Lnic037066.1
Basic Information
- Insect
- Luperina nickerlii
- Gene Symbol
- -
- Assembly
- GCA_963855955.1
- Location
- OY979691.1:4325365-4327512[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-09 2.1e-06 28.5 0.1 3 41 17 54 15 57 0.89
Sequence Information
- Coding Sequence
- ATGGCGCGAAAAAAGGTATTAGTGAGAAAAAGAGGTGGACATTCGGCTACCAATATGCTTAAGGCTCTTCAGTTACATAGATCAGGTGAAAGTATTAGAAAAGCAgcgaaaatttataatattgcgtACCCAACCTTACGACGCTACGTAGCACAAAACTTGCACGTCAACGTAGAGGACCTTGCTGAGAAGAGATTGCTACCGAATTATGAAAATCATCTCGTTTTTACCGCTGAACAAGAAGAAGTTTATAAAGAGTATGTAAAGGAGTGCGCTCTAAAGTTTTATGGACTGACACCAAAAGACTGCCGCAAAGTGGCGTACCAAATGGCGAAAGTAAATAACGTAACTATCCCAGAGTGTTGGGAGCGAGATAAAATGGCAGGAAAGGAGTGGTTTCGGTCATTTAGGAAACGCCACCTTGATCTCTCAATAAAGAAGCCTGAAGCATGCAGCTTAGCCCGCGCGACAGCGTTTAACCGGGAGACGGTCAAATCATTCTTTGATAACTTGAAGACAGCTATGGGTCGTCATTCATGCTTCAGCACTGGTTGTCGTTTGTACAATTTGGACGAAACAGCCACAACGACTGTCCAGCGTCCACAAAAAGTTGTAGGACCTAAGGGAAAGCACAATATTGCAAAGGTCACCAGTGGCGAAAAGGGCACTTTGGTAACCACATGCGCGATAGTATGTGCTTCAGGTCAAGCCTTACCACCTGCGCTTGTCTTCCCGCGCAAAAATTTCAAGGATATTATGTTGACAGGTGCTCCTCCAGGTTCTCTTGGGTTGGCACATTCTTCTGGGTGGATGACGTccgatttatttattgaagtgatGAAGCATTTCATTAAACATACCGCTGCTAGCCCAGAAAACCCTGCACTTTTAATCTTAGACAATCACGAGTCACACCTGTCAATCGAAGCCTTAGAATTGGCAAAAAGTTCGGGTGTCACTGTTCTAACATTACATCCTCACACCACTGCCAAGATGCAGCCTCTGGATGTGGGGTTAAATGGCCCCTTTAAAGTCTATTATAACAGTGCAATCGACTCCTGGATGGTCAGACATCCAGGAAGGTCTATGACGATCTACAATGTGGCGGAGTGCGTTGGAGAAGCTTACGCTAGGGCAATGACACCCGTGAACATTTTCGCAGCTTTTAAGAAGTGTGGAATATTTCCCTTTAACCCAGAAGTGTTCACTGACATCGATTTTTTGCCATCCGATGTGACTGACAGACGTGACCCTGAGCCACAAGATCAAATTTTAGATCTCAATGCACAAAATGTTGAAATCCAATCTGTACAATCTGATGATACATTTTGTGAAGACGGAAACGAAAGTCCATCATTGTTAAACACTGATAATTTGGCAGAGACTCCAACTATTAACGAGTCAACGGAAAGTATTTCAAAGACACTACCCCGGATTCTTCAAAGTTCACCAGGATCAGGATCATCAAAGAAGATCTCTTTCGTTTCACCAAAACAATTTATGCCTCCACTTAAAGCTGGTCCCCGATCTACTAACAGAAAAACTAGAAAAAGAGGAAAAAGCAGGATTGCAACGGACACTCctgaaaaaaatgaaattatagaAAGCAAGAAGAAGCGGACAGAAAAAAAAGCTAAAGTAAAGGAAGTGAAACGCACTGTGCTTTTAGATAAAAAGGTGAAAAGAAATGTCCCAAAGAAAAATAAGGTAAAGAAGGTTGATACAGACGAATCTACTTCTGAGGAAGAACTTGGAATAGTGCCAGAAGTTAGTGACACTGAAATTAGTGACATAGATGTATCTGAAGATGATGAAGAAATGTTTGTTGTGAGAGGAAATTTCGAAAAATTGACTCGTAAACCAGTTGAAGATGACTATGTCCTTGTAGTTTTtgacacaaaaaatattaaagtttattATGTGGGCAAGATTATCGAAGTTGACATTCCCAACTGCGGAGTTTCATTCATGCGGCTCATTAACAAAGAAACCATGAAGTTCCGGATGCCTTTGGAGCCTGATTTGGCTAATGTCCAATTAAAGGATATTAAAATGATTCTGCCGCAACCAAAAATTAATGGAACACAAAACCGGAACTCAACGTTTAACTTTCCAATACGTGTCGCTCCTACTATTAACTTACGTTAG
- Protein Sequence
- MARKKVLVRKRGGHSATNMLKALQLHRSGESIRKAAKIYNIAYPTLRRYVAQNLHVNVEDLAEKRLLPNYENHLVFTAEQEEVYKEYVKECALKFYGLTPKDCRKVAYQMAKVNNVTIPECWERDKMAGKEWFRSFRKRHLDLSIKKPEACSLARATAFNRETVKSFFDNLKTAMGRHSCFSTGCRLYNLDETATTTVQRPQKVVGPKGKHNIAKVTSGEKGTLVTTCAIVCASGQALPPALVFPRKNFKDIMLTGAPPGSLGLAHSSGWMTSDLFIEVMKHFIKHTAASPENPALLILDNHESHLSIEALELAKSSGVTVLTLHPHTTAKMQPLDVGLNGPFKVYYNSAIDSWMVRHPGRSMTIYNVAECVGEAYARAMTPVNIFAAFKKCGIFPFNPEVFTDIDFLPSDVTDRRDPEPQDQILDLNAQNVEIQSVQSDDTFCEDGNESPSLLNTDNLAETPTINESTESISKTLPRILQSSPGSGSSKKISFVSPKQFMPPLKAGPRSTNRKTRKRGKSRIATDTPEKNEIIESKKKRTEKKAKVKEVKRTVLLDKKVKRNVPKKNKVKKVDTDESTSEEELGIVPEVSDTEISDIDVSEDDEEMFVVRGNFEKLTRKPVEDDYVLVVFDTKNIKVYYVGKIIEVDIPNCGVSFMRLINKETMKFRMPLEPDLANVQLKDIKMILPQPKINGTQNRNSTFNFPIRVAPTINLR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00924584; iTF_01401227; iTF_01401226; iTF_00744579; iTF_00744557; iTF_00744558; iTF_00934672; iTF_01464104; iTF_00973710; iTF_00237478; iTF_00237481; iTF_01425001; iTF_00973709; iTF_00973712; iTF_00810001; iTF_00973713; iTF_00810002; iTF_00810003; iTF_00973715; iTF_01084196; iTF_00237479; iTF_01030155; iTF_01091789; iTF_01026062; iTF_00896723; iTF_00896724; iTF_01282208;
- 90% Identity
- iTF_00896723;
- 80% Identity
- iTF_00924584;