAACAAGACAAGATTAGCTATACCATCGAAAATATCGCCCCAAATAATCCAAACGAATACATTTTAACTGAAAGTTCAGGCACTTTTACACTGACACCGAATATGAAAATAGATTCGAGCGAAGTGGGTTCATTGGTTGAAAAGACCGACGAAGAAACCCATTTGATGGAACAATATGTAAATGATCCGATAGGTGATAATAGTCATTGTTCAAGCACAGACCAAAAAGATACCAaggcaaataagaaattaaaagatGAATTCAGTGAATTTCAGGGACTTAGTCCAGAGGAACGTAAAGAAATATCAAGAGCCAGCTTACAAAACTTCAACGAAACCCAATCGGCACGAGTGGAAGCACTAGAAAATGCAGTCTTAGCTGTTGTAGATGAGGGCAAGAGTTTACAGAAAGCCGCCATAATGTTTAACATATCAAAAACGGTCCTATGGAGAAGAGTGAAAAAACATCCGCTCTATATGAAAACGACTCGCGAGAATCCACTAATAACGGCAGCATGTGAACGTCTCAAGACTGGCGACTCACTTAAAAGTATCAGTCAAGCGCTCGATATACCGATGTCGACTCTACATCGACATAAGGTCAGACTGTCACAGGAAGGCAGGCTTCCCGACTATGTCACTTTCAAGAAGCGAGGCCCATTGTCAAAAGAAGTACTACGAGCGAAACTCAACAAGGCAGTGAGTGCATGTTTGGGAAATGGAATGTCACAGAATCATGCGGCGAATGTTTTCAATGTTCCAAAAAGCACCCTTTGGAGAcatttacagaaaaaaatgtgTAGCTCGACAGATGATCCGAATAGTGTAAGCATTAAAGAGGAAGTTATTTCGCcagaaaattga
- Protein Sequence
- MNHLKWMGHTATILDIQKALKNDPATCDITLTCRGKSVKANRFVLCSCSDLLRDILNDVPVGQEATIIVPDIKGALLDSVLSFVYMGETSLSSTNLSDFLEAINVLGIKSAISFECATNYTANNIKNDTEITEMEEELMGAEPEQEIVEEKDEEEDQQACTADTSVRELEFLEVYNEQDKISYTIENIAPNNPNEYILTESSGTFTLTPNMKIDSSEVGSLVEKTDEETHLMEQYVNDPIGDNSHCSSTDQKDTKANKKLKDEFSEFQGLSPEERKEISRASLQNFNETQSARVEALENAVLAVVDEGKSLQKAAIMFNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKTGDSLKSISQALDIPMSTLHRHKVRLSQEGRLPDYVTFKKRGPLSKEVLRAKLNKAVSACLGNGMSQNHAANVFNVPKSTLWRHLQKKMCSSTDDPNSVSIKEEVISPEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_00665554;
- 80% Identity
- iTF_00974900;