Basic Information

Insect: Melanchra persicariae
Gene Symbol: -
Assembly: GCA_947386135.1
Location: OX376670.1:13622868-13624766[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.1e-05 0.0054 17.6 1.5 2 23 286 308 285 308 0.92

2 9 0.17 13 7.0 1.5 1 23 314 336 314 336 0.98

3 9 0.0025 0.19 12.7 0.1 1 21 370 390 370 391 0.94

4 9 0.00078 0.059 14.3 1.7 2 23 409 430 408 430 0.97

5 9 2.9e-05 0.0022 18.8 1.4 3 23 439 459 438 459 0.97

6 9 0.00065 0.05 14.5 2.7 1 23 465 487 465 487 0.96

7 9 1.2e-05 0.00089 20.0 5.5 1 23 493 515 493 515 0.98

8 9 5.7e-05 0.0043 17.9 1.0 2 23 522 543 521 543 0.96

9 9 9.1e-06 0.00069 20.4 1.8 1 23 549 572 549 572 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.1e-05	0.0054	17.6	1.5	2	23	286	308	285	308	0.92
2	9	0.17	13	7.0	1.5	1	23	314	336	314	336	0.98
3	9	0.0025	0.19	12.7	0.1	1	21	370	390	370	391	0.94
4	9	0.00078	0.059	14.3	1.7	2	23	409	430	408	430	0.97
5	9	2.9e-05	0.0022	18.8	1.4	3	23	439	459	438	459	0.97
6	9	0.00065	0.05	14.5	2.7	1	23	465	487	465	487	0.96
7	9	1.2e-05	0.00089	20.0	5.5	1	23	493	515	493	515	0.98
8	9	5.7e-05	0.0043	17.9	1.0	2	23	522	543	521	543	0.96
9	9	9.1e-06	0.00069	20.4	1.8	1	23	549	572	549	572	0.98

Sequence Information

Coding Sequence: ATGAATGTCACGAAAAATGTACACTGCCGTCTTTGTGCAGAGGTAAAACCGAACAAAGATCTCGCAAACTTGCAGACTGATGAAGAAACGTGCCAGAAAGTCGTCAACAAACTATCAAGATTCAATATAATCATGGATTTTCAGCAGGATATATTACCGCAGACTGTTTGTTCACTATGTGTCAACTCCTTAGAACAAGCATTTTCTTTCGTAACTGCAGTAGAACAGGCACAGGCATTTCTTAATGACTTTATCCTGGTACAAGCAAGGGCTGATAAAAGTGATGGTTTTGGTGAATTTGCCTTTTTAGTACCTTCAGATGCTGATAAAGAGTTTATTGATATTAAAGTTGAGAGCAGGCGGGATCCAATGGATGTATGTGATAGTGATCCGAACTTAGATGAAGAATGTGTTGGTGTTGATGGAGACAGTGAAGAAGTTCATATAGAGACTGAGGACCCTACAAAATCTTATGTTTTTGTTGAAAAAAAGATTCATATAAAAAATGAAAGTGATAAATGCCCTGTAAATAATCTAAAAAAGAAATCTCTTAATTTAAGTAATGACTGTGTAGAGAATCAATACACTAATGCTATAGAAAATGATTTTAAGATCCAAGATTCAGACACTAAAAAATCTAAAGATACAGAATACAATTCTAAACCAAACCTGCAATTGGACAATACCAATGTGGAAGGTGACTTAAATAAAATAAATTATAGCACTGTGGCACCAATCCCATCGAAACTATTGGATACTGCAGAATATTCCGAAGATTACATAACTAAACAAATAAACAGATTAAGCACTGTACCCGTGCAATGCCTAAAAATGACATGGATGGATTACGAATGGAAGTGCTCACACTGCGGCACTTTTTTCTCAAATATTGACGAACTACAGAGGCATTCAATGCTGTACCACAATGCCTGTAATGCGTACCAATGTACCGATTGTAAAATAAAAAAGCAACGACTCAATGCTTTCATCAAACACGTCAGATCTCACAGGAAATACTTACATTATTCATGCTACAAATGCTTTGAAAAGTTCCCTAAAATTATGGAAACAAGACACCATAAGACAAAAATGCACGAGAACTCCAAATACGTTTGCTTGGGATGCAATACTACTTTTGCTAGTAAGACTGAAATGGAGGAACATGTCAACAAGTACTACAACATTCTATGGAGACAGAAAACATTTATAAGTAGTGACAATTTAACATGCAGTACGTGCAATAAGGTTTGTGCAAGTGTTACCGCTTTACGGAACCACCTAAATAGGCACAAAGAAAAGAAAAGAGACCGCATATGTGACCGGTGTGGAAAATGTTTTGATAGCGAACCTAGTTTAAGAACTCACATGGATACTCATACCGAAAGAGTTTTATATCATTGTGAAATTTGTAAAACTACATTCAAAACTGTATACTCACTACGGTACCATGCTAGCATTCACTCTGGAATCAAACCGTTTACTTGTGACGTTTGTAACAAATGTTTTAGAACCAGAAGTCAGATTACAAATCACATGAAATTCCATACAGACTACTTTCCGCTTAGTTGCTCAGTTTGCAACAAAAAGTTCCGTATAGAGAACAACTTACAGAATCATATGCTACAGCATACCGGAGAGAAACCGTTTTCCTGTGACATTTGTCCGAGAGACTTTACTAACATGTCCAACCGTAACAAGCATATGAGACGGAGACATGGTATCGAGATGGCTAAGAGGAGACAGCCTATTATAAAGCAGCAAACAGCTGAAGACCATACTGCTTCTGCCCTGGTTACTGGAGAAACATCTGATCTGGACAAAATTAATGAATGGAAGAACAAAAATAGAGGACAGCCAAAATGTCAAAGAGCACATAATAAGGTTAATAAAAAAGAGTGA
Protein Sequence: MNVTKNVHCRLCAEVKPNKDLANLQTDEETCQKVVNKLSRFNIIMDFQQDILPQTVCSLCVNSLEQAFSFVTAVEQAQAFLNDFILVQARADKSDGFGEFAFLVPSDADKEFIDIKVESRRDPMDVCDSDPNLDEECVGVDGDSEEVHIETEDPTKSYVFVEKKIHIKNESDKCPVNNLKKKSLNLSNDCVENQYTNAIENDFKIQDSDTKKSKDTEYNSKPNLQLDNTNVEGDLNKINYSTVAPIPSKLLDTAEYSEDYITKQINRLSTVPVQCLKMTWMDYEWKCSHCGTFFSNIDELQRHSMLYHNACNAYQCTDCKIKKQRLNAFIKHVRSHRKYLHYSCYKCFEKFPKIMETRHHKTKMHENSKYVCLGCNTTFASKTEMEEHVNKYYNILWRQKTFISSDNLTCSTCNKVCASVTALRNHLNRHKEKKRDRICDRCGKCFDSEPSLRTHMDTHTERVLYHCEICKTTFKTVYSLRYHASIHSGIKPFTCDVCNKCFRTRSQITNHMKFHTDYFPLSCSVCNKKFRIENNLQNHMLQHTGEKPFSCDICPRDFTNMSNRNKHMRRRHGIEMAKRRQPIIKQQTAEDHTASALVTGETSDLDKINEWKNKNRGQPKCQRAHNKVNKKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00300574; iTF_00852103; iTF_00772333; iTF_00952123; iTF_00851101;
90% Identity: -
80% Identity: -