Basic Information

Insect: Melanchra persicariae
Gene Symbol: -
Assembly: GCA_947386135.1
Location: OX376649.1:16208753-16217259[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 23 0.0095 0.72 10.9 1.6 3 23 646 667 645 667 0.96

2 23 0.21 16 6.7 0.3 1 22 1053 1074 1053 1074 0.95

3 23 9.3 7.1e+02 1.5 0.3 1 20 1116 1135 1116 1139 0.80

4 23 0.0035 0.26 12.2 4.0 2 22 1149 1169 1148 1169 0.93

5 23 0.092 7 7.8 0.1 2 23 1177 1199 1176 1199 0.89

6 23 0.017 1.3 10.0 0.2 3 23 1220 1241 1218 1241 0.96

7 23 0.0048 0.36 11.8 4.2 1 23 1247 1270 1247 1270 0.95

8 23 0.12 9.5 7.4 0.0 1 23 1296 1319 1296 1319 0.90

9 23 0.019 1.4 9.9 3.4 1 23 1324 1346 1324 1346 0.97

10 23 0.0086 0.65 11.0 0.2 1 23 1352 1375 1352 1375 0.95

11 23 0.004 0.3 12.1 0.8 1 23 1388 1410 1388 1410 0.97

12 23 0.00018 0.013 16.3 1.8 1 23 1460 1483 1460 1483 0.97

13 23 0.00035 0.026 15.4 0.9 1 23 1542 1565 1542 1565 0.96

14 23 0.0024 0.18 12.8 2.1 2 23 1593 1615 1592 1615 0.95

15 23 0.039 3 8.9 0.1 2 23 1621 1643 1620 1643 0.94

16 23 0.0098 0.75 10.8 0.2 1 21 1687 1707 1687 1708 0.95

17 23 0.00042 0.032 15.1 1.0 1 23 1718 1740 1718 1740 0.93

18 23 0.00011 0.0084 16.9 0.3 2 23 1833 1855 1833 1855 0.93

19 23 3.9e-07 3e-05 24.7 1.4 3 23 1862 1882 1861 1882 0.98

20 23 0.028 2.2 9.4 0.4 1 23 1900 1922 1900 1923 0.95

21 23 0.14 11 7.2 0.0 1 23 1946 1968 1946 1968 0.98

22 23 0.027 2.1 9.4 0.6 1 23 1974 1997 1974 1997 0.95

23 23 0.00025 0.019 15.8 0.4 1 23 2005 2028 2005 2028 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	23	0.0095	0.72	10.9	1.6	3	23	646	667	645	667	0.96
2	23	0.21	16	6.7	0.3	1	22	1053	1074	1053	1074	0.95
3	23	9.3	7.1e+02	1.5	0.3	1	20	1116	1135	1116	1139	0.80
4	23	0.0035	0.26	12.2	4.0	2	22	1149	1169	1148	1169	0.93
5	23	0.092	7	7.8	0.1	2	23	1177	1199	1176	1199	0.89
6	23	0.017	1.3	10.0	0.2	3	23	1220	1241	1218	1241	0.96
7	23	0.0048	0.36	11.8	4.2	1	23	1247	1270	1247	1270	0.95
8	23	0.12	9.5	7.4	0.0	1	23	1296	1319	1296	1319	0.90
9	23	0.019	1.4	9.9	3.4	1	23	1324	1346	1324	1346	0.97
10	23	0.0086	0.65	11.0	0.2	1	23	1352	1375	1352	1375	0.95
11	23	0.004	0.3	12.1	0.8	1	23	1388	1410	1388	1410	0.97
12	23	0.00018	0.013	16.3	1.8	1	23	1460	1483	1460	1483	0.97
13	23	0.00035	0.026	15.4	0.9	1	23	1542	1565	1542	1565	0.96
14	23	0.0024	0.18	12.8	2.1	2	23	1593	1615	1592	1615	0.95
15	23	0.039	3	8.9	0.1	2	23	1621	1643	1620	1643	0.94
16	23	0.0098	0.75	10.8	0.2	1	21	1687	1707	1687	1708	0.95
17	23	0.00042	0.032	15.1	1.0	1	23	1718	1740	1718	1740	0.93
18	23	0.00011	0.0084	16.9	0.3	2	23	1833	1855	1833	1855	0.93
19	23	3.9e-07	3e-05	24.7	1.4	3	23	1862	1882	1861	1882	0.98
20	23	0.028	2.2	9.4	0.4	1	23	1900	1922	1900	1923	0.95
21	23	0.14	11	7.2	0.0	1	23	1946	1968	1946	1968	0.98
22	23	0.027	2.1	9.4	0.6	1	23	1974	1997	1974	1997	0.95
23	23	0.00025	0.019	15.8	0.4	1	23	2005	2028	2005	2028	0.96

