Msac005222.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- -
- Assembly
- GCA_002803265.2
- Location
- NW:2820286-2828391[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.0016 19 4.9 0.1 21 44 25 48 17 57 0.79 2 9 0.00028 3.2 7.3 0.0 11 45 107 142 103 149 0.79 3 9 0.006 70 3.1 0.0 21 44 146 169 141 177 0.88 4 9 0.2 2.3e+03 -1.8 0.1 21 43 174 196 169 201 0.78 5 9 0.0012 14 5.3 0.0 20 46 201 227 183 233 0.85 6 9 0.015 1.8e+02 1.8 0.0 17 31 253 268 244 284 0.77 7 9 0.018 2.2e+02 1.5 0.0 11 30 275 295 270 301 0.83 8 9 0.00044 5.1 6.7 0.0 21 47 314 340 308 347 0.85 9 9 0.072 8.5e+02 -0.4 0.0 21 44 342 365 338 374 0.75
Sequence Information
- Coding Sequence
- atgtCATTCAATTGTGATGTATGTAATGAAGATTTTTCTTTATGTTTTTCTCGTCATGAAAGCACATGTGCAATAGATAATCCATGTATATGTGTCATCTGTTTTAAAGTGTTTTCTTCAGAATATGAATTAACAAAGCATGAAAAGACACATAATGAGGAAAAGCCATATGGATGTGATAGTGATGAAACATTTCCTCCAGTAGAGAATTTAAAAAGCCATACAAAAACACATTCAAACGAAATATCATTCAAATGTGATGTATGTAATGAAGATGCTTCTACATGTTATACCCGTCATGAAACATTTTCTCAAACAGGAACTTCAAAAAGTCATAAAagcacatataaaataaaaaagccaTTTATATGTGATATCTGTTTTAAAGTTTGTTCTTCAGAATCTAATTTAGCAATGCATGACAGGATACATACTGGGGAAAAGccgtataaatgtaatatttgtgGTATGGCGTTTTCTGTAgaatcaaatttaacaaaacatataaGGACACATACAGGAGAAATGCCATATAAGTGTGATGTATGTGATAAAGAATTTCCCAGATCAGATCAATTAAAATGCCATACAAGGACGCATACAGGAGAAAAGCCTTATAAATGTGATATCTGTGATGAAATGTTTTCTCACTTAGGAAATTTAAAAAGCCATATGATGTTACATACAGAAGAAAAGTCATATAACTGTGATTTTTGTGATAAAGTGTATCATACATATTCAGAATTATCGAAACATTCAAGGGCACATAGTGGAGAAAAGCCGTATAAATGTGATATCTgtgataaaacattttcttttattggaactttaaaaaatcatactaGGACACATACAGGAGAAAAGCCATATAAATGTGATATTTGTAGTAAAgggtttaaaacattttctgtTCTATTAGTGCACAAAAGAACACATACGGGTGAGAGGCCATATAAATGTGATGTCTGTGATGAAACGTTTTCTCAAGcaggaaatttaaaatgccaTATGAAGACACATACAGGGGAAAAGCCTTATAAATGTGATGTCTGTGATAAAAGTTTTCCTAATAATCCTAAGTTGACAAGGCATAAAAAAACTCACACAGGAGAAAAACCTTATAAATGTGATGAATGTAATAAAAGGTTttctttaaattcaaatttaattacacataAAAAGTTGCATGCTAagaaaaaactgtttaaatgTGATAACTGTGAAGAAACGTTTTCTCAagcaatagatttaaaaatgcattcaaaAACTCattcaaaagaaattttattcaaatgtgACGTATGTAATGAAGAGTTTTcttcaaaaactaaattaaaagtgCATATAAGGGCATATCATCCTATATAA
- Protein Sequence
- MSFNCDVCNEDFSLCFSRHESTCAIDNPCICVICFKVFSSEYELTKHEKTHNEEKPYGCDSDETFPPVENLKSHTKTHSNEISFKCDVCNEDASTCYTRHETFSQTGTSKSHKSTYKIKKPFICDICFKVCSSESNLAMHDRIHTGEKPYKCNICGMAFSVESNLTKHIRTHTGEMPYKCDVCDKEFPRSDQLKCHTRTHTGEKPYKCDICDEMFSHLGNLKSHMMLHTEEKSYNCDFCDKVYHTYSELSKHSRAHSGEKPYKCDICDKTFSFIGTLKNHTRTHTGEKPYKCDICSKGFKTFSVLLVHKRTHTGERPYKCDVCDETFSQAGNLKCHMKTHTGEKPYKCDVCDKSFPNNPKLTRHKKTHTGEKPYKCDECNKRFSLNSNLITHKKLHAKKKLFKCDNCEETFSQAIDLKMHSKTHSKEILFKCDVCNEEFSSKTKLKVHIRAYHPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00973214;
- 90% Identity
- iTF_00973214;
- 80% Identity
- iTF_00973214;