Basic Information

Insect: Calliopum simillimum
Gene Symbol: -
Assembly: GCA_951812925.1
Location: OX638372.1:100337405-100342176[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0033 0.39 12.5 0.3 1 23 115 138 115 138 0.94

2 12 0.00068 0.081 14.6 0.4 2 23 144 166 143 166 0.94

3 12 9.3e-05 0.011 17.4 2.6 2 23 176 198 175 198 0.93

4 12 1.5 1.9e+02 4.1 0.4 12 23 352 363 351 363 0.88

5 12 0.0025 0.3 12.8 3.5 2 23 376 398 375 398 0.94

6 12 1.7e-05 0.0021 19.6 1.6 1 23 405 427 405 427 0.98

7 12 4.3e-05 0.0051 18.4 0.2 1 22 432 453 432 456 0.91

8 12 0.0019 0.23 13.2 1.3 3 23 462 482 461 482 0.99

9 12 0.00017 0.02 16.6 1.5 1 23 488 510 488 510 0.98

10 12 3.1e-06 0.00037 22.0 2.5 1 23 516 538 516 538 0.96

11 12 5.6e-07 6.8e-05 24.3 3.8 1 23 544 566 544 566 0.99

12 12 0.17 21 7.1 0.1 1 23 571 594 571 594 0.87

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0033	0.39	12.5	0.3	1	23	115	138	115	138	0.94
2	12	0.00068	0.081	14.6	0.4	2	23	144	166	143	166	0.94
3	12	9.3e-05	0.011	17.4	2.6	2	23	176	198	175	198	0.93
4	12	1.5	1.9e+02	4.1	0.4	12	23	352	363	351	363	0.88
5	12	0.0025	0.3	12.8	3.5	2	23	376	398	375	398	0.94
6	12	1.7e-05	0.0021	19.6	1.6	1	23	405	427	405	427	0.98
7	12	4.3e-05	0.0051	18.4	0.2	1	22	432	453	432	456	0.91
8	12	0.0019	0.23	13.2	1.3	3	23	462	482	461	482	0.99
9	12	0.00017	0.02	16.6	1.5	1	23	488	510	488	510	0.98
10	12	3.1e-06	0.00037	22.0	2.5	1	23	516	538	516	538	0.96
11	12	5.6e-07	6.8e-05	24.3	3.8	1	23	544	566	544	566	0.99
12	12	0.17	21	7.1	0.1	1	23	571	594	571	594	0.87

