Msac005262.1
Basic Information
- Insect
- Melanaphis sacchari
- Gene Symbol
- bab2_1
- Assembly
- GCA_002803265.2
- Location
- NW:1097505-1101665[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-11 8.8e-09 34.3 0.0 2 38 446 483 445 488 0.89 2 4 9.7e-12 7.6e-09 34.6 0.1 2 39 500 537 499 540 0.94 3 4 1.4e-15 1.1e-12 46.8 0.0 3 45 556 599 554 599 0.96 4 4 4.8e-17 3.7e-14 51.5 0.1 1 43 606 649 606 651 0.96
Sequence Information
- Coding Sequence
- atgttattttttgaatatttcagaAGTACAATGACAGTTAATGGCCAGCACTACTGTCTGCGATGGAACAATTACCAATCAAATATGACCTCTGTGTTTCATCAACTTCTTCGAAATGAATCATTTGTTGATGTTACTCTTGCTTGTAATGAGAGTACACTTAAAGCACACAAAGTGGTCTTATCAGCTTGTTCGTCCtatttccaaaaattattgatgGATAACCCATGTAAACATCCAACCATTATATTGCCTTATGATGTTTGTTTTAATGACCTTAAGTTCATCATAGAGTTTGTGTATAGGGGCGAGATTGATGTATCTCAAGCTGAATTACAAtctCTTCTAAAAACAGCAGACCAGTTAAAGATTAAAGGACTATGTGAAGTGCCTGAAGATGAACGTGATACATCTATTGTTGCCGAAGTAACTCCTTTGGGGCCATTAAAAAGTGGTGGAAGAGTGTTCACAAAATTACAACGCAGAACTTCtccttattcaaaaaaattgagcCCTAATCAAATTCAACAGGATCAGTTTAATCGAAGTTATTATCGAATTGAACAATCAGGTTTTGCACCTATTAGTGTTGATCAAGAAAACAAatctataaatGCCATCCATTGCATGACTGTAGCAACATCAACTGAAGATGATGAGAAAGAAATGAAGTCAACATTAACAGATTTACCGGTGGTTATATTAGAACCACATccttcattaaatttacaagcCCAACAACAGTCCCAGATAGTTCACATACCAATACCACCatcacaacaacaacaacaacaacaacaacaacaacaacaacaacaacaactaaGTCATGTAACACAACATACAAATCAACCTCAATTGCAACAAGCTGCAGTTCAAACTCATtcacaaATGATTATTACAACAGGTCCAGTTATGACGGTGAATGAAGCTGACATTTCACCTGATATACAGCCTGTTGGACCAAGGGCAACACCAGTAccagtaaaaaataacacaagtCCCTCATCAACACCTACACATAGAGATATGGCTGttggtACATCATGTTCAAATGATATGATGAGAAGTGGTGGAAGTGAGAGAAAATTTGAAAGTACTAAATTTGAAACACTTCGTACTATTGATCAGTCATCAGATGCAATGGGAATAGAAAGACAACATTCTAATGaccgtaatataaatgatGAAGATAATTCAATGCATACAATGATGATAACACCTGAACTTTTGGGATTGTTACCAAATTCTTCTAATACAGGAGATGTCAGTGAAGATAGTTCtagtaacaatattaacaaacAATATGGTACAAATAGCGGAAAAGCATGGACAGCTGATGACATGGAAAACGCCTTAGAAGCATTACGTTCACATAATATGTCTTTAACCAAAGCATCCATTACATTTGGGATTCCTTCTACAACATTATGGCAGCGGGCTCATCGAGCTGGTATAGATACTCCTAAAAAAGATGGACCTGCTAAGTCTTGGAATGATGAAGCTTTAAACATTGCATTAGATGCTCTACGCACTGGCACTATTTCGGCAAATAAAGCCAGTAAAGCATATGGTATACCTAGCAGTACGTTATATAAGATTGCGCGGCGGGAAGGAATTAGATTAGCTGCTCCATTCAATGCGGCACCAACTTCTTGGGGTCAAGAACAGTTGGGCCAGGCATTGCATGCCATAAGAACTGGGCAAACGACTGTACAACGAGCTGCAGCCGACTACGGTATACCTTCTGGTACATTATATGGTCGATGTAAACGTGAGAAAATTGAATTGTCTCGTAGCAATCCAACTCCGTGGTCTGAGGATGCTATGATGGAAGCTCTGGAGTCTGTGCGATTAGGTCATATGAGTATTAATCAGGCagctatacattataatctaCCATATTCTTCATTATACGGACGTTTCAAAAGGGTGAAATATGGAGCTGGACATCCAGATGATGATTGTGATGATATGATTGATTCAGATACACAAAGCGAACAACAGCACattcaacaacaacaacaacaacaacagcaacagGCAAATCAGCAAGTACAGGCTACTCCAGTGTCCCAAATAATGTTGGTTCAATATCCAGCACCACAGATTCAAATGTACCAACAACACCCGACTCATTCAACCACTAGTTGA
- Protein Sequence
- MLFFEYFRSTMTVNGQHYCLRWNNYQSNMTSVFHQLLRNESFVDVTLACNESTLKAHKVVLSACSSYFQKLLMDNPCKHPTIILPYDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPEDERDTSIVAEVTPLGPLKSGGRVFTKLQRRTSPYSKKLSPNQIQQDQFNRSYYRIEQSGFAPISVDQENKSINAIHCMTVATSTEDDEKEMKSTLTDLPVVILEPHPSLNLQAQQQSQIVHIPIPPSQQQQQQQQQQQQQQQLSHVTQHTNQPQLQQAAVQTHSQMIITTGPVMTVNEADISPDIQPVGPRATPVPVKNNTSPSSTPTHRDMAVGTSCSNDMMRSGGSERKFESTKFETLRTIDQSSDAMGIERQHSNDRNINDEDNSMHTMMITPELLGLLPNSSNTGDVSEDSSSNNINKQYGTNSGKAWTADDMENALEALRSHNMSLTKASITFGIPSTTLWQRAHRAGIDTPKKDGPAKSWNDEALNIALDALRTGTISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWGQEQLGQALHAIRTGQTTVQRAAADYGIPSGTLYGRCKREKIELSRSNPTPWSEDAMMEALESVRLGHMSINQAAIHYNLPYSSLYGRFKRVKYGAGHPDDDCDDMIDSDTQSEQQHIQQQQQQQQQQANQQVQATPVSQIMLVQYPAPQIQMYQQHPTHSTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00184731;
- 90% Identity
- iTF_01330472;
- 80% Identity
- iTF_00973171;