Csim008735.1
Basic Information
- Insect
- Calliopum simillimum
- Gene Symbol
- -
- Assembly
- GCA_951812925.1
- Location
- OX638368.1:48895241-48899032[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.4 6.4e+02 2.4 0.2 1 23 145 168 145 168 0.89 2 13 0.001 0.13 14.1 1.1 2 23 217 239 217 239 0.98 3 13 0.00076 0.091 14.5 0.1 1 23 371 394 371 394 0.95 4 13 2 2.4e+02 3.7 4.3 2 23 445 467 444 468 0.95 5 13 0.11 13 7.8 0.6 1 23 524 547 524 548 0.90 6 13 0.0012 0.14 13.9 1.0 2 23 598 620 597 620 0.96 7 13 0.00074 0.089 14.5 0.5 2 23 710 732 709 732 0.94 8 13 0.01 1.2 10.9 0.4 1 23 813 836 813 836 0.93 9 13 0.013 1.5 10.6 4.3 2 23 886 908 885 908 0.96 10 13 0.62 74 5.3 0.5 1 23 976 999 976 999 0.91 11 13 0.064 7.7 8.4 1.7 1 21 1051 1071 1051 1072 0.95 12 13 0.0015 0.18 13.6 0.0 2 23 1132 1154 1131 1154 0.95 13 13 0.61 74 5.3 2.3 2 23 1204 1226 1203 1226 0.95
Sequence Information
- Coding Sequence
- ATGGATCATTTAGAACCATGGAACATGTTCACTAACGATTTTGTCGCCGAAGAGACGGACGAAATACTCACCGACAATTTAGTTGCGGAGTATGGCGGGCAGGCTGATGGTAAGGATAATGAAGATGAATCTGCTTTGGTAAAAGAAGAGCCTGCTGATATTAGTGATGATAATGGTCACGGTGATGATGATCAATACAACATTAGGAATGAACAACAGAGAACTAATTTCACTTCAACTCGTCCAGACGAAGAATCGAATGACAATGAGTTGTTTGATTTTTCTATTGAACCTCAATCAAACATTGCTATACCACCATTGGAAGACGAAATAACTTCTGGCAGTGATAAAAATCATGTGCACCAACACCAACAGCCGCAGCAGCATCATCAGCAGCAAGAGCAGCAAATTGACTATGATGTTGCTGTTATTTTTGTTTGCCCCGCATGTGGACTTGAAATGGAATCacatgaaaaatggaaaaaacacatAGATTTTGTACACATGTACAATACAAGACGTGGtctaaattttgttcaaattgatAAATTATACCATCAATGTTTAGAATGTAAACGTAAAATTGCTATGCATAGTATggagaatttaatgaaacataaaTTTACGCATCTGCCGTACAAGCGtgcaaaatgcaaaatatgtttaaaggaaTACAAATATCGTCAGGATCTAATGGTTCATCTACGAATGACCCATAAGGATGATTTACTTGCGATTGCCAAGGCAGTGAGGATAAGCAACGTCAAGCAGCTACAGcaacaaagacaacaacaactgcaacagAAGCGGCAGTCTGTCAATTTCGCCATTAAAAATGTGCAAGAAAATGCAAttgatattttcgaaaatactaATGATGGCATTGAAGTGAAGAGTGAAGCAAtatttgatgatgatgatgacgatgctGCAGATAATGGGCAGCGCCAACAAGAGCCAACATCCTCAACTGCTGCTCCGCCCAATTCTACAAATTTATTCGAAGAATCGCTTAGTCGCAGCTCTTCGCACCTCTCAGAAACCTCGGCTCGTCAGCAACGCAACagcattatcttaaaaaatgaagaactttgcgaaaaatACATACAGTATATCTGCCCGCAGTGCGGTACAGAATTTGGTACGCAACCGCAATGGCGCCAACACATTGAATACGTGCACAATTTTGGTACACGCAACGGACtcaattttaaagaagttaATATGAAGATGCATGCCCAATGTTTAGAATGTGACAAGATTATTCATGTTAATGCCATACGGAATTTGCAAGTGCATAAGTTTTCGCATTTAACACATAAATCCTGGTTACGATGCAAACTCTGCTTCAACACCTTTGTAGGGCATAAAGAAATTACTAAGCACTTGTTAACACAACATCATTTGGGCGATGATAGTATTGACAATGATCCAAACGATGGAAATAGCCAGGACGCGCGCCCGGACTATGATATTGATGATGCAGATGACGGCAGTCAAGATGATCAACTGTTGGCAGAATCGCGTGGCGAGGATCGTGCACCCGATTCATTTGAGTCATATGTTGATTACTTGTGCCCTGCATGTGGCCAAGAGTTTCAGGATAAGAAGCGTTGGCGCAAACATATTGTACAAGCGCATCATTTGACCGATATGAAAGTCTTGAACTTTCAGGCTATAAATGAACGTCAAGTTATGTGCTTGGAATGCGAAAAGGTCATAACCAATGCGTATGGTGTACAAAATGCTCAACAACACAAATTCACGCACTTACCCTATAAATCGTTTGTACGTTGCCGCCTTTGTGCAAAATCGTACACTGATCGCAAAGGTCTGGTTAAGCATTTGAGAAGTAGACATCGTATTGGCGACGGTTCACTTACGAATAAGAATGCGTCTTCTTCATTCTCGCAATCATCTCCATATTCGGAGCGTCCAACACAATCACAATTTCCATTGCAAAAAGAAATTGTTAAACATGCCGATTTtacatttgaaataaaatttttggatgaaGATGATGCTGATGACAGCCATCAATTTAATGATACTGATATGTTAGATGATGACACTCCTGTGCCAGAATTAAGTTTTGGCAACAGCTTGTCTAAGAAAACTTCCAGCATTAAGTGTAGACAATGTAACAAAAACTTTGAAACACAACGTGCTTTGATGTTGCATATTAATGATGAGCATGAgtttttggatttcaataatCTGCGCCCATTGGCAGAAAATCCTCGGTTTTCTTATAGTAATCAATCAATGCAGCAACGATCAGCTGCCGCGTCACAACAAATGCGAGATCGTGATCGTCAACGCCGCGCATCTCAAGATGAATTTCTTAACGATGATTCTAATAACGATTTACTTATGCCCACCGGCGATGAAGAAGAAATCAGTTCAAGCTCTCAAGAAAtcgagaaaaatttttgctatttatgcCCTAATTGTGGCTTCGAATGTGCAACTCAAATGCTCTGGCGTCGGCATATTAATGATGTTCACAATTATGATAAACGATCGGCGCTCAATTTCCGCCCAATTGATAAATTTCGCTATCAATGCTTGCAGTGTAGCGATATCGTTAGTAGCACAAAATTGAAAGGTTTACAAGACCACAAGTTTCGTCACTTAAACTATAGATTATACATAAAATGTATGCTATGCGGCACTTGCTACAATCATAAACCCAATATGATGAATCATTTACGTCAGAGGCATAACATAATTGATACACGTTTCTCATATGATGGCTATGAACAAACTATGCAAGATATGGTACAGTCAAAGACAATGAGTAGGTCTTTGCCGTCATCCTCGAATTCGGCGAAATTGCCGCAGCAACCAGTACAGCCAAAGCCACCTGCTGGTGAATTTGACTCTTTGAGTTATCATAATGCTGTCGATCATGAATCTATAACATACTTTTGTCCTCAATGCAACGATGGTTTTGCTACACATGTCTTTTGGCGAAAACACATTGTGGAAGAACACAATTTGAATAGCCGACAAGGCTTGAATTTCAGGCAAATCGATGAACATCATTACTTGTGTCTGCAGTGTTATAAGCGTGTGACCGTCACACATACAAAAGGAGCCATTGGTCAGTTACAATCGCATAAATTTCGCCATTTGCCATTCAAATCCTTCAAGTGCACATCTTGCAATGGTGAATTTGTACGTAAACAAATGTTCTTTAAACATTTGAATAGGGCGACAAATAAATGTGATGCACTTCCAATTGTAGAACCTGAAGGTGACGCCGACGAAGCCGGCAATACACTGCCAAACGAAGAGCAAGAGCAACAGGAAGAAAGGGAACAGCAAGAACAAAAGGAAGAAAGTTTTGAAAGCAATGAAAGGAATAATTTTGAAGAAtgttatattttaatttgtcCACAATGCGGTTTACAATTTGATACACAGCGTGCATGGCGTGAGCATATAAATAGCGCTCACGATTTTGTCAAACGcgaaacattaaacattaagagaattaattcaaatttacaTGAATGCTTGCAGTGCGGTGAAACTGTTAATGGTAATAAATTACGCGATTTGCAAATACACAAGTTCAAGCATTTACCATTTGGCGCTTACATACAGTGCAGATATTGTAATGCTTCTTATTTTCATATGCGTAATATACAAGATCATTTAAAGCTTAAGCATCGTAATATGTTGGCACAGAAAAATAATGAAGTCTTCGAAGAGATATCTTTTCCTGATGATAATGATACTAATAATTGTGCTATTGAGCCGGAAGAACAATATTTATTgggataa
- Protein Sequence
- MDHLEPWNMFTNDFVAEETDEILTDNLVAEYGGQADGKDNEDESALVKEEPADISDDNGHGDDDQYNIRNEQQRTNFTSTRPDEESNDNELFDFSIEPQSNIAIPPLEDEITSGSDKNHVHQHQQPQQHHQQQEQQIDYDVAVIFVCPACGLEMESHEKWKKHIDFVHMYNTRRGLNFVQIDKLYHQCLECKRKIAMHSMENLMKHKFTHLPYKRAKCKICLKEYKYRQDLMVHLRMTHKDDLLAIAKAVRISNVKQLQQQRQQQLQQKRQSVNFAIKNVQENAIDIFENTNDGIEVKSEAIFDDDDDDAADNGQRQQEPTSSTAAPPNSTNLFEESLSRSSSHLSETSARQQRNSIILKNEELCEKYIQYICPQCGTEFGTQPQWRQHIEYVHNFGTRNGLNFKEVNMKMHAQCLECDKIIHVNAIRNLQVHKFSHLTHKSWLRCKLCFNTFVGHKEITKHLLTQHHLGDDSIDNDPNDGNSQDARPDYDIDDADDGSQDDQLLAESRGEDRAPDSFESYVDYLCPACGQEFQDKKRWRKHIVQAHHLTDMKVLNFQAINERQVMCLECEKVITNAYGVQNAQQHKFTHLPYKSFVRCRLCAKSYTDRKGLVKHLRSRHRIGDGSLTNKNASSSFSQSSPYSERPTQSQFPLQKEIVKHADFTFEIKFLDEDDADDSHQFNDTDMLDDDTPVPELSFGNSLSKKTSSIKCRQCNKNFETQRALMLHINDEHEFLDFNNLRPLAENPRFSYSNQSMQQRSAAASQQMRDRDRQRRASQDEFLNDDSNNDLLMPTGDEEEISSSSQEIEKNFCYLCPNCGFECATQMLWRRHINDVHNYDKRSALNFRPIDKFRYQCLQCSDIVSSTKLKGLQDHKFRHLNYRLYIKCMLCGTCYNHKPNMMNHLRQRHNIIDTRFSYDGYEQTMQDMVQSKTMSRSLPSSSNSAKLPQQPVQPKPPAGEFDSLSYHNAVDHESITYFCPQCNDGFATHVFWRKHIVEEHNLNSRQGLNFRQIDEHHYLCLQCYKRVTVTHTKGAIGQLQSHKFRHLPFKSFKCTSCNGEFVRKQMFFKHLNRATNKCDALPIVEPEGDADEAGNTLPNEEQEQQEEREQQEQKEESFESNERNNFEECYILICPQCGLQFDTQRAWREHINSAHDFVKRETLNIKRINSNLHECLQCGETVNGNKLRDLQIHKFKHLPFGAYIQCRYCNASYFHMRNIQDHLKLKHRNMLAQKNNEVFEEISFPDDNDTNNCAIEPEEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00972649;
- 90% Identity
- -
- 80% Identity
- -