Basic Information

Insect: Meiosimyza platycephala
Gene Symbol: -
Assembly: GCA_963662105.1
Location: OY759208.1:34622224-34625266[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0034 0.32 12.3 0.3 1 23 115 138 115 138 0.94

2 12 0.00073 0.07 14.4 0.4 2 23 144 166 143 166 0.94

3 12 9.7e-05 0.0093 17.2 2.6 2 23 176 198 175 198 0.93

4 12 1.8e-05 0.0018 19.4 2.6 2 23 375 396 374 396 0.97

5 12 0.0012 0.12 13.7 2.2 2 23 409 431 408 431 0.94

6 12 4.7e-06 0.00045 21.3 1.6 1 23 436 458 436 458 0.98

7 12 4.4e-05 0.0042 18.2 0.2 1 22 463 484 463 487 0.91

8 12 0.002 0.19 13.0 1.3 3 23 493 513 492 513 0.99

9 12 0.00017 0.016 16.4 1.5 1 23 519 541 519 541 0.98

10 12 9e-07 8.6e-05 23.6 2.6 1 23 547 569 547 569 0.96

11 12 5.8e-07 5.6e-05 24.2 3.8 1 23 575 597 575 597 0.99

12 12 2.8 2.7e+02 3.1 0.1 1 23 602 625 602 625 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0034	0.32	12.3	0.3	1	23	115	138	115	138	0.94
2	12	0.00073	0.07	14.4	0.4	2	23	144	166	143	166	0.94
3	12	9.7e-05	0.0093	17.2	2.6	2	23	176	198	175	198	0.93
4	12	1.8e-05	0.0018	19.4	2.6	2	23	375	396	374	396	0.97
5	12	0.0012	0.12	13.7	2.2	2	23	409	431	408	431	0.94
6	12	4.7e-06	0.00045	21.3	1.6	1	23	436	458	436	458	0.98
7	12	4.4e-05	0.0042	18.2	0.2	1	22	463	484	463	487	0.91
8	12	0.002	0.19	13.0	1.3	3	23	493	513	492	513	0.99
9	12	0.00017	0.016	16.4	1.5	1	23	519	541	519	541	0.98
10	12	9e-07	8.6e-05	23.6	2.6	1	23	547	569	547	569	0.96
11	12	5.8e-07	5.6e-05	24.2	3.8	1	23	575	597	575	597	0.99
12	12	2.8	2.7e+02	3.1	0.1	1	23	602	625	602	625	0.89

