Mper000410.1
Basic Information
- Insect
- Melanchra persicariae
- Gene Symbol
- -
- Assembly
- GCA_947386135.1
- Location
- OX376652.1:9482808-9484955[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.3e-09 3.5e-06 27.1 0.1 4 40 18 53 15 58 0.88
Sequence Information
- Coding Sequence
- atggcgcgaaacaaagtaataataagaaaaagagggggacattcggctgccgacatgcttaaggctcttaaactgcacagatcaggtgaaagtatcagaaaagcagcgaaaatttataatattgcttatccaaccttacgacggtacgtagcacaaaacttagacgtcaatacagaggatcttgccgagaagagattggtaccgaattatgaaaatcatttaatttttaccgcagaactagaagatatttataaagagtacataaaggagtgtgctctgaaattttacggactgaccacaaaagactgccgtaaagtggcgtaccagatggcgaaagtaaataatgtgacaatgccagatagctgggagcgagaaaaattggcaggaaaagagtggttacggtcatttaagaaacgccatcttgatctttcaataaaaaaacctgaagcttgcagcttagcccgtgcgacagcttttaatcgcgagacggttaagtctttttttgataatttgaagatagcaatgagtcgtcatccgtctttcagcactggttgtcgtttgtataatttggacgaaacagccacgacgacggttcagcgtccccaaaaagtagtggggcctaagggaaagtttaatattgcaaaggtgaccagtggcgaaaagggaactctagtaaccacttgcgctattgtttgtgcttcaggccaggctttgccaccagcgcttgtttttccgcgaaaaaattttaaagattttatgttaacgggggctcccccaggttctcttgggttagcacatgcttctgggtggatgacaagcgaattattcgttgatgttatgaaacatttcatcaaacatgctgccgccagtctagataaccctgcgcttttaatcttagacaaccatgagtctcatctttccattgaagccttagaattagcaaaaaaatcgggtgtcacaatgctcactttgcatcctcacaccactgccaagatgcaacctctagatgtcgggttaaatgccccctttaaagttttttataacagCGCCATAGACTCCTGGATGATGAGGAACCCAGGAAAGCCCATGACAATTTACAACGTAGCGGAGTGCGTTGGAGTGGCCTACGCCAGGGCAATGACACCCATGAATATATCCGCAGCCTTTAAGAAATGTGGCATATATCCCTTTGACCCAGAAGTCTTCACGGACATCGATTTTTTGCCATCAGACGTGACGGACAGACCCAAACCAGAGCTCCAAGATCAAAATTTAGATCCTAATATCGAAAATGTTGAAATCGAATCCGTTAAATCTGATGACACATTTTATGAAGACGGAAAAGTAAGCCCATCAATTTTAAACACCGATTGTATGGTAGAGACTCCAGTTGTAAATGAAGTTACGGAAAATAATTTCGAAATGCAACCCCAGAAATTTCATAGCTCAACAATAGCAGGATTATCTACGATGTCTTCATTCATTTCACCTAAGCAATTTATGCCACCACTTAAAGCTAGCCCCCGATCTAGTAACAGGAAAGCTAGGAAACCAGGAAAAAGCAGAATTGCAACAGACACTCCGGAAAAAAATGAAATTATAGAAAGCAAGAAGAAGCGTAAAGAAACTAAAACTAAAGTAAAAGAAGTTAAACGCACCGTGCTTTCAGATAAAAAAGTTAAAATAAATACCCTAAAGAAAAAGATAATGAAAAAGGTAGATAGAGATGAATCTACTTCTGAAGAAGAACTTGAAACGGTGTTAGAAGAGAGCGAGACTGAAATCAGTGAGATAGATGAGTCCGAAGATGAAGAAGAAATGTTTGTTGTGAGAGGAAATTTCGATAAATTGACCCGTGATCCCGTTGAAGATAACTATGTGCTCGTGGTTTTTGATGCAAAAAATATTAAGGTTTATTATGTAGCCAAGATCATTGAAGTTGACAAACCTTACTATGGAGTTTCATTCATGCGGTTAATGAACAAAGAAACCATGAAATTCCGGATGCCTTTGGAACCCGATTTGGCTAATGTCCAATTAAAGGATATTAAAATGATTTTGCCACCACCAAAAATTAATGGAACACAAAACCGAAACTCGACATATAACTTTCCGATACGCGTTGCTCCAACTATTAACTTGCGTTAA
- Protein Sequence
- MARNKVIIRKRGGHSAADMLKALKLHRSGESIRKAAKIYNIAYPTLRRYVAQNLDVNTEDLAEKRLVPNYENHLIFTAELEDIYKEYIKECALKFYGLTTKDCRKVAYQMAKVNNVTMPDSWEREKLAGKEWLRSFKKRHLDLSIKKPEACSLARATAFNRETVKSFFDNLKIAMSRHPSFSTGCRLYNLDETATTTVQRPQKVVGPKGKFNIAKVTSGEKGTLVTTCAIVCASGQALPPALVFPRKNFKDFMLTGAPPGSLGLAHASGWMTSELFVDVMKHFIKHAAASLDNPALLILDNHESHLSIEALELAKKSGVTMLTLHPHTTAKMQPLDVGLNAPFKVFYNSAIDSWMMRNPGKPMTIYNVAECVGVAYARAMTPMNISAAFKKCGIYPFDPEVFTDIDFLPSDVTDRPKPELQDQNLDPNIENVEIESVKSDDTFYEDGKVSPSILNTDCMVETPVVNEVTENNFEMQPQKFHSSTIAGLSTMSSFISPKQFMPPLKASPRSSNRKARKPGKSRIATDTPEKNEIIESKKKRKETKTKVKEVKRTVLSDKKVKINTLKKKIMKKVDRDESTSEEELETVLEESETEISEIDESEDEEEMFVVRGNFDKLTRDPVEDNYVLVVFDAKNIKVYYVAKIIEVDKPYYGVSFMRLMNKETMKFRMPLEPDLANVQLKDIKMILPPPKINGTQNRNSTYNFPIRVAPTINLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00924582;
- 90% Identity
- iTF_00237481; iTF_01425001; iTF_00973709; iTF_00973712; iTF_00810001; iTF_00973713; iTF_00810002; iTF_00810003; iTF_00973715; iTF_01084196; iTF_00237478; iTF_00237479; iTF_01026062;
- 80% Identity
- -