Lwla026823.1
Basic Information
- Insect
- Lacanobia wlatinum
- Gene Symbol
- -
- Assembly
- GCA_947578705.1
- Location
- OX388048.1:3211549-3213504[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.00016 0.014 16.4 1.6 2 23 306 328 305 328 0.92 2 9 0.18 15 6.9 1.5 1 23 334 356 334 356 0.98 3 9 0.013 1.2 10.4 0.0 1 21 390 410 390 411 0.94 4 9 0.00068 0.059 14.5 2.7 2 23 429 450 428 450 0.97 5 9 3.1e-05 0.0027 18.7 1.4 3 23 459 479 458 479 0.97 6 9 7.1e-05 0.0062 17.6 1.2 1 23 485 507 485 507 0.97 7 9 1.2e-05 0.0011 20.0 5.5 1 23 513 535 513 535 0.98 8 9 6e-05 0.0053 17.8 0.6 3 23 543 563 541 563 0.96 9 9 9.6e-06 0.00084 20.3 1.8 1 23 569 592 569 592 0.98
Sequence Information
- Coding Sequence
- ATGAATAACACGAAAAATTTATACTGTCGACTTTGCGCAGAGTTAAAACCGCAAATGGAACTCGCAAACCTGCAGACTGATGAAGAAACATGCCAGAAAGTCGTCAATAAACTATCAAGATTCAATATAATCATGGATTTTCAGCATGATATGTTACCGAAGAATGTTTGTTCACTATGCGTCAACTCCTTAGAACAAGCGTTTGCTTTCGTAACTGCAGTAGAACAGGCGCAGACATTTCTTAATGACTTTATTCTGGTACAAACAAGGACTGGAAAAACTGATGCTTATGGTGAATTCGCGTTTTATGTACCTTCTGATTCTGGTACAGATATGATTGATATTAAAGTCGAGAGTAGAACAGATCCAATGGATGTAAATTATGGTGATCTGAACTTAGATGAAGAAGAATGTGATGGAATTGATGGAGACAGTGAAGAAGTTCGTATAGAGACTGAGGACCCTACAAAATTATATGTTTTTGTTGATGAAAAAATAAATATCAAAGATGAAAGCGATAAATGCTCTGTAAATCTTAAAGATAAATCTCTTAATTTTAGTGATGACTGTTTAGATAATCAATACACCAATACTATAGAAAATGATTTTAAGATCCAAGATTCAAATACAAAAAAATCTAAACTGAAAGAAAAATTTATGAAAGATATGGAACACAATTCTAAACCAAACCTGCGGGATGTTACAGTTTATCCCACAGATGACTTAAATAAAATAAATTATAATATTGTGGATGAAAGCGTACTGCATAAACATACGGAATCCATTACTAAACCAATCCCACCAAAACTAGAGGGTACTACAGAGTATTCTGAAGATTACATTAATAAACAAATAAACAGATTAAGTACTGTACCCGTGCAATGCCTAAAAATGACATGGATGGATTACGAATGGAAATGCTCTCACTGCGGCACATTTTTCTCAAATATTGAAGAGCTACAGAAACATTCAATGCTGTACCACAACACCTGTAACGCTTACCAATGCACTGATTGTAAAATAAAAAAGCAACGTCTTAATGCTTTCATAAAACACGTCAGATCTCACAGAAAATACTTACATTATTCATGCTACAAATGCTTTGAGAAGTTCCCTAAAATAATGGAAACGAGACATCATAAAACAAAATTGCATGAGGACTCCAAATACGTTTGCCTGGGATGCAACATTCCTTTTGCTAGTAAGACTGAAATGGAGGAACACGTCAACAAGTATTATAATATTCTATGGAGACAGAAAACGTTTATCAATAGTGATAATTTAACATGCAGCACGTGTAATAAAGTTTGTACAAGCATTACCGCTTTACGTAACCATTTGAACAAGCACAAAGAAAAGAAAAGAGACCGCATATGTGACCGATGTGGTAAATGTTTCGATAGCGAACCTAGCTTAAGAACTCATATGGACACACATACTGAAAGGGTTTTATATCAATGTGAAATATGTAAAACTACGTTCAAAACCATTTACTCTCTACGGTACCACGCTAGTATCCACTCAGGAATCAAACCATTTACTTGTGACGTTTGTAACAAATGTTTTAGAACAAGAAGTCAGATTACAAATCACATGAAATTCCATACTGACTACTTTCCTCTGGCTTGCTCAGTTTGCAACAAAAAGTTTCGTATAGAGACCAACTTACAGAATCATATGCTGCAGCATACTGGGGAGAAACCGTTTTCCTGTGACATTTGTCCGAGAGACTTTACCAACATGTCCAACCGTAACAAACACATGAGACGGAGACATGGTATTGAGATGGCTAAGAAGAGACAGCCTATTATAAAACAGCAGACGGCTGATGACCCAACTGTCTCCAAGCTGGTTCTTGGAGCTACATCTGATTTAGATAAAATAGATGAATGGAAGAACAAAATTAGGGGACAGCAAAAAAGTCAAAGGGCAAATAACAAGATTAAAAAGGATTAA
- Protein Sequence
- MNNTKNLYCRLCAELKPQMELANLQTDEETCQKVVNKLSRFNIIMDFQHDMLPKNVCSLCVNSLEQAFAFVTAVEQAQTFLNDFILVQTRTGKTDAYGEFAFYVPSDSGTDMIDIKVESRTDPMDVNYGDLNLDEEECDGIDGDSEEVRIETEDPTKLYVFVDEKINIKDESDKCSVNLKDKSLNFSDDCLDNQYTNTIENDFKIQDSNTKKSKLKEKFMKDMEHNSKPNLRDVTVYPTDDLNKINYNIVDESVLHKHTESITKPIPPKLEGTTEYSEDYINKQINRLSTVPVQCLKMTWMDYEWKCSHCGTFFSNIEELQKHSMLYHNTCNAYQCTDCKIKKQRLNAFIKHVRSHRKYLHYSCYKCFEKFPKIMETRHHKTKLHEDSKYVCLGCNIPFASKTEMEEHVNKYYNILWRQKTFINSDNLTCSTCNKVCTSITALRNHLNKHKEKKRDRICDRCGKCFDSEPSLRTHMDTHTERVLYQCEICKTTFKTIYSLRYHASIHSGIKPFTCDVCNKCFRTRSQITNHMKFHTDYFPLACSVCNKKFRIETNLQNHMLQHTGEKPFSCDICPRDFTNMSNRNKHMRRRHGIEMAKKRQPIIKQQTADDPTVSKLVLGATSDLDKIDEWKNKIRGQQKSQRANNKIKKD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00974064;
- 90% Identity
- iTF_00851101;
- 80% Identity
- -