Sequence Information

Coding Sequence: ATGGAAAAAGTTTGCCGGGTTTGCATGAAAAGTGACTTggaattatttttgatatttgatgATAAATATGCTTTGGATGGAATTTGTCTGGCGGAGATTGTTTCAgaatgcacaatttacaaaGTTCAACGCTACGATGAGTTACCACATCAAATTTGCGCCAGCTGCATGGAATGGGCTAAAAACGCATACAGTTTCAAACGTAGCTGCGAACAATCATATCGTGTGCTCATTGGTATGTTAGATGAGAGTAGCTACCCGAAATGGGATTcgccaaatcaaattaaagaaGAAACAGATGCATACGCTGAGAAAAGTACACAAACAGATGATAGCACTATGTATCCATGTGAGAGGTgtgaggaaaaattttttacgtttgATGCATTACGGgCTCATCGTGAAAATGATCACAAAGGCAGTGCCATTGTATGCCGGTTTTGCACGAAAACATTTAATCGCATTGGTTATTTAAGATCACATATTGCTGTATTTCATCCAGAAACTGGCTATACATCCTATAATCAATGTAACATATGTAAAAGACAATTTACGAGACGTGAACATATGCGTCGTCATTTAGCGCTAATACATAAAATTGTAGAAATGGCAGATACAACTGATATAAGCGAAGAAGCAGAAGAAGAGAATTATTCTTTAAAAAGtgagACTTTGGAGTTTACTGAGAACTTGGAATTTATTTCCAGTCACAGGGATAAAAAGTTACAACTGGAAAATATTGAAGCTCAAAATATATCCACAGCAGTggtaaattcaaatcaaattgatAGCGATGATAATGGATTTGAAGACACATCGTTTGAGCTTAAAGAAACACTATCAAGTGATGAAGATGAAAAACCACTGTCAGATTTTATAGCAAAACcacggaaaaattttgtagaagttttaatcGATGAAAATCAACCTACTGTCAACGAAATAAGTGAATTTGGAGAACTTATTACGAACAACGTTAAAATAGAAATTAGCTCAACCGCTTCATCTGCGCAATTATTAGAAGATGCACTCAATGGCGACGGTGGAAAAAAGAATAAACCTGCGCTACAACGACATATGCTGCGTCACGCTGATCGAGGAAagagcaaaatcaaaaaaacattaaaatgtgAGGAATGCAATATGACATTTACGCATATAACACAATATAAACGTCACAATGAAACAAAACATAGTACAAAAGCTACAGCTTATCAATGTGATATATGTCAGAAgaattttacaacaaaattgtaTATGCAACGTCATTTGGCATCGCATGGTAAGAAACGTTTTATGTGCAAAGAGTGCTCAGAAAGATTCACGACAAGAGAAGAACTCAGTGCACATATTAAAGCCGAAGGTCATGATAAGCCATTACTCTGTCCAGAGTGTGGACTACGCTGCAAAACAAGCAATATTTTAATGGTGCATATGCGGCGACATAAAGGTGAAAAACcgtttaaatgcaaattttgtagCAAGGGCTTTCCACGTATGGACGATTTGCGGATACATGAAAAATATCATACTGGTGAAAAATCACACTTTTGTGAAACTTGCGGTAAAGGTTTTCAACGTAAATACAATCTAACCATACATTTGCGTGTGCATACTGGTgaaaaaccttacaaatgtCCGCATTGTCCACATGCCTTTACACAAAGTAATGATCTTAAATCACACATAAGACGACATACTGGTGAACGTTTTCGTTGTGAAATATGTGGAGCACCTTTCCTGCAGGGATATCAAATGCGACAGCATAAGCTTGCAGAGCATGGAGTTAAAGAAGACCCTCCGACGCAACGTGTAGAAAAATACACATCGCCTGAGGAGCAAGAACAGCAAATCAAACAGAATTTACAACGTGAATTAGCGTAA
Protein Sequence: MEKVCRVCMKSDLELFLIFDDKYALDGICLAEIVSECTIYKVQRYDELPHQICASCMEWAKNAYSFKRSCEQSYRVLIGMLDESSYPKWDSPNQIKEETDAYAEKSTQTDDSTMYPCERCEEKFFTFDALRAHRENDHKGSAIVCRFCTKTFNRIGYLRSHIAVFHPETGYTSYNQCNICKRQFTRREHMRRHLALIHKIVEMADTTDISEEAEEENYSLKSETLEFTENLEFISSHRDKKLQLENIEAQNISTAVVNSNQIDSDDNGFEDTSFELKETLSSDEDEKPLSDFIAKPRKNFVEVLIDENQPTVNEISEFGELITNNVKIEISSTASSAQLLEDALNGDGGKKNKPALQRHMLRHADRGKSKIKKTLKCEECNMTFTHITQYKRHNETKHSTKATAYQCDICQKNFTTKLYMQRHLASHGKKRFMCKECSERFTTREELSAHIKAEGHDKPLLCPECGLRCKTSNILMVHMRRHKGEKPFKCKFCSKGFPRMDDLRIHEKYHTGEKSHFCETCGKGFQRKYNLTIHLRVHTGEKPYKCPHCPHAFTQSNDLKSHIRRHTGERFRCEICGAPFLQGYQMRQHKLAEHGVKEDPPTQRVEKYTSPEEQEQQIKQNLQRELA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01486512; iTF_00972422;
90% Identity: -
80% Identity: -