Basic Information

Insect: Mamestra brassicae
Gene Symbol: -
Assembly: GCA_905163435.1
Location: LR991017.1:7507335-7520873[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0046 0.38 12.0 0.5 1 23 229 251 229 251 0.98

2 12 0.13 10 7.5 3.3 1 23 258 281 258 281 0.94

3 12 2.5 2.1e+02 3.4 1.0 1 23 285 307 285 307 0.76

4 12 0.00082 0.068 14.4 5.2 1 23 312 335 312 335 0.98

5 12 8e-05 0.0067 17.6 2.5 1 23 339 362 339 362 0.97

6 12 0.24 20 6.6 0.1 3 20 383 400 382 401 0.94

7 12 0.0008 0.067 14.4 0.1 2 23 415 436 414 436 0.97

8 12 4.3e-05 0.0036 18.4 1.5 1 23 455 478 455 478 0.98

9 12 6.9e-06 0.00058 20.9 1.9 2 23 488 509 487 509 0.97

10 12 2.5e-05 0.0021 19.1 3.1 1 23 515 537 515 537 0.99

11 12 1.4e-07 1.1e-05 26.3 1.5 1 23 543 565 543 565 0.98

12 12 3.6e-06 0.0003 21.8 2.2 1 23 571 594 571 594 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0046	0.38	12.0	0.5	1	23	229	251	229	251	0.98
2	12	0.13	10	7.5	3.3	1	23	258	281	258	281	0.94
3	12	2.5	2.1e+02	3.4	1.0	1	23	285	307	285	307	0.76
4	12	0.00082	0.068	14.4	5.2	1	23	312	335	312	335	0.98
5	12	8e-05	0.0067	17.6	2.5	1	23	339	362	339	362	0.97
6	12	0.24	20	6.6	0.1	3	20	383	400	382	401	0.94
7	12	0.0008	0.067	14.4	0.1	2	23	415	436	414	436	0.97
8	12	4.3e-05	0.0036	18.4	1.5	1	23	455	478	455	478	0.98
9	12	6.9e-06	0.00058	20.9	1.9	2	23	488	509	487	509	0.97
10	12	2.5e-05	0.0021	19.1	3.1	1	23	515	537	515	537	0.99
11	12	1.4e-07	1.1e-05	26.3	1.5	1	23	543	565	543	565	0.98
12	12	3.6e-06	0.0003	21.8	2.2	1	23	571	594	571	594	0.98

Sequence Information

Coding Sequence: atggaaaaactGTCAATGTGTAGAATATGCTTAGTGGAGAATGTTCGCATGTATGTGGTAGCCGATAGGAACCTGGAGCAGATATATGAGCGGTTGACTGATATTCCATTTGTAACTGAAGACAGTAGACCGATGCTTGCTTGTTACTTCTGCTACGCTAAACTGAAGCAATGCTGTCGATTCAAGAGAAAATGTCTGGAAGCTGAGGAACTGTTTGGTCAGATGTTGAATGAAGATTATGAGATAAAGCCACTACAGATAAAAGGTGAACCAGATTATCTTGGTGGGTTCATAAAAACGTCAATTCAACACATAAGTATAGTAGATGCTGGTCAAACGGAAAGTGATGCTATCAAAGAAGAAGCTGTTTGTGAGAGGCTAGTTGATGGTATTGAGCTGAAAGTGGAACATCACAGTGAAAAGCTAGAACCGGATAACGCAGACAATAGCTATGCAGATGTAGAAGATATACCAGCACACCACTCTGGATCGGACTCAGAAGATGATGTGCCGTTGATGAAGTTTAAAACAGAACTGGAGGAAGAGCAAGAAGTATCGAGAAAGAAGAAACGAGTTAAGAAGAAGACTCGCAAGCCCGACTGTAGCGAGATAATCCTAAGCAAGAAGGAACAGTTAGACAACCTCCTTGCTAGAGCGAAGACTTCGAACTACTTGCATTCTCCGTACAAGTGTGATCTGTGTTACAAGGGCTTCGTTGACGCACGGGCCTACGATAACCATAAGATCAAACACGATTTGCGCAGTGGGTCCCACGTCTGCGACATATGCCACATGCACTATCAATCTCTGCAACTGTTGCGCACGCACGCCAATAACGCACACGTGCGGATATTCAGGTGCAATAAGTGCGGTTTTATATCTCATACGGGCAACCAAGCCCGGATTCACGAGCAATGGCACAACGGCCATACTTATGAATGCCAGCTCTGCAGCCATACGTTCAGGAAGCCGACGTCATATTTCTCGCACATGCGCAAGCGCCACCCGACGGAGCACGTGTGTAACATCTGCGGGGAAACGTTCGTGGGCAAGCATGGACTGCAGATGCATAAACGGAAGACGCATATTAATGGCGAAAAGATGGTGGACCACAACGATCCAGAAGATCCGGCCTCCAAGAGGTTCTGCGCTGAATGTAACATACAGTTTTATAACTCAGAAGCCTGGAAGCTACATATACTGTGCTCCGTCAAGCATACACTCAAAACAGAGGAGAGtaaAACCTGTTCTATCTGTCCTTGGAAGTATATCGGTAACGTATCCTTGGAGACACATATGAAGGAGCACGCTAAAGCGCTGCGTCGCTCCAGGAAACCACCCGCCACTGCCAAGGAACGCATCTTTAGATGCAATCAGTGCGGCTCCAACTTCATGACGCGCTCCAAGCTACAAGCTCACATCAACAGAACGCATCTGGGACTGAAATACAACAAGAACATCGTTTGCGAAGTTTGTGGAAAGAAATGTACGTCAAACGCCACCCTGAAATACCACCAACGCACCCACACTGGTGAGAAACCTTACTCCTGCGGCACTTGTACGAAACACTTCGTGGACAGCAATCAGCTTCGGATACACACTCGGACACATACGGGGGAGAAGCCGTATGTGTGTGCGCATTGCGGGAAGAGATTCTCGCAGAAACCAGCGCTTAATAGACATTATAGAGTACACACCGGAGCTAAACCTTACACCTGTCAATACTGTTCAAGAACATTCAGCCAGTCAAACTCCTTGAAGCTTCACGTGAAGACGGTTCACTTGAAGCAGCCCGCGACCAGCAGGAAGAACAAGACGAAAAACGTTACTCAAGAGACTAAAGTGGAGAAGAATTGTGGAGAATTGGAGACTGGGGCGTTAGAGAATATTAGGGTTTATGTAAAGTAG
Protein Sequence: MEKLSMCRICLVENVRMYVVADRNLEQIYERLTDIPFVTEDSRPMLACYFCYAKLKQCCRFKRKCLEAEELFGQMLNEDYEIKPLQIKGEPDYLGGFIKTSIQHISIVDAGQTESDAIKEEAVCERLVDGIELKVEHHSEKLEPDNADNSYADVEDIPAHHSGSDSEDDVPLMKFKTELEEEQEVSRKKKRVKKKTRKPDCSEIILSKKEQLDNLLARAKTSNYLHSPYKCDLCYKGFVDARAYDNHKIKHDLRSGSHVCDICHMHYQSLQLLRTHANNAHVRIFRCNKCGFISHTGNQARIHEQWHNGHTYECQLCSHTFRKPTSYFSHMRKRHPTEHVCNICGETFVGKHGLQMHKRKTHINGEKMVDHNDPEDPASKRFCAECNIQFYNSEAWKLHILCSVKHTLKTEESKTCSICPWKYIGNVSLETHMKEHAKALRRSRKPPATAKERIFRCNQCGSNFMTRSKLQAHINRTHLGLKYNKNIVCEVCGKKCTSNATLKYHQRTHTGEKPYSCGTCTKHFVDSNQLRIHTRTHTGEKPYVCAHCGKRFSQKPALNRHYRVHTGAKPYTCQYCSRTFSQSNSLKLHVKTVHLKQPATSRKNKTKNVTQETKVEKNCGELETGALENIRVYVK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01527600;
90% Identity: iTF_00852057; iTF_00300487; iTF_00851034; iTF_00974010;
80% Identity: -