Sequence Information

Coding Sequence: ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGCATGACTCGGAACCTCCCGTCCTCGCTTTGAAAATCAAGGATTGTGTGTCCGTACAGATAAACGAAAATGACGACCTGCCTACTAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCAGGTTTTTAAAAATGTATGTGAAAGGGCACAAAACAAACTACAGTCTCTGAAAGATGGCAGCCAACTAGAAGAGGTGAAAATAAAAAGTGAACCACTATCTGATGAGGCTTATGATGATGGAGTGGTCATTGATGGCTCATATCCTGTCATTGAGAATGCTGGCTTTTCAAACAAAGTACAACCTGAAGGTCCCCCAATCTTGGCTTCATTGGGGCTCACACCAAGAAGTGATAAGAGATGTGTGGATCCACGAATGGATTGGCATCGGGTCCATGCAATTTTGGACATGGTTCAAGACAATGAGGTGATTGACTCTCTGCAGACAAAGGAAGAGTGTGATGTTTTGCAGCGATCTGATCATGACTCAGACTCAGAAGCCGAACTCCAAACAGAAATTGATGATCATTATGTTGATTGCAAAAGCGGTTACATTTGCAAAAATAAAAAAGTTATATCAAAAGCTCCAAAACTATCAACTTCCGTAAACAATGCCAGAATGAAAGAAGCTTTCAAACTCAGGAAACGTAAACTAGAAGTTCGTAAACATTGTTCACAACCTAAAAATGCGTGGCAATTGTTATTCACCGATGACCTACTGGAATTGATTGTCGCTTCAACTAATGACAATATTGTGACAAATGGGAAAAGTTTCTCGGAGTCAACTAGCGTCAGCGAAATTAAAGCGCTTATCGGTATTCTGTATCTGCACGGCATAATGCGACCGACGCATCAGAAATGCACTGACCTTTGGAACAGTGAATGTGGCGTTCCTTGCGTCAGGAATGTCATGAAATACGAAAGGTTCAAATTCTTGCTTCAAAACATGAGCTTCGATAAGGAGGACGACGACAGCATTATACAGTTCGACATAATGAAGCGTATGCGTAAAGTATTCGAAATCTTCGCCATGAATTGCAGAACATCTCATGAGATCGAGAATGTCGCGGTTATTGATGAGATCATCGTGCCAGTTTACGGACCTTGTCCATTTCGATACGACATTGATAAGAAGCCGCTGAAGCGGGGCATAAAAATGGTATTGCTAGTTGATTCATCTACATTCTACATGAGCAATATAGACGTTATTACTGATCCTTACTTTGGCGCCGAAGAGATAACGAAAAAGTTGGTTCAGCATTTAGCTGGAACCGGCAGATCTATTGTTATGGACAGCTGGTTTACATCTTCCTCGTTGATGGATAGCCTTAAAAATGAGTACCAGTTGTATTCTATCGCAGCCCTGAATCCGAAAAGTGATATGGTTCCGCCATTATTCTTATCTCAATACAGGAAAACTCGAACATTCATGTCTGGATTTATAGATCATGAAGTATCATTGACATCCTATGTCAATACAGAAGGGAAATCTGTAAATGTGTTGACAAATGAGCCTAGATATTACAGGAAAGGTCACATAAATCACACAACCGTTGTATCAGTTTATAAGAAGACTCAGTCTGCCGTAGAAGTGGTGGATGTTCTTATGAATTACTACACTACAATGCAGCACACAAATGATTGGACATTGTCTTTATTTTTCACATTGCTCAATATTGCCTCGGGTGCGGAGAGTGAAAATAATGAAGAAGACGAGGAAGAAGTTACTGAGCCCGCCCAAAATTTCCCGAAAATGCCTCACATGCCCGAGGTGTCTATTACGGTCATGAGGCCCACTGGTGAAACCCTGCACGCTCGCCAAGGTATTCACCAACTCGCCTCCAAACTGTGCCTCGTCTGCGGCCGCTCCTACAGGTACTCTCACAACGCACGCAGACATGAACTTACCTCTCACGGCTTCGACAGGTATACAAACAAAATTACGCCTAAAAAAACCCTTAATCATCTACAACCTAAACTCAGACCGAACCCATTCAACCCCAAAGCACGGATGATGCCAAATCCTATTAGTCATAAGATGCAGTTCATGAACAAGAACATGCCAACAAAAATAATGCCCATGAACAAAGTCATAATGCCACAGAAACCCATTCCAATAAAGACGTCAACAAAGACACAAAATAATTTGCCTTATCCTCTACGCATTAAAGCACTCAAAGATTTACAAATAAAGAAGAAGGAGCCTCAGATTCTAAAGACGTTGTTAACATCTAAACCTGAAGTTCTGGTTTCAGAACCAGAGATTTTAAATTCTGGGCCTGAAAGTCCAGAAACATTGATATCAGAGCCTGAAATCGCGTCTTTTCAAGTCGAAACAATTCTCACGGAACCCGACGCCGACGCATATGATGATCCTCAGCAAGGCGAAGAAGAAGTTGATGAAGAACTGCAAAACAATCAAAGTCAAAACTATGATACAGTCGATATGGACTCTGAAAACGAAATAGAGATTGCACGTCAGCAAGGCTTGGACCACGACGGTGAGGAAAATGCTGAAGGGGAAGAGAATATCGACCATGATGACGATAACAACATGGAAGGCGCTCTGAGCGATAACGAGAAAGATGGCAATGACGATACAGCTGAAAGTCAGGAGAACATGGATGAAGAAGACAGTGTTGATGTTAAACCTGAAGATCAAATGAAGGACGACGAGGATCAAGAGGAGGCTGAACATGAAGAAGTGGAGATGAATCATAACGAGAATGAGGAAGATGATGATGATGAGCTTCCAATATCGTTAGCTCCAGTCGTCGAGATAAATGAAGGATTGCAAGCCAACTCGTTTAACAGTGAAGTCCATGAAGAAGACGAGGAAGTCGAAGAAACTGTCGATCCTAATGAAACCATCGAAGATGAGGAGGAGCAGGTTAAAGAACTTGACCCCGACAAAACATATGTTACTAAAACCCAAAGAGACTTCATCCAAAAGTATCGCGACATCATTCAGCAAATCAATACGAAGCGCTGTTTGTGTTGTGACCGTGAACATCCGCGTAGAAAAGCTGTAATACAACACTTACAGAAAAACGGACACAAGGTACCGAAACACACTTGTTACAATTGTGTCATCACGTTCGGACATATTGGCGCACTACTCAGCCATATGAGGTCGAATTCTTGCACTAATTTGTGGAAGATTATCTACAATGAAAATGGCATCACTGACGACTTGGTTCTCGAAGATGAGCCGAAAGAGGTCAAGGTGGCTTACAAAGATATTTTCAATGCTAGGTCGTACGCTTGCAAGCTCTGCCCAGCAAAATTCCAACTGAAACAGTTTATCATGAAGCATGTAGCAGATACTCATGAAGATGGCCAGTCTAGGGTACAGCTCTGCTGTGTCCACTGCCGCGCTAGGTTCAAAGATAAGAGTTTACTGAAGAAGCATATTCGTAAAGGCGATTGTACAGTTTATATCTCTTGTGATTTGTGCTCAGAAACGTTCAGAAACATGCAGGACTTCAACGACCACGCGCTAGCCATCCACGCTGGCAGTTTCGATCAGTCGGATAATCAGAGCAAATGTGTTGATGGTCGGCCAACCGACTGTCCTTTGTGCGGAAAGAAAAACAGCAGCTATCCGAATTTAGTGAAACATTTGAAGATTATACACGCGGAGGAGAAACCTCACTACTGCCAACATTGCGACTCTAAATTCGAGCAATCAAATGATCTGAACAAACACATTTACATGGAGCATTCTGATAGGACATTAGGCATGACGCCCGCAGAGCCAGATATGTCCATTGTGAAAGAAGAAGCGGAGGAGTACCATTACTCCTGTACAGAATGTAATGCTATATTCGAAACTGTTGATGCGTGGACTGATCACCAAGTCGCCGAACATAACCAGGTAGCTCACCACTGTGACCAGTGTGAGAAGAAATTCTTGCGCCCGTCAGAGCTGGCCGAGCACAAGAACACTCATTTGAGGGTTAAGTTCTATCCTTGCAGTGTATGTCCCAACTCATACAGCACACCACAGAAACTATCTGAGCATGTGCAACAGTCACATCCAGGAATTGGCGCAGTCGCGGCAGCTGAGTCGGAATTCTTCTGCGACATCTGCATCAGAGCATTCAAAAGTCGCCAAGCTTACTCAAACCATATGCGTATTCACGCTAAAGTACCTACTACTAACAGGAAACCAACTGTAGGTAAAGAGGGATTCGCGCCGCAAATCATCGGGAAACCTATCAAACAATACCCTATGGTTCAACCTGGATTTGTGTCATTTAAACCTAACTACAACATCCCTAACGCTCCGTATTCTTGTGACATTTGTGGTAAAGGATTCATGCACAAGAAGAATATATGGAAACACAAGAAAGTGTTGCATGCCGATATTTTAGTCGATAGACACGACAGTGAAGAGAACACTATGCAAGCTTCCACTGAAGAGGAGGAATTCAACCCCGATGAGAACGGTGCCATTCTCTCAACGCCACAATTTAACAGTTTCAACTTTACGAACTTCACGAACAATGCTCAACAAACGCCACCAGACATGCCTTATGAATGTGATATATGTAGCAAACGGTTCCCGCTTAGGACCAGTTTGTGGAAACATAAGCGCGCTAAACACGGAATTGTAAACCCTAGCACTAGTGGTAACAATGATGCAACATCCACGCCATCCGCCAGCGGGGAAGGCAGTAGTAGATCTAGCTGCACTATATGTAGAATCACATTTTCAGACAAGAAATCTTATTATCGCCATCGAAAGAATGTTCACAAATCTACCGTTCAAATGTGTAAAATATGCGGCAAACCTTTAAGCTCAACATTGGAACTATACGAGCACTTGAAAGCCGCTCACGCTAGAGAATTACTTGGTTATAACGCTAACCAAGGCTCCAGTAAATCACAGGATGTGTCACAAGATATTGAACCTGATTATGAAAATGATCAGGAATCAGCCGACCCTAGCGTCGATTACCAAGCGCGCTATCCGTGCGATACCTGTGGCAAACAATTCGTTGGTCTGCTGGCATTGCAAAACCACCAGTGCATCAACCAGGTGCCATCACAACCACAGACGTTCGATTGCGAGATTTGTCACAAGAGCTACACTTCAATATCTGCATTAAAAAGCCACCGTGGATGGCATTTACGTTCGCCCGATGGAAAGGCAGCCGCCAATAACTCTGGCCTTTGGATGCCTCAGCACAAAGTTACTAGCAAGATAAGTAAACACGAAGTTATCGACCCGTCTCAACTTGCGAAGGTCACACATACTCCCACTCCCCCTCCTGTCACTGCAACCGTAGCGAAAAGGAGACTGCCACCAGAGGTCGAAGTGACAGTCGTAAATCCCAACAAGAAATTGCGCTCGGACGACTCGATCGACTTGGATTTGCAAAATTCTGGTTCTATGGAGGATAGATACTGCACGATTTGTGACAAGGAATTTACAAAACGAGCGGCTTATCAGCGCCATATGGACGAAGTACATCAACCAAACTCTGTGTTTTGTCCGGTCTGTGATAAGAGTTTTACGAGGAAGTCGACATTGCTCATTCACATGAAGAAACACTACGAGAGTGGTGAGGGCAGTTCCTCTGCTACAGGTCAAGGGGACGATGATTTCTCGTGCGATTTGTGTGGCGCTCAGTATGACACTGATCAGGCGTTGAGGGCGCACCGAGCGCGGCACCATGGAGAAGATGAAGAGTCGGCAGAAGAGAGTGATGATGGAAATGTTCCTATAGCCCCTCCTGGTGAATTTACATGTGCGCAATGCGGCGATGGCGTCGCCACTCCCAGGGACCTCATCGCCCATCGCTCAATGCACGCTACTCCCACCAAGTTCTTCTGTAACATATGCAAAGTGTACTTCGCTCGGGCGCTCGACCTGTCCTCGCACACTCGGGCGCGACACGCTGACAACGAAAAGGTATTCTTCCCGTGTGCCATGTGCGACAGGTTTTACATGAACAAGAAGAGTTTACAGCGGCACATCGAGATGGCCCACTGA
