Mpla010038.2
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- -
- Assembly
- GCA_963662105.1
- Location
- OY759209.1:21576566-21579772[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00079 0.076 14.3 1.1 2 23 21 43 21 43 0.98 2 12 0.00057 0.055 14.8 0.1 1 23 173 196 173 196 0.95 3 12 3.7 3.6e+02 2.8 4.2 2 23 247 269 246 270 0.95 4 12 0.23 22 6.5 1.6 1 23 326 349 326 350 0.90 5 12 0.00091 0.087 14.1 1.0 2 23 400 422 399 422 0.96 6 12 0.028 2.7 9.4 0.2 2 23 511 533 510 533 0.94 7 12 0.0078 0.75 11.2 0.4 1 23 614 637 614 637 0.93 8 12 0.008 0.77 11.1 4.1 2 23 687 709 686 709 0.96 9 12 0.54 52 5.4 0.7 1 23 778 801 778 801 0.91 10 12 0.16 16 7.0 1.4 1 21 853 873 853 874 0.95 11 12 0.0011 0.11 13.8 0.0 2 23 937 959 936 959 0.95 12 12 0.46 44 5.6 2.3 2 23 1009 1031 1008 1031 0.95
Sequence Information
- Coding Sequence
- ATGCATAGTATGGAGAATTTGATGAAACATAAATTTACGCATCTGCCGTACAAGCGCGCAAAATGTAAAATCTGTTTAAAGGAATATAAATATCGACAGGATCTAATGGTTCATCTGCGTATGACACATAAAGATGATTTGCTTGCAATTGCAAAGGCAGTAAGGATAAGCAACGCAAAGCAGCTACAGCAACAAAGACAACAAAAGCAGAAGCGGCAGTCTGTCAATTTCGCAATTAAAAATGTGCAGGAGAATGCAatcgatattttcgaaaatactaATGATGGAATTGAAGTAAAAAGTGAAGCAATAtttgatgacgatgatgatgatgctgcaGATAATGAGCAGCGACAACAGGGACCGACATCCTCAAAAATTGCCCCACCCAATTctgcaaatttatttgaagaatCGCTTAGTCGCAGTTCGTCTCACCTCTCGGAAACTTCGGCACGTCAGCAGCGTCCCagcattataataaaaaatgaagagCTTTGCGAAAAATATATACAGTATATCTGCCCGCAGTGCGGTACAGAGTTTGGAACGCAACCGCAATGGCGTCAGCACATTGAATATGTGCACAATTTTGGTACTCGCACCGGACTCAATTTTAAAGAAGTTAATATGAAGATGCATGCTCAGTGTTTGGAATGCGATAAGATTATTCATGTTAATGTCATACGAAATTTACAAGTACATAAGTTCTCTCATTTGACACATAAATCCTGGCTACGTTGCAAACTCTGCTTTAACACTTTTGTTGGACATAAAGAAATCTCTAAGCATTTGTTGACACAACATCATTTGGGCGATGATAGTGTTGACAATGATGCAAATGATGGAAATAGTCAGGATGCTCGTCAGGACTATGATCTTGATGATGCAGATGACGGCAGTCAAGATGATCAATTGCTGTCAGAATCACGAGGCGAGGATCGTGCACCCGATTCATTTGAGTCATATGTTGATTATTTGTGCCCAGCATGTGGTCATGAATTTCAGGATAAGAAACGTTGGCGTAAACACATTGTACAAGCGCACCATTTAACCGATATGAAAGTGTTGAACTTTCAGGCTATAAATGAACGTCAAGTTATGTGCTTGGAGTGTGAAAAAGTTATAACTAATGCTTATGGTGTACAAAATGCTCAACAGCACAAATTCACACATTTGCCCTATAAATCGTTTGTACGTTGTCGTCTTTGTGCAAAATCGTACACTGATCGAAAAGGTCTGGTTAAGCATTTGCGAAGTAGACATCGTATTGGCGACGGTAATCTGACACATAAAAATTCATCTTCGTTTTCTCAATCATCTCCATATTCGGAGCGCCCGACGCAATCGCAATTTCCCTTGcaaaaagaaattgttaaacATGCTgattttacatttgaaataaaatttttagatgaaGATGATAATGATGACAGCCATCATTTTAATGATACTGATATGTTAGATGATGATACTCCTGTGCCGGAGTTAAGTTTTGGCAATAGCTTTGCTAAGAAAAATTCGAGTGTTAAATGTAGACAATGTAACGCAGTTTTTGATACACAACGTGTTTTGATGTTACATATCAATGATGAACATGAGTTTTTAGATTTCAATAATCTGCGTCCTTTACCAGAAAATCCTCGTTATAGTAGTCAAACTTCACCAATACAGCAACGGTCAGCACCAACGTCCCAACAAATGCGCGAACGTGATCGTCAACGCCGTGCATCTCAAGATGATTTTCTCAACGATGATTCTAATAATGACTTACTTATGCCCACTGGAGATGAAGAAGAAATCAGTTCAAGCTCtcaagaaatagaaaaaaatttctgttacTTATGCCCCAATTGTGGGTTTGAATGTGCTACACAAATGCTCTGGCGCCGTCACATCAATGATGTTCACAATTATGATAAACGTTCGGCGCTCAATTTCCGCCCAATTGATAAATTTCGCTATCAATGCTTGCAGTGTAATGATATCGTTAGTAGCACTAAATTGAAAGGTTTGCAAGACCATAAATTTCGTCATTTAAGTTATAGATTGTATATAAAATGTCTGCTATGCGGCACTTGTTACAACCATAAGCCCAATATGATGAATCATTTACGTCAAAGGCATAACATTATTGATACTCGTTTCTCATACGATGGCTATGAACAATCTATGTCGGATATGGTGCAGTCAAAGGTAATGAATAGGTCTTTGCCATCTTCAGTGAATTCAATTGCAAAATTGCCACAGCAACCAGTACAGCCAAAGCCACCTGCTGGTGAATTTGACTCTTTGAGTTATCATAATGCTGTCGATCATGAATCTATTACATACTTTTGTCCTCAATGCAATGACGGTTTTGCTACGCATGTCTTTTGGCGTAAACATATTGTGGAGCAACATAATTTAAACAGCCGGCAAGGCTTGAATTTCAGACAAATAGATGAGCACCACTACTTGTGTCTGCAGTGCTATAAGCGTGTTACCGTCACCCATACAAAAGGAGCCATTGGTCAGTTACAGTCGCATAAATTTCGTCATTTGCCATTTAAATCCTTCAAGTGCACAGCTTGCAAGGGCGAATTTGTGCGCAAACAAATGTTCTTTAAGCATTTGAATAGGGAAACCAATAAATGTGATGCACTTCCAATTGTAGAAACTGAAGCTAACGTCGACGGTGACGAGGACGGCAATACACTGCCAAAAGAAGAGCAGCCACAGGAAGAAGGGAACCTGcaactgcagcaacaacaggaagaaaattatgaaaataatgaaaaaaatagttttgaagaATGTTACATTTTAATTTGTCCACAATGCGGTTTACAATTCGACACACAGCGTGCATGGCGGGAGCATATAAATAGCGCCCACGATTTTGTCAAACGTGAAACATTAAATATTAAGAGGATCAATTCAAATTTGCACGAATGCTTGCAGTGCGGTGAAACTGTTAATGGCAATAAGTTACGCGATTTACAAATACACAAGTTCAAGCATTTACCATTTGGTGCTTATATACAGTGCAGATATTGTAATGCATCTTATTTTCATATGCGTAATATACAAGATCATTTAAAGCTTAAGCATCGTAATATGCTGGCACAGAAAAGTAATGAAATTTTCGAGGAGATATCTTTTCCTGATGACAATGATACTAATAATTGTGCTATTGAGCCGGACGAACAATATTTATTgggataa
- Protein Sequence
- MHSMENLMKHKFTHLPYKRAKCKICLKEYKYRQDLMVHLRMTHKDDLLAIAKAVRISNAKQLQQQRQQKQKRQSVNFAIKNVQENAIDIFENTNDGIEVKSEAIFDDDDDDAADNEQRQQGPTSSKIAPPNSANLFEESLSRSSSHLSETSARQQRPSIIIKNEELCEKYIQYICPQCGTEFGTQPQWRQHIEYVHNFGTRTGLNFKEVNMKMHAQCLECDKIIHVNVIRNLQVHKFSHLTHKSWLRCKLCFNTFVGHKEISKHLLTQHHLGDDSVDNDANDGNSQDARQDYDLDDADDGSQDDQLLSESRGEDRAPDSFESYVDYLCPACGHEFQDKKRWRKHIVQAHHLTDMKVLNFQAINERQVMCLECEKVITNAYGVQNAQQHKFTHLPYKSFVRCRLCAKSYTDRKGLVKHLRSRHRIGDGNLTHKNSSSFSQSSPYSERPTQSQFPLQKEIVKHADFTFEIKFLDEDDNDDSHHFNDTDMLDDDTPVPELSFGNSFAKKNSSVKCRQCNAVFDTQRVLMLHINDEHEFLDFNNLRPLPENPRYSSQTSPIQQRSAPTSQQMRERDRQRRASQDDFLNDDSNNDLLMPTGDEEEISSSSQEIEKNFCYLCPNCGFECATQMLWRRHINDVHNYDKRSALNFRPIDKFRYQCLQCNDIVSSTKLKGLQDHKFRHLSYRLYIKCLLCGTCYNHKPNMMNHLRQRHNIIDTRFSYDGYEQSMSDMVQSKVMNRSLPSSVNSIAKLPQQPVQPKPPAGEFDSLSYHNAVDHESITYFCPQCNDGFATHVFWRKHIVEQHNLNSRQGLNFRQIDEHHYLCLQCYKRVTVTHTKGAIGQLQSHKFRHLPFKSFKCTACKGEFVRKQMFFKHLNRETNKCDALPIVETEANVDGDEDGNTLPKEEQPQEEGNLQLQQQQEENYENNEKNSFEECYILICPQCGLQFDTQRAWREHINSAHDFVKRETLNIKRINSNLHECLQCGETVNGNKLRDLQIHKFKHLPFGAYIQCRYCNASYFHMRNIQDHLKLKHRNMLAQKSNEIFEEISFPDDNDTNNCAIEPDEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01486756; iTF_00258454;
- 90% Identity
- iTF_01486756;
- 80% Identity
- -