Mpla009068.1
Basic Information
- Insect
- Meiosimyza platycephala
- Gene Symbol
- -
- Assembly
- GCA_963662105.1
- Location
- OY759209.1:3738614-3749426[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 1.4 1.3e+02 4.1 3.9 1 23 305 328 305 328 0.94 2 19 2.2 2.1e+02 3.5 6.0 1 20 336 355 336 356 0.94 3 19 0.23 22 6.6 0.2 2 23 367 389 366 389 0.94 4 19 0.0058 0.55 11.6 2.0 2 21 405 424 404 426 0.93 5 19 1.4e-06 0.00014 22.9 1.4 1 23 433 455 433 455 0.98 6 19 5.9 5.6e+02 2.1 1.9 2 23 495 516 494 516 0.82 7 19 0.00012 0.012 16.9 3.1 1 23 598 621 598 621 0.96 8 19 2.3e-05 0.0022 19.1 0.5 1 23 637 659 637 659 0.98 9 19 3.8e-05 0.0037 18.4 1.8 1 23 666 688 666 688 0.99 10 19 0.026 2.5 9.5 0.1 3 21 716 734 714 735 0.93 11 19 0.34 33 6.0 0.6 1 23 795 818 795 818 0.92 12 19 8.4 8.1e+02 1.6 0.8 2 22 826 846 826 846 0.94 13 19 0.87 83 4.7 2.4 1 21 855 875 855 878 0.94 14 19 0.0013 0.13 13.6 5.9 1 23 901 924 901 924 0.98 15 19 7.2e-05 0.0069 17.6 0.7 2 23 955 976 954 976 0.95 16 19 0.00027 0.026 15.8 3.1 1 23 982 1004 982 1004 0.99 17 19 2.7e-07 2.6e-05 25.2 3.3 1 23 1010 1032 1010 1032 0.98 18 19 2.3e-07 2.2e-05 25.4 2.4 1 23 1038 1060 1038 1060 0.99 19 19 0.0015 0.15 13.4 0.1 1 22 1066 1087 1066 1090 0.90
Sequence Information
- Coding Sequence
- ATGGAAACCGATCCATACTTCcgaaatttaaatgtaaaatctATTTGTCGTACTTGCTCCCACACAAGCGAAGAATTATATCCTCTGTATGAAAGCACAGACCGATTTCCTCTGAAGACGCTCTCTGATCTTTTATTGGATATTGCCAAAATAGATACAAAGTCGCATTCAAATGAAGAAATTATGCCAATGAATCTGTGCAGCACTTGCTCACGAAAGCTACAAAATGCATACTCGTTTGTGCTTCAGGCTCAggaaaccaataaaaaatttgtgaagtGCATCAACACTGCAGTAACTGAACTTGAGGATGGTACGACAGTTAGTAAATATTTAGACTGCCTCTTGGAATCTCCAATAGATATGCCTTCCAATACAGTGGAATATATGCATATCAAATTGGAACCCTACAATACAGAAGAAAGTTTGTTTGGCTCATTTCCATTGTCAGACGAAGTCAATGATCACTATGAGGCAGATGAACCTGAAGCGGACGCTGACAGAATGCTGTATAATGTTGATGGCCGTGAGACTGCTCATGTAAATTCAAACTCCAAGCCATGGAATATTTACGCAAAACAAGAGGGTTTAATCACGGAAAGCAAAATTCATCTCTTGAGCAGTGTTGAAAATGAAGAGAAAGTTATAGTGGATCCCATAACAGTTTCATCTACTGAAAATAAGCACGTTAGTGCAATCTGTGATTCTAGCGATGGTGAATGGAAAGAAAAGCCAAAAAAGCGTCCTGGGCGCCCTCGGCTTGCTCAAAATAAACCAGATTGCAGAGGACGTTTCTCATGTGAAGAGTGCGTTGATGAGAGTGGCAATGAGCTGGACCTTAACGATTCCGAAACAGAAACTGATGAAATTTCTGAGCACACTAAAAATGAAGCAAAGCTGAAACGGGTAGTTTATAAATGTGAGGTTTGTTTACAAGAGTGCTTTCGACGTAAACACATGTTGTTACATCAGAATGCTGAACATAATCACATGAAACAACTTCCACATTGTTGTGAGAACTGCAATAAACAATTTGTTTGCCGCGAACTATTGCAGCGTCATCAAAGTTGCGATTGTATGAACGCACACAAAAAATGGAAATGCAACAAGTGCTCATCATCTTTTGTATGGGAAGTCAATTTAAAAGCTCATGAAAATGTAAAGCATATTAATCCAGAGCAAGATACAAGTCGAAAATTTGCTAATAAGCTGCAATGTGACGAGTgtgataaaacttttatttggccGAAGGACTTAAATCGGCATAAACGTTGTCATTTACCCGATGATGAGAAATTTGAGTGCCCATTCTGCACACGGCGATTTAACAGAAAAGATAATATGCAGGCACATATGAAAATACACGGAACAGTAACAAATCACATAGCAAATTCTAGAAGGGACGTGAATAAAACTGGCAAGTATACTAAAGTTAAAGCTCTTGATGATAATTATTGCAAGCCCAATGGTTGCAAACTAATTCAGTGCATGATTTGTTATTCAAAACATACCAAAATCGCTGATTTACGCACTCATTTGCGTACTCATCAATATGTAGTTTCTTTTAATCAACATGGGCGTAAAAACATATCGGAGATATCTTTGCAGTTGTATCCTGGAGAGCCATTTATGGCGGAGAAGGATTTGATTGATCGCATTATAACGGATGTAACTGAACAGCGCTTAGATCGCTTTTATTCTATTACGAATGAAGTTGGTTATGAGTTAAATATCAGTGATTCTGAAACCGAGAGCGACTCAGAAGAAGAAGAGGAGACAATTCGCAAATGTTACTCCTGTGATTTGTGTGGGAACACTTTTCGGAGAAAGTATAAATTGTTCGAGCACCAAAGATTTTCTCATGATTGGATTGAAGTGCCATATGTTTGTGAGTTAAATTCAAACATTTATGAGTGTCAAGTCTGTCAACGCGTTTTCTCCTGGCAAAAAGACTTAACGAGACATATGAATGTACATCAACCAGAGACTAAAGTGTTTAAATGCCTTTGGTGCCCACGAAAATTTTATCGTAAAGACAGTTTATATGTTCACATAAAGCGGCATGGTGTAGCTCCGGAATGTTTAGCGGCGGTTGAAGGCCATATTAATGCTAGTAGTGGACCAAATGGGAAGAAAGATATTATATGTAAAGTTTGCAATTTGCAGTTTTCAAGCATTTTTGCATTACGAACCCACATAATGCAAAGTACTTTTGATGTCGACATATCTAATAACATACCACTTAAATTAGAACATCATAGCCACAGTTCGCTGTTGAACTATTCTATAACGAATCACCTCGGATTTGAGTTGCATATAGATGATTCAGAATCAGATGATGAGGATGTAATCATGCCCAAACCAGAGCGAGCTGCCTTGAAATACTTGTGCGAGCTTTGTAATGTAGAAACTTTCCGCAAATTCCAAATGTCAAATCATCAACGAGCAGCTCACCAGTATGAAGAACTTCCGAGAAAATGTGACAAATGTTTGTTTAAGACAGTTTCTAAGGATATTCTTGCACATCATATGCAGACACAATGCTATaacttggaaaaaaaatttgaatgcaatACGTGCTCATTTAAGTTTATGTGGGAAGAAAATCTAAATAGACATATTCAGTGTATGCATCCAAtagaaaatttatcaatattagAGCAATCGTCAACATTTTGTGAAAGCGAATCTAACAAATCATTCCAAtgcgaaaaatgtaaatgtaaatataaCAGAAAAGATCGCTTAACTGCCCATATGAAAAAATCACATCCAGAGGATGATGGCCAGTCCACAAATAGTTCGCAAATAGATAGTACTCCtggaaaaacgtcaaaaaaatctCCATtggacaaaaagtttttatgtgcaTTTTGTGGTCATGCTGTAACGTCGTCGTCGAATCTCATCATACATATGCGTCGTCATACTGGCGAAAAGCCTTTTAAGTGTGATTTTTGTGATATGGCGTTTCCACGTTCATCTGATTTACAGTGTCACCGTCGCACCCATACGGGCGAAAAGCCGCACAAGTGTTCTGTTTGTGACAAAGCTTTTTCCCGGTCTTATAAATTGCAGACGCACATGCGGATCCATTCTGGCGAGCGACCTTACAAATGTACATATTGTGAAAAAAGCTTTACGCAATCGAATGACTTGACATTGCACATCCGACGACACACTGGCGAAAGACCATACGTTTGCGGTATTTGTGGAGAGCGGTTTATACAGGGTACTGCGCTTAAGAATCATCGTACTATGCGAGGACATTATGAAGATAATGGACCGAGGAAATTGACGTACTTAGTGCTTGACGATAATGGAAATCCAGATACTCAATGGAGGAACAGTACCAAAGATGAAGCCCCATATATGGATTTCACTAAAACAGCAGCACAACAATGGATTGCAAATCGCTTAAAGCGTCTTCAAAACGAAGATGGTGTTGACAGCTTTAAGTTCGATACTGGTGAAACCAGTTGGGTACCAGATGATCCCGTACTTCAAGCACCCCTAAATATTAGTCCAAATCAGATCACCAGTGAATATGTTCGTACTGTTGGAGCTTTTGAATCCATGGTTGAGGTTCGAACTGGACAGGGAACACAGGATTTACCTATATTTGTGCGCATGATTGACAAAGATTCAGAATGGAATTGTAATAATGGTTTGGTTACACTCATAACAACATTGCTGCAAATGAATACGAACGGCTATCATTTCGTATTACCTGACACAAATGGAGGAAATGGGTGCAATAATAAGCCGCCTGCAAAGGAGTTTTTTTTACGTTGGTTGCAAGCTAACGATTTCATGCCCACGTGGCACCTCTTTAAATTCACTGGGCCTGAGGCAATTCGTCAAATCTACGAGGAAGCCTTGCCAGAACTGACTGGGCATCGTAACGCTGTTAATCTCATCCATGGTGATGACTTAAATCCACCTCACCAGAGTCAGCAAGAACTGAACTTACTTTCCTGGAAACAATGGGCACGTTTTCGCCCGAACAGATAA
- Protein Sequence
- METDPYFRNLNVKSICRTCSHTSEELYPLYESTDRFPLKTLSDLLLDIAKIDTKSHSNEEIMPMNLCSTCSRKLQNAYSFVLQAQETNKKFVKCINTAVTELEDGTTVSKYLDCLLESPIDMPSNTVEYMHIKLEPYNTEESLFGSFPLSDEVNDHYEADEPEADADRMLYNVDGRETAHVNSNSKPWNIYAKQEGLITESKIHLLSSVENEEKVIVDPITVSSTENKHVSAICDSSDGEWKEKPKKRPGRPRLAQNKPDCRGRFSCEECVDESGNELDLNDSETETDEISEHTKNEAKLKRVVYKCEVCLQECFRRKHMLLHQNAEHNHMKQLPHCCENCNKQFVCRELLQRHQSCDCMNAHKKWKCNKCSSSFVWEVNLKAHENVKHINPEQDTSRKFANKLQCDECDKTFIWPKDLNRHKRCHLPDDEKFECPFCTRRFNRKDNMQAHMKIHGTVTNHIANSRRDVNKTGKYTKVKALDDNYCKPNGCKLIQCMICYSKHTKIADLRTHLRTHQYVVSFNQHGRKNISEISLQLYPGEPFMAEKDLIDRIITDVTEQRLDRFYSITNEVGYELNISDSETESDSEEEEETIRKCYSCDLCGNTFRRKYKLFEHQRFSHDWIEVPYVCELNSNIYECQVCQRVFSWQKDLTRHMNVHQPETKVFKCLWCPRKFYRKDSLYVHIKRHGVAPECLAAVEGHINASSGPNGKKDIICKVCNLQFSSIFALRTHIMQSTFDVDISNNIPLKLEHHSHSSLLNYSITNHLGFELHIDDSESDDEDVIMPKPERAALKYLCELCNVETFRKFQMSNHQRAAHQYEELPRKCDKCLFKTVSKDILAHHMQTQCYNLEKKFECNTCSFKFMWEENLNRHIQCMHPIENLSILEQSSTFCESESNKSFQCEKCKCKYNRKDRLTAHMKKSHPEDDGQSTNSSQIDSTPGKTSKKSPLDKKFLCAFCGHAVTSSSNLIIHMRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGEKPHKCSVCDKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYVCGICGERFIQGTALKNHRTMRGHYEDNGPRKLTYLVLDDNGNPDTQWRNSTKDEAPYMDFTKTAAQQWIANRLKRLQNEDGVDSFKFDTGETSWVPDDPVLQAPLNISPNQITSEYVRTVGAFESMVEVRTGQGTQDLPIFVRMIDKDSEWNCNNGLVTLITTLLQMNTNGYHFVLPDTNGGNGCNNKPPAKEFFLRWLQANDFMPTWHLFKFTGPEAIRQIYEEALPELTGHRNAVNLIHGDDLNPPHQSQQELNLLSWKQWARFRPNR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01486507;
- 90% Identity
- iTF_00972419;
- 80% Identity
- -