Basic Information

Insect: Meiosimyza platycephala
Gene Symbol: -
Assembly: GCA_963662105.1
Location: OY759209.1:156025-162687[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 19 1.1 1.1e+02 4.4 3.9 1 23 96 119 96 119 0.94

2 19 1.8 1.7e+02 3.7 6.0 1 20 127 146 127 147 0.94

3 19 0.065 6.3 8.3 0.3 2 23 158 180 157 180 0.95

4 19 0.0048 0.46 11.9 2.0 2 21 196 215 195 217 0.93

5 19 1.2e-06 0.00011 23.2 1.4 1 23 224 246 224 246 0.98

6 19 4.9 4.7e+02 2.4 1.9 2 23 286 307 285 307 0.82

7 19 0.0001 0.0096 17.1 3.1 1 23 389 412 389 412 0.96

8 19 1.9e-05 0.0018 19.4 0.5 1 23 428 450 428 450 0.98

9 19 3.2e-05 0.003 18.7 1.8 1 23 457 479 457 479 0.99

10 19 0.021 2.1 9.8 0.1 3 21 507 525 505 526 0.93

11 19 0.28 27 6.3 0.6 1 23 586 609 586 609 0.92

12 19 7 6.7e+02 1.9 0.8 2 22 617 637 617 637 0.94

13 19 0.72 69 5.0 2.4 1 21 646 666 646 669 0.94

14 19 0.0011 0.11 13.9 5.9 1 23 692 715 692 715 0.98

15 19 6e-05 0.0057 17.8 0.7 2 23 746 767 745 767 0.95

16 19 0.00022 0.021 16.0 3.1 1 23 773 795 773 795 0.99

17 19 2.2e-07 2.1e-05 25.5 3.3 1 23 801 823 801 823 0.98

18 19 1.9e-07 1.8e-05 25.7 2.4 1 23 829 851 829 851 0.99

19 19 0.0013 0.12 13.7 0.1 1 22 857 878 857 881 0.90

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	19	1.1	1.1e+02	4.4	3.9	1	23	96	119	96	119	0.94
2	19	1.8	1.7e+02	3.7	6.0	1	20	127	146	127	147	0.94
3	19	0.065	6.3	8.3	0.3	2	23	158	180	157	180	0.95
4	19	0.0048	0.46	11.9	2.0	2	21	196	215	195	217	0.93
5	19	1.2e-06	0.00011	23.2	1.4	1	23	224	246	224	246	0.98
6	19	4.9	4.7e+02	2.4	1.9	2	23	286	307	285	307	0.82
7	19	0.0001	0.0096	17.1	3.1	1	23	389	412	389	412	0.96
8	19	1.9e-05	0.0018	19.4	0.5	1	23	428	450	428	450	0.98
9	19	3.2e-05	0.003	18.7	1.8	1	23	457	479	457	479	0.99
10	19	0.021	2.1	9.8	0.1	3	21	507	525	505	526	0.93
11	19	0.28	27	6.3	0.6	1	23	586	609	586	609	0.92
12	19	7	6.7e+02	1.9	0.8	2	22	617	637	617	637	0.94
13	19	0.72	69	5.0	2.4	1	21	646	666	646	669	0.94
14	19	0.0011	0.11	13.9	5.9	1	23	692	715	692	715	0.98
15	19	6e-05	0.0057	17.8	0.7	2	23	746	767	745	767	0.95
16	19	0.00022	0.021	16.0	3.1	1	23	773	795	773	795	0.99
17	19	2.2e-07	2.1e-05	25.5	3.3	1	23	801	823	801	823	0.98
18	19	1.9e-07	1.8e-05	25.7	2.4	1	23	829	851	829	851	0.99
19	19	0.0013	0.12	13.7	0.1	1	22	857	878	857	881	0.90

