Basic Information

Insect: Melanchra persicariae
Gene Symbol: -
Assembly: GCA_947386135.1
Location: OX376672.1:3346724-3368574[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0041 0.31 12.0 0.5 1 23 231 253 231 253 0.98

2 12 0.11 8.4 7.5 3.3 1 23 260 283 260 283 0.94

3 12 2.2 1.7e+02 3.4 1.0 1 23 287 309 287 309 0.76

4 12 0.00073 0.055 14.4 5.2 1 23 314 337 314 337 0.98

5 12 7.1e-05 0.0054 17.6 2.5 1 23 341 364 341 364 0.97

6 12 0.052 4 8.5 0.1 3 20 385 402 384 403 0.95

7 12 0.00071 0.054 14.4 0.1 2 23 417 438 416 438 0.97

8 12 3.9e-05 0.0029 18.4 1.5 1 23 457 480 457 480 0.98

9 12 6.1e-06 0.00046 20.9 1.9 2 23 490 511 489 511 0.97

10 12 3.2e-05 0.0024 18.6 3.0 1 23 517 539 517 539 0.99

11 12 1.2e-07 9.3e-06 26.3 1.5 1 23 545 567 545 567 0.98

12 12 3.2e-06 0.00024 21.8 2.2 1 23 573 596 573 596 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0041	0.31	12.0	0.5	1	23	231	253	231	253	0.98
2	12	0.11	8.4	7.5	3.3	1	23	260	283	260	283	0.94
3	12	2.2	1.7e+02	3.4	1.0	1	23	287	309	287	309	0.76
4	12	0.00073	0.055	14.4	5.2	1	23	314	337	314	337	0.98
5	12	7.1e-05	0.0054	17.6	2.5	1	23	341	364	341	364	0.97
6	12	0.052	4	8.5	0.1	3	20	385	402	384	403	0.95
7	12	0.00071	0.054	14.4	0.1	2	23	417	438	416	438	0.97
8	12	3.9e-05	0.0029	18.4	1.5	1	23	457	480	457	480	0.98
9	12	6.1e-06	0.00046	20.9	1.9	2	23	490	511	489	511	0.97
10	12	3.2e-05	0.0024	18.6	3.0	1	23	517	539	517	539	0.99
11	12	1.2e-07	9.3e-06	26.3	1.5	1	23	545	567	545	567	0.98
12	12	3.2e-06	0.00024	21.8	2.2	1	23	573	596	573	596	0.98

