Mper023044.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376673.1:8633125-8652100[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 22 0.043 3.3 8.8 0.1 3 23 251 272 250 272 0.93 2 22 0.85 64 4.7 0.0 2 23 298 320 297 320 0.91 3 22 0.00014 0.011 16.6 1.6 1 23 342 364 342 364 0.98 4 22 0.0061 0.47 11.5 0.5 1 23 368 391 368 391 0.98 5 22 0.026 1.9 9.5 0.6 2 22 397 417 396 417 0.95 6 22 0.22 17 6.6 3.0 1 23 424 447 424 447 0.96 7 22 0.74 56 4.9 0.2 3 23 480 501 478 501 0.85 8 22 7.5 5.7e+02 1.7 0.1 3 21 529 547 529 550 0.83 9 22 0.48 36 5.5 1.7 2 23 573 594 572 594 0.94 10 22 1.9e-06 0.00015 22.5 1.1 1 23 598 621 598 621 0.94 11 22 0.021 1.6 9.8 0.1 3 20 627 644 626 646 0.92 12 22 0.064 4.8 8.3 3.1 1 23 653 676 653 676 0.91 13 22 0.0023 0.18 12.8 3.3 1 20 684 703 684 706 0.94 14 22 3.9 2.9e+02 2.7 0.3 2 23 765 787 764 787 0.93 15 22 9.4 7.1e+02 1.4 2.1 3 23 813 834 808 834 0.84 16 22 7.4e-05 0.0056 17.5 0.7 1 23 882 905 882 905 0.96 17 22 0.076 5.8 8.0 0.5 3 20 912 929 911 931 0.93 18 22 1.6 1.2e+02 3.9 3.7 1 23 938 961 938 961 0.90 19 22 0.0019 0.14 13.1 1.3 1 23 968 991 968 991 0.96 20 22 0.0032 0.24 12.4 2.0 1 23 996 1018 996 1018 0.96 21 22 1.6e-05 0.0012 19.6 0.5 1 20 1024 1043 1024 1046 0.94 22 22 3.1e-05 0.0024 18.7 3.1 1 23 1052 1075 1052 1075 0.97
Sequence Information
- Coding Sequence
- ATGGATGCTAAAACTACGGAATGGCGAGCCGGCCCAAATGTTTGTCGGTGCTGCTTAACAGAAGGGTGCTACAAAGACATTTCCACGGAATATTTCTGGATGGGAAAGCGTGAGGTGTACGCTGAAATGCTTTCAGACACTCTCAGTCTCTCAATTGCATACTCCCAATCCGGCGGTCCCAACAGTAACAGTCGTCTAATATGTGAGCTGTGTATATCTCGGCTACGGGACGCCTCAGACTTCAAGCGGCAGGTGCTGGAGTGTGAGAAGACTTTCATGCAGCACTTGGACGCCAGCAGCTCTTCGATAGTGGATGTTGAAGTACAAGTGGAACGTACAGACTCGGACGTTAAAATGGAGCCAGTGAAACAAGAGAAGCGACTAAGCGACGAGGATGATGACTTTGATGACCGATGCGGCTTTGATGATGACGATGATGACCTTGACGACCAACCCCTAACGAAACTAGCAAGCAAAATACCCAAGAAGGAATCAGTAGACCTACTAGACCTCCTTGATAACACTAAGGCAACAGAGAAACGGAAGTCCTCCACGAAGACTAAGTCTGTACCAGCCAAAAAGACTAAGACTCTGAAGAAGGATACCGTTAAGGCAAGCGCTAGTAAAGTGGCCGCTAAAACTGAGAAGAAGAAAAAAGCGGAAAGTTATGACGCGACGCGCTCAAACGCCGAGACTATTATCAGTAGCACGACTGCTTATCCCTTCAGAGTGAATGATAAGTCGATACTCTGCGTCTACTGCCAAGAGTTGTACGAAGACCCTGACGAGTTCCGGAGACACATGGACGGAGAACATGACTATTTTAGCATCAAGGTTGCGTTCCATCACCTCCCTAAAACAGAATTCATCAAAGCTGACCTCACGAATTTGCGCTGTAGACTCTGCAACGTCGGTTTTCCGAACCTGGAAACGGTTTTGGCTCATTTAGAAGCTGAGCATGATAGAAAAATTGATCCGCACGGAAAATACGGCGTAATGCCTTACCTACTCCAGAAGGACGTTTATAACTGCGCAGTTTGCGAGAAAAACTTTCCTTCACTCTTTCACTTAAACAGACACACGATCACACATTTTCTAAGCTACGTATGCCATGTTTGTGGCAGTAGTTATGTGGCTACCACGGGCTTGCTTCGACACGTGCGATCCAAACACCAGATTTACGAGGTATCATGCAAGAGATGCAAAAAAGTCTTCCCTACAATGGAAGCCAAAGAAAAACATAGACGAACGCAGAAGTCCTGCATGCCGTATTGCTGTCCGAAATGCCAGGAACGCTTCCTCGATTATAAGACCAGGAAAAAGCATATGGAGGTTGCTCACGTGTTCGATTCGTTGTTCGAAGCGAGACAAAACGCTAAAGTCATTTTGAGGTACACTACGGCTTACCCATTCAAGATTCCCGGAAACGATATGGTGTGCGTTTACTGCTGCGACGCCTTTCCAGAACCAGAGGCGTATAGACAACACATGAGAACAGAGCACTACCAGCCAAACGTCAAACATGCGTTCGCGCACATCATGGGCACAGAGGAATACCTTAAAGTCGACTGTACAGACCTAGGATGCAAGCTATGCGCAAAGAAATTCGAATCCTTACCTGCCATAGCGGAACACCTCGTCTTGGAACACGACAAGCATTTAAACCTAAACGCAGAGATCGGATTACAGATTTTCAAATTAGGTGGCGAAAGATGGGTTTGCGCTACCTGCTTCCAGAAATTCCCCTCACTAAGATGCTTGTCTAGACATAATAGCGTGCACTATCATAAGTACACGTGTGAAACTTGTGGTAAATCTTATATCAGTCGAGAGAACTTAAAGAAGCACATTCTCTTCAACCATACCGGAGAAAAGATTTGTACTAAGTGTAAGAAGTCCTTCCCCAATCTTGAGGAGCGCCGTGCTCATGTGCTAGCAAGCAAACGATGCTGGCCTTATTGCTGCAACCTTTGTGGTCACAGATTCGTCACAAAAAAGCTTAGAATCGAACACTTAGCGGAAACCCACAACGTAGACACGAACAAGCTCTACACTTGCCCTGAATGTCAGGAATCTTTCACAGATTCAAGACTATACAGAACACATTTTATGTGTCATATTCTTATCAGAACCATCAACACCAAAGACAAAACAGAAGAGCAGTTGAATGACTGGGCATTTCTTTTTGTTCTAGAGAAGCAAAATGACCCCAATTTCATCTCGAAACGGAACGCCGAGATTATTGTGAAATATTCCACCGTTTACCCCTTCAAGCTGCCCGAAGACAATATGGTTTGTGTGTACTGTTGCGAAACCTATCCGGAACCAGATGTGTTCAGAACCCACATGAACGAAGAACATCAAACGTTTAACCCCAAAATGGCCTTTGTCCATTGTTCCGAAGGTTACATCAAAGTTGACTGCACTAATATCAATTGTAGGCTCTGCTTTAAACACTACCCGAATTTGGACAAGATAGCAGATCACTTGTACTCCGAACATAAGAAGCCCCTTGACTTGACTGTCGCGTTAGGGCTACAACCATTCAAGTTAGAGAACAATAAGCTGTTCTGCGCAATATGCCCCTATAAAGCAGTATGCTTACGACAGTTAAGCAGACACACGCAGAGCCATTTCTGGAGATACACCTGTGAAGCTTGCGGAAAATCCTACGCGACCAACACAGCTTTGCGCAGTCATACACGATTCTCGCACATCGGCACCGAAAAGATATGCCGCAAATGTAAACGGACTTTTTCTTCTATCGAAGAGAGGCGGAAACATTTGCTGGAATCCCAAAAATGCTGGTCATATTTATGCTGTGTCTGCGGAGCGAGATTCATTTCATGGCACGCCAAACAATTACATCTGACAGAGTGTCACGGTGTTGAAAAGAAGGCCTACGTGTGCCCAGAATGTGGACAAATCTTCCAAGAGCGAAAGAAGTTTAGGACGCATTTCAGGCTAACTCACACGGATGATAATTATGTGTGCTCTTGTTGTGGTATGAAATTTGTTACCAAAAAGAATTTAGAAGAACACAGAGTCTCCCACACGATGGAGAAACTCTTTCCTTGTACTGTTTGCTCCAAATCGTTTCCTAGAAAGAAGAATTTGTTACAGCACATGTGGATACATATGGAACATAAACGTTTTGAATGCAAGTTATGTAATAAGAAGTTCAATCAGAAAGTTAGTTGGAAAACACATATGAAATCTTATCATCCTGACTTAGAAGATTTTGAGGGGAAAAACGATAATATTAAGCTAATGTTTGATGTTTTGAACGAATAA
- Protein Sequence
- MDAKTTEWRAGPNVCRCCLTEGCYKDISTEYFWMGKREVYAEMLSDTLSLSIAYSQSGGPNSNSRLICELCISRLRDASDFKRQVLECEKTFMQHLDASSSSIVDVEVQVERTDSDVKMEPVKQEKRLSDEDDDFDDRCGFDDDDDDLDDQPLTKLASKIPKKESVDLLDLLDNTKATEKRKSSTKTKSVPAKKTKTLKKDTVKASASKVAAKTEKKKKAESYDATRSNAETIISSTTAYPFRVNDKSILCVYCQELYEDPDEFRRHMDGEHDYFSIKVAFHHLPKTEFIKADLTNLRCRLCNVGFPNLETVLAHLEAEHDRKIDPHGKYGVMPYLLQKDVYNCAVCEKNFPSLFHLNRHTITHFLSYVCHVCGSSYVATTGLLRHVRSKHQIYEVSCKRCKKVFPTMEAKEKHRRTQKSCMPYCCPKCQERFLDYKTRKKHMEVAHVFDSLFEARQNAKVILRYTTAYPFKIPGNDMVCVYCCDAFPEPEAYRQHMRTEHYQPNVKHAFAHIMGTEEYLKVDCTDLGCKLCAKKFESLPAIAEHLVLEHDKHLNLNAEIGLQIFKLGGERWVCATCFQKFPSLRCLSRHNSVHYHKYTCETCGKSYISRENLKKHILFNHTGEKICTKCKKSFPNLEERRAHVLASKRCWPYCCNLCGHRFVTKKLRIEHLAETHNVDTNKLYTCPECQESFTDSRLYRTHFMCHILIRTINTKDKTEEQLNDWAFLFVLEKQNDPNFISKRNAEIIVKYSTVYPFKLPEDNMVCVYCCETYPEPDVFRTHMNEEHQTFNPKMAFVHCSEGYIKVDCTNINCRLCFKHYPNLDKIADHLYSEHKKPLDLTVALGLQPFKLENNKLFCAICPYKAVCLRQLSRHTQSHFWRYTCEACGKSYATNTALRSHTRFSHIGTEKICRKCKRTFSSIEERRKHLLESQKCWSYLCCVCGARFISWHAKQLHLTECHGVEKKAYVCPECGQIFQERKKFRTHFRLTHTDDNYVCSCCGMKFVTKKNLEEHRVSHTMEKLFPCTVCSKSFPRKKNLLQHMWIHMEHKRFECKLCNKKFNQKVSWKTHMKSYHPDLEDFEGKNDNIKLMFDVLNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00685740;
- 90% Identity
- -
- 80% Identity
- -