Sequence Information

Coding Sequence: atgtcGCAGCTAAGAGCACATTTACCGATGCATTCAGATGGTTTTACAGCCATTGACATAGAAAAgggaatttttttcaaaacacgCAATCACGATTTTTCCAATGCTGGAAAAGATTCTAAAATTGTACACTTAATTGCAAGTAATTTTTTACTCGGAAATACATCCCAATTTTACTCAGGCGTTGATGAGAGTGGCAATGAGCTGGACCTTAACGATTCCGAAACAGAAACTGATGAAATTTCTGAGCACACTAAAAATGAAGCAAAGCTGAAACGGGTAGTTTATAAATGTGAGGTTTGTTTACAAGAGTGCTTTCGACGTAAACACATGTTGTTACATCAGAATGCTGAACATAATCACATGAAACAACTTCCACATTGTTGTGAGAACTGCAATAAACAATTTGTTTGCCGCGAACTATTGCAGCGTCATCAAAGTTGCGATTGTATGAACGCACACAAAAAATGGAAATGCAACAAGTGCTCATCATCTTTTGTATGGGAAGACAATTTAAAAGCTCATGAAAATGTAAAGCATATTAATCCAGAGCAAGATACAAGTCGAAAATTTGCTAATAAGCTGCAATGTGACGAGTgtgataaaacttttatttggccGAAGGACTTAAATCGGCATAAACGTTGTCATTTACCCGATGATGAGAAATTTGAGTGCCCATTCTGCACACGGCGATTTAACAGAAAAGATAATATGCAGGCACATATGAAAATACACGGAACAGTAACAAATCACATAGCAAATTCTAGAAGGGACGTGAATAAAACTGGCAAGTATACTAAAGTTAAAGCTCTTGATGATAATTATTGCAAGCCCAATGGTTGCAAACTAATTCAGTGCATGATTTGTTATTCAAAACATACCAAAATCGCTGATTTACGCACTCATTTGCGTACTCATCAATATGTAGTTTCTTTTAATCAACATGGGCGTAAAAACATATCGGAGATATCTTTGCAGTTGTATCCTGGAGAGCCATTTATGGCGGAGAAGGATTTGATTGATCGCATTATAACGGATGTAACTGAACAGCGCTTAGATCGCTTTTATTCTATTACGAATGAAGTTGGTTATGAGTTAAATATCAGTGATTCTGAAACCGAGAGCGACTCAGAAGAAGAAGAGGAGACAATTCGCAAATGTTACTCCTGTGATTTGTGTGGGAACACTTTTCGGAGAAAGTATAAATTGTTCGAGCACCAAAGATTTTCTCATGATTGGATTGAAGTGCCATATGTTTGTGAGTTAAATTCAAACATTTATGAGTGTCAAGTCTGTCAACGCGTTTTCTCCTGGCAAAAAGACTTAACGAGACATATGAATGTACATCAACCAGAGACTAAAGTGTTTAAATGCCTTTGGTGCCCACGAAAATTTTATCGTAAAGACAGTTTATATGTTCACATAAAGCGGCATGGTGTAGCTCCGGAATGTTTAGCGGCGGTTGAAGGCCATATTAATGCTAGTAGTGGACCAAATGGGAAGAAAGATATTATATGTAAAGTTTGCAATTTGCAGTTTTCAAGCATTTTTGCATTACGAACCCACATAATGCAAAGTACTTTTGATGTCGACATATCTAATAACATACCACTTAAATTAGAACATCATAGCCACAGTTCGCTGTTGAACTATTCTATAACGAATCACCTCGGATTTGAGTTGCATATAGATGATTCAGAATCAGATGATGAGGATGTAATCATGCCCAAACCAGAGCGAGCTGCCTTGAAATACTTGTGCGAGCTTTGTAATGTAGAAACTTTCCGCAAATTCCAAATGTCAAATCATCAACGAGCAGCTCACCAGTATGAAGAACTTCCGAGAAAATGTGACAAATGTTTGTTTAAGACAGTTTCTAAGGATATTCTTGCACATCATATGCAGACACAATGCTATaacttggaaaaaaaatttgaatgcaatACGTGCTCATTTAAGTTTATGTGGGAAGAAAATCTAAATAGACATATTCAGTGTATGCATCCAAtagaaaatttatcaatattagAGCAATCGTCAACATTTTGTGAAAGCGAATCTAACAAATCATTCCAAtgcgaaaaatgtaaatgtaaatataaCAGAAAAGATCGCTTAACTGCCCATATGAAAAAATCACATCCAGAGGATGATGGCCAGTCCACAAATAGTTCGCAAATAGATAGTACTCCtggaaaaacgtcaaaaaaatctCCATtggacaaaaagtttttatgtgcaTTTTGTGGTCATGCTGTAACGTCGTCGTCGAATCTCATCATACATATGCGTCGTCATACTGGCGAAAAGCCTTTTAAGTGTGATTTTTGTGATATGGCGTTTCCACGTTCATCTGATTTACAGTGTCACCGTCGCACCCATACGGGCGAAAAGCCGCACAAGTGTTCTGTTTGTGACAAAGCTTTTTCCCGGTCTTATAAATTGCAGACGCACATGCGGATCCATTCTGGCGAGCGACCTTACAAATGTACATATTGTGAAAAAAGCTTTACGCAATCGAATGACTTGACATTGCACATCCGACGACACACTGGCGAAAGACCATACGTTTGCGGTATTTGTGGAGAGCGGTTTATACAGGGTACTGCGCTTAAGAATCATCGTACTATGCGAGGACATTATGAAGATAATGGACCGAGGAAATTGACGTACTTAGTGCTTGACGATAATGGAAATCCAGATACTCAATGGAGGAACAGTACCAAAGATGAAGCCCCATATATGGATTTCACTAAAACAGCAGCACAACAATGGATTGCAAATCGCTTAAAGCGTCTTCAAAACGAAGATGGTGTTGACAGCTTTAAGTTCGATACTGGTGAAACCAGTTGGGTACCAGATGATCCCGTACTTCAAGCACCCCTAAATATTAGTCCAAATCAGATCACCAGTGAATATGTTCGTACTGTTGGAGCTTTTGAATCCATGGTTGAGGTTCGAACTGGACAGGGAACACAGGATTTACCTATATTTGTGCGCATGATTGACAAAGATTCAGAATGGAATTGTAATAATGGTTTGGTTACACTCATAACAACATTGCTGCAAATGAATACGAACGGCTATCATTTCGTATTACCTGACACAAATGGAGGAAATGGGTGCAATAATAAGCCGCCTGCAAAGGAGTTTTTTTTACGTTGGTTGCAAGCTAACGATTTCATGCCCACGTGGCACCTCTTTAAATTCACTGGGCCTGAGGCAATTCGTCAAATCTACGAGGAAGCCTTGCCAGAACTGACTGGGCACCGTAACGCTGTTAATCTCATCCATGGTGATGACTTAAATCCACCTCACCAGAGTCAGCAAGAACTGAACTTACTTTCCTGGAAACAATGGGCACGTTTTCGCCCGAACAGATAA
Protein Sequence: MSQLRAHLPMHSDGFTAIDIEKGIFFKTRNHDFSNAGKDSKIVHLIASNFLLGNTSQFYSGVDESGNELDLNDSETETDEISEHTKNEAKLKRVVYKCEVCLQECFRRKHMLLHQNAEHNHMKQLPHCCENCNKQFVCRELLQRHQSCDCMNAHKKWKCNKCSSSFVWEDNLKAHENVKHINPEQDTSRKFANKLQCDECDKTFIWPKDLNRHKRCHLPDDEKFECPFCTRRFNRKDNMQAHMKIHGTVTNHIANSRRDVNKTGKYTKVKALDDNYCKPNGCKLIQCMICYSKHTKIADLRTHLRTHQYVVSFNQHGRKNISEISLQLYPGEPFMAEKDLIDRIITDVTEQRLDRFYSITNEVGYELNISDSETESDSEEEEETIRKCYSCDLCGNTFRRKYKLFEHQRFSHDWIEVPYVCELNSNIYECQVCQRVFSWQKDLTRHMNVHQPETKVFKCLWCPRKFYRKDSLYVHIKRHGVAPECLAAVEGHINASSGPNGKKDIICKVCNLQFSSIFALRTHIMQSTFDVDISNNIPLKLEHHSHSSLLNYSITNHLGFELHIDDSESDDEDVIMPKPERAALKYLCELCNVETFRKFQMSNHQRAAHQYEELPRKCDKCLFKTVSKDILAHHMQTQCYNLEKKFECNTCSFKFMWEENLNRHIQCMHPIENLSILEQSSTFCESESNKSFQCEKCKCKYNRKDRLTAHMKKSHPEDDGQSTNSSQIDSTPGKTSKKSPLDKKFLCAFCGHAVTSSSNLIIHMRRHTGEKPFKCDFCDMAFPRSSDLQCHRRTHTGEKPHKCSVCDKAFSRSYKLQTHMRIHSGERPYKCTYCEKSFTQSNDLTLHIRRHTGERPYVCGICGERFIQGTALKNHRTMRGHYEDNGPRKLTYLVLDDNGNPDTQWRNSTKDEAPYMDFTKTAAQQWIANRLKRLQNEDGVDSFKFDTGETSWVPDDPVLQAPLNISPNQITSEYVRTVGAFESMVEVRTGQGTQDLPIFVRMIDKDSEWNCNNGLVTLITTLLQMNTNGYHFVLPDTNGGNGCNNKPPAKEFFLRWLQANDFMPTWHLFKFTGPEAIRQIYEEALPELTGHRNAVNLIHGDDLNPPHQSQQELNLLSWKQWARFRPNR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01486507;
90% Identity: iTF_00972427;
80% Identity: -