Protein Sequence: MNVNYDRVCRLCLSSRGELLPIFPTTSSHDSEPPVLALKIKDCVSVQINENDDLPTNVCRKCMDNVNNWQVFKNVCERAQNKLQSLKDGSQLEEVKIKSEPLSDEAYDDGVVIDGSYPVIENAGFSNKVQPEGPPILASLGLTPRSDKRCVDPRMDWHRVHAILDMVQDNEVIDSLQTKEECDVLQRSDHDSDSEAELQTEIDDHYVDCKSGYICKNKKVISKAPKLSTSVNNARMKEAFKLRKRKLEVRKHCSQPKNAWQLLFTDDLLELIVASTNDNIVTNGKSFSESTSVSEIKALIGILYLHGIMRPTHQKCTDLWNSECGVPCVRNVMKYERFKFLLQNMSFDKEDDDSIIQFDIMKRMRKVFEIFAMNCRTSHEIENVAVIDEIIVPVYGPCPFRYDIDKKPLKRGIKMVLLVDSSTFYMSNIDVITDPYFGAEEITKKLVQHLAGTGRSIVMDSWFTSSSLMDSLKNEYQLYSIAALNPKSDMVPPLFLSQYRKTRTFMSGFIDHEVSLTSYVNTEGKSVNVLTNEPRYYRKGHINHTTVVSVYKKTQSAVEVVDVLMNYYTTMQHTNDWTLSLFFTLLNIASGAESENNEEDEEEVTEPAQNFPKMPHMPEVSITVMRPTGETLHARQGIHQLASKLCLVCGRSYRYSHNARRHELTSHGFDRYTNKITPKKTLNHLQPKLRPNPFNPKARMMPNPISHKMQFMNKNMPTKIMPMNKVIMPQKPIPIKTSTKTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVETILTEPDADAYDDPQQGEEEVDEELQNNQSQNYDTVDMDSENEIEIARQQGLDHDGEENAEGEENIDHDDDNNMEGALSDNEKDGNDDTAESQENMDEEDSVDVKPEDQMKDDEDQEEAEHEEVEMNHNENEEDDDDELPISLAPVVEINEGLQANSFNSEVHEEDEEVEETVDPNETIEDEEEQVKELDPDKTYVTKTQRDFIQKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDEPKEVKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVADTHEDGQSRVQLCCVHCRARFKDKSLLKKHIRKGDCTVYISCDLCSETFRNMQDFNDHALAIHAGSFDQSDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHAEEKPHYCQHCDSKFEQSNDLNKHIYMEHSDRTLGMTPAEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGIGAVAAAESEFFCDICIRAFKSRQAYSNHMRIHAKVPTTNRKPTVGKEGFAPQIIGKPIKQYPMVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEEEFNPDENGAILSTPQFNSFNFTNFTNNAQQTPPDMPYECDICSKRFPLRTSLWKHKRAKHGIVNPSTSGNNDATSTPSASGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQDVSQDIEPDYENDQESADPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVPSQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPSQLAKVTHTPTPPPVTATVAKRRLPPEVEVTVVNPNKKLRSDDSIDLDLQNSGSMEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDFSCDLCGAQYDTDQALRAHRARHHGEDEESAEESDDGNVPIAPPGEFTCAQCGDGVATPRDLIAHRSMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00017541;
90% Identity: iTF_00952905;
80% Identity: -