Sequence Information

Coding Sequence: ATGGAAAAACTTTCAATGTGTAGAATATGTTTAGTGGAGAATGTTCGCATGTATGTGGTTGCCGATAAAAACCTGGAGGAGATATATGAGAAACTGACTGATATTCCAtttgtaactgaagacagtagaccgatgcttgcttgttacttctgctacgctaaactgaagcaatgctgcagattcaagagaaaatgtctggaagctgaggagctgttcgctcagatgttgaatgaggattacgagATAAAACCACTACAAATAAAAGGTGAACCAGACTACCTTGGTGGGTTCATTAAAACGTCAATTCAACACATTAGTATAGTTGATGCTGGCCAAGCAGAAAGCGATGATGCCATCAAAGAAGAAATACCAGTCTGTGAGAGGCTGGTAGATGGTATTGAGCTGAAAGTGGAACATCACAGTGATGATAGAGAACCGGATAACGTAGACGGTATCTATCCAGAAGTAGATGATATACCAGCACACCACTCAGGCTCAGACTCCGAAGATGATGTGCCGTTGATGAAGTTCAAAACTGAACTGGGGGAAGAGCAAGAAGTCTCGAAAAAGAAGAAACAGATTAAAAGGAAGACTCGCAAGCCAGACTGTAGCGAAATAATACTAAGCAAAAAGGAGCAGCTAGACAACCTTCTTGCTAGAGCAAAGACACCCAACTACTTACATTCTCCTTATAAGTGCGATCTGTGTTACAAGGGCTTCGTTGACGCGAGGGCCTATGATAACCACAAGATCAAACATGATTTGCGCAGTGGATCTCATGTCTGCGACATATGCCACATGCACTATCAGTCATTGCAACTGTTGCGCACGCACGCCAATAACGCACACGTGCGGATATTCAGGTGCAATAAGTGTGGGTTTATATCTCATACAGGAAATCAAGCCAGGATCCATGAGCAATGGCATAATGGTCATACTTATGAATGTCAACTATGCAGCCATACATTCAGGAAGCCGACGTCATATTTCTCGCATATGCGCAAGAGGCATCCGACGGAGCACGTGTGTAACATCTGCGGGGAGACGTTCGTGGGCAAGCATGGACTGCAGATGCACAAGCGGAAGACACACATCAATGGAGAAAAGATGGTGGACCCCAACGACCCGGAAGACCCGGCCTCCAAGAGGTTCTGCGCTGAATGTAACGTACAGTTTTATAACTCAGAAGCCTGGAAGCGACATATACTTTGCTCCGTCAAACATACGCTCAAAACTGAAGAGAGTAAAACCTGCTCCATCTGTCCTTGGAAGTACATCGGCAACGTGTCGTTAGAGACGCATATGAAGGAGCACGCGAAGGCGCTGCGTCGCTCCAGGAAGCCACCCGCCACTGCCAAGGATCGAATCTTTAGATGCAATCAGTGCGGCTCAAACTTCATGACGCGCTCCAAGCTACAAGCTCACATCAACAGAACGCACTTGGGACTGAAATACAACAAGAATATCGTTTGTGAAGTTTGTGGCAAGAAATGTACGTCAAACGCCACCCTGAAATACCACCAACGCACGCACACGGGTGAGAAACCATACTCCTGCGCAACTTGTACGAAACACTTCGTGGACAGCAATCAACTTCGGATCCACACTCGCACCCATACCGGAGAGAAACCGTATGTGTGTGCGCACTGCGGGAAGAGGTTCTCGCAGAAACCGGCGCTCAATAGACATTATAGAGTCCACACAGGAGCAAAGCCCTACACATGCCAATACTGCTCAAGAACATTCAGCCAATCAAACTCACTGAAACTCCACGTTAAAACAGTTCACTTAAAACAACCGGCCAACAGCAGGAAGAACAGAACGAAAACCGTTAATCAAGACACTAAAGTAGAGAAGAATTGTGAAGAATTGGAGACTGGGGCGTTAGATAATAGATAA
Protein Sequence: MEKLSMCRICLVENVRMYVVADKNLEEIYEKLTDIPFVTEDSRPMLACYFCYAKLKQCCRFKRKCLEAEELFAQMLNEDYEIKPLQIKGEPDYLGGFIKTSIQHISIVDAGQAESDDAIKEEIPVCERLVDGIELKVEHHSDDREPDNVDGIYPEVDDIPAHHSGSDSEDDVPLMKFKTELGEEQEVSKKKKQIKRKTRKPDCSEIILSKKEQLDNLLARAKTPNYLHSPYKCDLCYKGFVDARAYDNHKIKHDLRSGSHVCDICHMHYQSLQLLRTHANNAHVRIFRCNKCGFISHTGNQARIHEQWHNGHTYECQLCSHTFRKPTSYFSHMRKRHPTEHVCNICGETFVGKHGLQMHKRKTHINGEKMVDPNDPEDPASKRFCAECNVQFYNSEAWKRHILCSVKHTLKTEESKTCSICPWKYIGNVSLETHMKEHAKALRRSRKPPATAKDRIFRCNQCGSNFMTRSKLQAHINRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGEKPYSCATCTKHFVDSNQLRIHTRTHTGEKPYVCAHCGKRFSQKPALNRHYRVHTGAKPYTCQYCSRTFSQSNSLKLHVKTVHLKQPANSRKNRTKTVNQDTKVEKNCEELETGALDNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01527600;
90% Identity: iTF_00952072;
80% Identity: -