Sequence Information

Coding Sequence: ATGGAAAAGGTTTGCCGTGTTTGCATGAAAAGTGACTTggaattgtttttaatatttgatgaaaaatatgCAGTGGACAGAACTAGTCTGGCAGAGATTCTTTCGGAATGTACAATATACAAAGTCCAACGCTACGATGAGTTGCCACACCAAATTTGCATCACCTGCATGGAATGGGCTAAAAATGCTTTCAGTTTCAAACGAAGTTGCGAACAATCATACCGGGTGCTCATTGGCATGTTGGATGAAGACAGCTACCGGAAAAGAGATCCGCCAAATCAAATCAAGGAAGAAACGGATTTGTACGCGGTGAAAAGTACACAAACAGAGGACACCACCATGTATCCATGTGAACGATGCGAGGAAAAATTCTTTACATTCGATGCATTACGGGCTCATCGTGAAAACGATCACAAGGGCAGTGCAATTGTGTGTCGGTTTTGCTCTAAAACTTTCAATCGTATTGGCTATTTACGATCACATATCGCTGTATTTCATCCAGAATCAGGCTATACATCTCATAATCAGTGTAACATATGTAAAAGACAATTTACGAGACGTGAACATATGCGTCGTCATTTAGCGCTAATACATAAAATCGTAGAAATGCCAGATGCAACTGATTTGGGCGACGAAGCGAAAGAGGAAGATGAATCTTTTAAAAATGAGACGTTAGAACTTACAGAGGACATTGAAGATATTTCTAATCAAAGTGAGAAAAAGTTGCAACTACAGACTGAGGAagatcaaaatatttctttggctgtgccaatttcaaatcaaactgatagcgatgaaaatgaaattgaagaCACATCATTTGATGTTAGAGAAACGATATCAAGTGATGAGGAAGATGAAAAACCATTGGCAGACTTTATAACAAGATCACGTAAAGACTTTGCAGAAGttttagtcCAAGAAGATCAACCTGCTGTCAATGAAATGTGTGCATTCGAAGAATATCTTTTAAACAATGTCAAAATAGAAGTTGCTTCTGCTTCATCTGCCCAGTTATTAGAAGCTACATATACTGGCAACGATgtggaaaaaaatgaaatgtacCACGCTCTTTCAAAAACAAATGAACAAAATTGcacagaaagaaaaacaaatggtAACAAATGTGAGCACTGCGATAAAAGTTTTCAATCACAACCGGCCCTACAGCGACATACGCTGCGTCATACTGATCGAGGAAAggttaaaatcaaaaaaacgtTAGAGTGCGAGGAATGCGATATGACGTTTACACATATAACACAGTATAAACGTCACAATGAAACAAAGCATAGTGCAAAAGCTTATCAATGTGATATATGCCAAAAGAACTTTTCAACAAAGTTATATATGCAACGTCATATGGCATCGCACGGTAAGAAACGGTTTATGTGCAAAGAATGCTCAGAAAGATTCACAACAAGAGAAGAACTCAGTGCACATATAAAAGCCGAAGGTCATGATAAACCACTACTCTGCCCAGAATGTGGACTACGCTGCAAAACAAGTAATATTTTAATGGTACATATGCGGCGACATAAAGGTGAAAAACcctttaaatgtaaattttgcaGTAAAGGTTTTCCACGCATGGACGACTTGCGGATACATGAAAAatATCATACTGGTGAAAAATCGCATTTTTGTGAAACGTGTGGTAAAGGCTTTCAACGCAAATACAATCTAACGATACACATGCGAGTCCATACGGGTGAAAAACCATACAAATGTCCGCATTGCCCACATGCCTTCACACAAAGTAACGATTTGAAATCACACATCAGACGACACACAGGTGAACGTTTTCGTTGTGAAATATGTGCAGCGCCTTTCCTGCAGGGATATCAAATGCGACAACACAAGCTTGTAGAGCATGGAGTTAAAGAAAACCCACCGACTCAACGTGTAGAAAAATATACTTCGCCTGAAGAGCAAGAACAGCAAATCAAGCAAAACTTACAACGCGAACTAGCAAAGAATATAACCACGATCGAATCGAATCTGGAAGCAGTGCCAGTGCTGGAAGATTTGGGCTCTATTACTAATAATATTATTGAGCCAGAGGAAGCAATCACGCAATcacaaattagttttttaaatatttga
Protein Sequence: MEKVCRVCMKSDLELFLIFDEKYAVDRTSLAEILSECTIYKVQRYDELPHQICITCMEWAKNAFSFKRSCEQSYRVLIGMLDEDSYRKRDPPNQIKEETDLYAVKSTQTEDTTMYPCERCEEKFFTFDALRAHRENDHKGSAIVCRFCSKTFNRIGYLRSHIAVFHPESGYTSHNQCNICKRQFTRREHMRRHLALIHKIVEMPDATDLGDEAKEEDESFKNETLELTEDIEDISNQSEKKLQLQTEEDQNISLAVPISNQTDSDENEIEDTSFDVRETISSDEEDEKPLADFITRSRKDFAEVLVQEDQPAVNEMCAFEEYLLNNVKIEVASASSAQLLEATYTGNDVEKNEMYHALSKTNEQNCTERKTNGNKCEHCDKSFQSQPALQRHTLRHTDRGKVKIKKTLECEECDMTFTHITQYKRHNETKHSAKAYQCDICQKNFSTKLYMQRHMASHGKKRFMCKECSERFTTREELSAHIKAEGHDKPLLCPECGLRCKTSNILMVHMRRHKGEKPFKCKFCSKGFPRMDDLRIHEKYHTGEKSHFCETCGKGFQRKYNLTIHMRVHTGEKPYKCPHCPHAFTQSNDLKSHIRRHTGERFRCEICAAPFLQGYQMRQHKLVEHGVKENPPTQRVEKYTSPEEQEQQIKQNLQRELAKNITTIESNLEAVPVLEDLGSITNNIIEPEEAITQSQISFLNI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00258214;
90% Identity: iTF_01486512;
80% Identity: -