Basic Information

Insect: Melanchra persicariae
Gene Symbol: -
Assembly: GCA_947386135.1
Location: OX376652.1:16639504-16641729[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 1.1e-07 5.3e-05 23.3 0.0 3 39 17 53 15 56 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	1.1e-07	5.3e-05	23.3	0.0	3	39	17	53	15	56	0.94

Sequence Information

Coding Sequence: ATGCCAAGGAAAAGAGAACGCACCACTACGAAAGCGTCTTGGACCGTTGAAACTTTAGAAAACGCAGTCGAAAAACTTCGGCGTGGTGGTACATCAGTATACAAGGTATCAAAAGAGACTGGAATACCCTACAGCACCTTAAAAAAGAGATTCAGGTTAGCTAAATTTAACGATACTAGCTACAAATGTCCTCCAAAACTAGGAAGGCCCTCTGTGTTTACTGTGGAACAAGAAGCCATTCTGGCTGATCATCTACAAAAAATGTCAAATAAATTTTATGGACTGACGAGGGCTCAGTTTTGTAAGGTATGTTACGCCATGGCTGAAAAAATTGGAGTTGCAGATCGATTTAATGAAACCAAAAAGTCTGCAGGCAGAGACTTTCTAAATGGCTTTTTCCAACGACATCCTAATCTAAGTATTAGAAAGCCAGAAGCGACAAGCATTAATAGGATACTTGGGTTCAATAAAGCTGAAGTGGATCGGTTCTTTGAAAATCTGGAAAATGTCATGACAAAATACCACTTCCCGCCGTCTCATATTTACAATATGGACGAGACTGGCGTAACGACAGTGCAGGAAACCGAAAAAATTATAGCGCCTAAGGGACAAAAACGTGTAGGAACAGTCACATCTTGGGAAAGAGGTAAAAACGTCACGGCTATCTGTGCTATGAGTGCTTCAGGGTCCTTCATTCCGCCTCTTTTTATTTTCCCTCGACAGCGTCACTCACCGCAACTAGAAAAAGATGGTCCTCCAGGAGCTGTTTACACATGTTCTCATAATGGTTGGACAAACGAAAGCATATTCATTAAATGGCTGCGACATTTTATTGAGTACTCAAAACCCGCTGCTGAACAACCTGTTCTACTGATTATGGACAATCACAACAGTCATTGTACTTTGGAAGCTTGGGAAGTGGCTAAAGCCAACCATGTTGTAATGCTATCAATTCCACCACATTCATCACATCGGTTACAGCCTCTGGATGTAACCTTTTTTGGGCCGTTCAAAAGAGCCTACAACAAGGAATGCGACATGTTTATGAAATCCAGGAATATGGTAAAAATTACACCCTACGATATTGCAGGATTGTTCAACAAAGCTTATGCCAGAGTAGCAAGCTTAGACAAAGGGATCTCTGGCTTTAAAGCCACAGGAATATATCCCATGAATCCTGCTATTTTTTCAGAAGACGATTTTGTTGCTGTGGATGGAGATCAGAGCCAAGTTAATGAGCAAGCAAGCTCAGATGTTGTTGTTCAGTTTCAAAGACCCACTTCTCAACGGCTAGTTACTGGAAACTCTGACCCACTTCCGTGTACATCTCGTGATATTGGCCACTTCGAACTGCTTCCATCTACATCTCGTGGTACTGGCAACTATGAACCACTTCCATCTACATCTCGTGGTATTCAACAGGAGCTGGAAATGCCTAGCTCTGTCCTGGTCGAATACACGCAAAATGTTGAAAAAGAGCAGTTACCTGATATTTACCATGCTGTAAGTCCATCAATATTAAGTGAGCTACAAGAAGAGGCATCTATAGCAAATACTACACCAAACTTTTCAACAAACACAAACCCTTCTATAATCCCGTTTTCGTTGAATGATAAAACTGCCCCCGAGCTAACTCCTGCCAATACTTCCACGACCTTGTCCACAACAAACGACGTTCAAGAACAGTCACTCTGTACAGATCCAACCATATCAAATGATTTTGCGAAAGTTCTATCAGTTGTGAGTCCACTACCTAACATATCTAACAAAAATAAGACCTTGCGAAAACAACATTCAGTAATTTTATCTAGCACGCCAATGAAAACAGTATTTGAAGAGAAAGAGAAGAAACGTCTAGAGAAAAAATGTAAAACTAAAATCATTGCTAAGAAGAAAGGAGAAACCAGCAAAAAAGAAAGAATATGTACCGCAGGAAAAGGAAAAAAACGAAAGGACGCAACCAACAAAAACGAGAAAGTTAAAAGAATAAAAAAGAAACTTTTTGAGGATGAAACTGACACGTCTGAAGAAGAAAACCTTGAGAATATTTGTGATGATGAATCAGAATATTCAGAAGAAGAGACATTGTGTGCTATTTGCTGTGACTCAGGAAAAGATAACGAAATGTGGTACCGTTGCAGAGGTTGCGGTAATTGGGCACACAAAGAATGTTCTGGTTCTGACAGCCCGGTTGATTATATTTGCATTTTTTGCTTGGATCCTTAA
Protein Sequence: MPRKRERTTTKASWTVETLENAVEKLRRGGTSVYKVSKETGIPYSTLKKRFRLAKFNDTSYKCPPKLGRPSVFTVEQEAILADHLQKMSNKFYGLTRAQFCKVCYAMAEKIGVADRFNETKKSAGRDFLNGFFQRHPNLSIRKPEATSINRILGFNKAEVDRFFENLENVMTKYHFPPSHIYNMDETGVTTVQETEKIIAPKGQKRVGTVTSWERGKNVTAICAMSASGSFIPPLFIFPRQRHSPQLEKDGPPGAVYTCSHNGWTNESIFIKWLRHFIEYSKPAAEQPVLLIMDNHNSHCTLEAWEVAKANHVVMLSIPPHSSHRLQPLDVTFFGPFKRAYNKECDMFMKSRNMVKITPYDIAGLFNKAYARVASLDKGISGFKATGIYPMNPAIFSEDDFVAVDGDQSQVNEQASSDVVVQFQRPTSQRLVTGNSDPLPCTSRDIGHFELLPSTSRGTGNYEPLPSTSRGIQQELEMPSSVLVEYTQNVEKEQLPDIYHAVSPSILSELQEEASIANTTPNFSTNTNPSIIPFSLNDKTAPELTPANTSTTLSTTNDVQEQSLCTDPTISNDFAKVLSVVSPLPNISNKNKTLRKQHSVILSSTPMKTVFEEKEKKRLEKKCKTKIIAKKKGETSKKERICTAGKGKKRKDATNKNEKVKRIKKKLFEDETDTSEEENLENICDDESEYSEEETLCAICCDSGKDNEMWYRCRGCGNWAHKECSGSDSPVDYICIFCLDP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00123320;
90% Identity: iTF_00973717;
80% Identity: iTF_00449046;