Aepo018600.1
Basic Information
- Insect
- Apamea epomidion
- Gene Symbol
- -
- Assembly
- GCA_947507525.1
- Location
- OX382240.1:19443302-19445470[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-07 0.00011 22.3 0.0 3 39 17 53 15 57 0.93
Sequence Information
- Coding Sequence
- ATGCCAAGAAAAAGGGAACGCACCACTACGAAAGCGTCTTGGACCGTTGAAACCTTAGAAAATGCTGTCAAAAAACTTCGGCGTGGCGGTACATCAGTTTATAAGGTATCAAAAGAGACTGGAATACCCTACAGCACCTTAAAAAAGAGATTCAGATTAGCTAAATCCAACGATAAAAGCTACAAATGTCCTCCAAAACTAGGAAGGCCCTCTGTGTTCACTGAGGAACAAGAAGCCATTCTGGCTGATCACCTACATAAAATGTCAAATAAATTTTACGGACTGACGAGGGCTCAGTTTTGTAAGTTATGTTACGCCATGGCGGAAAAATTTGGTGTCGCAGATCGATTTAATGAAGCCAAGAAGTCTGCAGGCAGAGACTTTCTAACTGGCTTTTTCCGACGACATCCTGATCTAAGTATTAGAAAGCCAGAGGCGACAAGCATCAATAGGATACTTGGATTCAATAAAGCCGAAGTGGATCGATTCTTTGAAAATCTCGAAAATGTCATGACAACATACCACTTTCCGCCGTCTCATATTTACAATATGGATGAGACTGGCGTAACGACGGTCCAGGAAACAGAAAAAATTATAGCGCCTAGGGGACAAAAACGTATAGGAACAGTCACATCATGGGAAAGAGGTAAAAACGTCACGGCTATCTGTGCTATGAGTGCTTCAGGGTCCTTCATTCCGCCTCTTTTTATTTTCCCTCGACAGCGTCACTCACCGCAGCTAGAAAAAGATGGTCCACCAGGAGCTGTTTACACATGTTCTCACAATGGTTGGACAAATGAAAGCATATACATTAAATGGCTGCGACATTTCATTGAGTACTCAAAACCCACTGCTGAAGAACCTGTTCTACTGATTATGGACAACCACAACAGCCATTGTACTTTGGAAGCTTGGGAAGTGGCTAAAGCTAACCATGTTGTAATGCTTTCTATTCCACCACATTCATCACATCGGTTACAGCCTCTGGATGTGACTTTTTTTGGGCCGTTCAAGAGAGCCTACAACAAGGAATGCGACATGTATATGAAATCCAGGAATATGGTAAAAATTACACCCTACGATATTGCAGGATTGTTCAACAAAGCTTATGCCAGAGTAGCAAGCTTAGACAAAGGGATCTCTGGCTTCAGAGCCACGGGAATTTTTCCCATGAATCCTGCTGTATTTTCAGAAGACGATTTTGTTGCTGTGGAAGAAGATCAGAGCCAAGTTAATGAGCAAGCAAGTTCAGCTGCTGTTGCTCAGTCTCAGAGACCCGTTTCTCAACGGCTAGCTACTGGCAACTCTGACCCACTTCCATCTACATCTCGTAATATTGGCAACTTTGAACCACTTCCGTCTACATCTCGTGGTACTGGTGACTTTGAACCACTTCCATCTACATCTCGTGGTATTCAACAGGAGATGGAAATGGATAGTTCTGTCCTGATCCAATACACGCCAAATGTTGAACAAGAGCAGTTACCTGATATTGACCATGCTGTAAGTCCATCTATATTAAGTGAGCTACAAGAGGAGCCATCTACAGCAAATAGTACACCAAACTTGTCGCCAAACACAATCCCTGTTATGTTGAATGATAAAACAGTCCCGGAGCCAGATACCGCCAATCCTTCCACGACTTCGTCCACAACAAACGACGTTCAAGCACAGTCACTCTGCAAAGACCCCACCATACCAGATGATTTTGCGAAAGTCCTAGCAGTTGTGAGTCCACTACCTAACATATCTAACAAAAATAAGACTTCGCGACAAAAACAACATTCAGTAATTATATCTAGCACGCCAATGAAAGCAGTATTTGAAGAGAAGGAGAAGAAACGTTTAGAGAAAAAATGTAAAACTAAAACCACAGGAAAAGGAAAAAAACGAAAGAAGGCAACCAACAAAAAAGAAAAAGTAAAAAGAGTAAAAAGGAAACTTTTTGAGGATGGAACTGACACGTCTGAAGAAGAAGACGTTGAGAATCTTTGCGACGATGAGTCAGAATATTCAGAAGAAGAGACATTGTGTGCTATTTGCTGTGACACAGGAAAAAATAACGAAATGTGGTACCGTTGCAGAGGTTGCGGTAAATGGGCACATAGAGAATGTTCGGGTTCTGACAGCCCGGTTGATTATATTTGCGTTTTTTGCTTGGATCCCTAA
- Protein Sequence
- MPRKRERTTTKASWTVETLENAVKKLRRGGTSVYKVSKETGIPYSTLKKRFRLAKSNDKSYKCPPKLGRPSVFTEEQEAILADHLHKMSNKFYGLTRAQFCKLCYAMAEKFGVADRFNEAKKSAGRDFLTGFFRRHPDLSIRKPEATSINRILGFNKAEVDRFFENLENVMTTYHFPPSHIYNMDETGVTTVQETEKIIAPRGQKRIGTVTSWERGKNVTAICAMSASGSFIPPLFIFPRQRHSPQLEKDGPPGAVYTCSHNGWTNESIYIKWLRHFIEYSKPTAEEPVLLIMDNHNSHCTLEAWEVAKANHVVMLSIPPHSSHRLQPLDVTFFGPFKRAYNKECDMYMKSRNMVKITPYDIAGLFNKAYARVASLDKGISGFRATGIFPMNPAVFSEDDFVAVEEDQSQVNEQASSAAVAQSQRPVSQRLATGNSDPLPSTSRNIGNFEPLPSTSRGTGDFEPLPSTSRGIQQEMEMDSSVLIQYTPNVEQEQLPDIDHAVSPSILSELQEEPSTANSTPNLSPNTIPVMLNDKTVPEPDTANPSTTSSTTNDVQAQSLCKDPTIPDDFAKVLAVVSPLPNISNKNKTSRQKQHSVIISSTPMKAVFEEKEKKRLEKKCKTKTTGKGKKRKKATNKKEKVKRVKRKLFEDGTDTSEEEDVENLCDDESEYSEEETLCAICCDTGKNNEMWYRCRGCGKWAHRECSGSDSPVDYICVFCLDP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00374039; iTF_01525958; iTF_01525957; iTF_00449044; iTF_01026114; iTF_00449043; iTF_00449045; iTF_00449046; iTF_00449047; iTF_00449048; iTF_01029208; iTF_00449049; iTF_01029209; iTF_01027258; iTF_00973723; iTF_01027259; iTF_01085147; iTF_00791141; iTF_01230514; iTF_00973717; iTF_00040760;
- 90% Identity
- iTF_00374039; iTF_01525958; iTF_01525957; iTF_00040760;
- 80% Identity
- -