Basic Information

Insect: Meiosimyza platycephala
Gene Symbol: -
Assembly: GCA_963662105.1
Location: OY759209.1:18207783-18211630[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0002 0.019 16.2 0.2 1 23 155 177 155 177 0.94

2 15 1.2e-06 0.00012 23.1 3.9 1 23 183 205 183 205 0.96

3 15 0.00017 0.016 16.4 0.9 1 23 211 233 211 233 0.99

4 15 0.00036 0.035 15.4 0.5 1 23 239 261 239 261 0.87

5 15 9.9e-08 9.5e-06 26.6 4.2 1 23 279 301 279 301 0.99

6 15 1.7e-05 0.0016 19.6 2.1 1 23 307 329 307 329 0.99

7 15 0.00042 0.041 15.2 0.7 1 23 335 357 335 357 0.87

8 15 2.1e-08 2e-06 28.7 1.7 1 23 375 397 375 397 0.99

9 15 2.3e-05 0.0022 19.1 1.8 1 23 403 425 403 425 0.99

10 15 0.00074 0.071 14.4 0.4 1 23 431 453 431 453 0.78

11 15 2.1e-08 2e-06 28.7 1.7 1 23 471 493 471 493 0.99

12 15 5.2e-06 0.0005 21.2 2.7 1 23 499 521 499 521 0.99

13 15 2.6e-05 0.0025 19.0 0.7 1 23 527 549 527 549 0.97

14 15 5.9e-07 5.7e-05 24.1 1.1 2 23 563 585 563 585 0.97

15 15 3.1e-06 0.00029 21.9 0.5 1 23 607 629 607 629 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0002	0.019	16.2	0.2	1	23	155	177	155	177	0.94
2	15	1.2e-06	0.00012	23.1	3.9	1	23	183	205	183	205	0.96
3	15	0.00017	0.016	16.4	0.9	1	23	211	233	211	233	0.99
4	15	0.00036	0.035	15.4	0.5	1	23	239	261	239	261	0.87
5	15	9.9e-08	9.5e-06	26.6	4.2	1	23	279	301	279	301	0.99
6	15	1.7e-05	0.0016	19.6	2.1	1	23	307	329	307	329	0.99
7	15	0.00042	0.041	15.2	0.7	1	23	335	357	335	357	0.87
8	15	2.1e-08	2e-06	28.7	1.7	1	23	375	397	375	397	0.99
9	15	2.3e-05	0.0022	19.1	1.8	1	23	403	425	403	425	0.99
10	15	0.00074	0.071	14.4	0.4	1	23	431	453	431	453	0.78
11	15	2.1e-08	2e-06	28.7	1.7	1	23	471	493	471	493	0.99
12	15	5.2e-06	0.0005	21.2	2.7	1	23	499	521	499	521	0.99
13	15	2.6e-05	0.0025	19.0	0.7	1	23	527	549	527	549	0.97
14	15	5.9e-07	5.7e-05	24.1	1.1	2	23	563	585	563	585	0.97
15	15	3.1e-06	0.00029	21.9	0.5	1	23	607	629	607	629	0.98

Sequence Information

Coding Sequence: ATGGATTGTATGGACCATCCAATAACAGTAAAGGAAGACCGTGTTAATGAACTTCAATTAAAAGTGGAACCAAAAGATGGGGAAGCTGAGGAATTCATTCAAGATATAAGTGGCAAAAGCTTAGGGGAATTTTCTGAAGAGCTTGAGCCAAAAGATGGTTCTCAAGAAGTAGATGGAAGTGTAGTGATAGATATGTTTAAACGATTTGACGAAGAAACAAAGGAATTTATTCAAGAAGATAATACCACGGAAGCTGAATATTTTGACGAGTTAGAAAGTGAAATATTCCCTAACACAAGCGATGAAGAATTTATTTCAGAACCAAAAAAATCAGTGCCACGTATGGTTAAAGCAGAGAATAGAAAATCTGAGTGTTTTTCACAGCGTGCAACTGGCATTAAAAACGAGGAATCAATTACAGATCAAAAGCTTGCAAGAATaccattcgaaaaaaaaacttcatatatttgtattgtttgcggtaaaatttttaaaatacaatattcACTTAACTtacatatgaacatacataAGGACATTAAACCCCACGATTGCAAAACATGTGGACGTAATTTTGCACAAAAGCCACATCTAGCGCGCCATATGAGAACACATAATGGTGAACGTCCATATAAATGCTCTTATTGTCCAGCAGCTTTTGCAGATGTATCGTCTCAGCGTGTGCATCACCGCACTCATACAAATGAGCGCCCTTATGTTTGCGATATTTGTGGCAAATCCTTTCCTACAAATTACTTGAGCAAACATAGAAGAGATGTACATAATATGATTGGCAATAGCGTGAAACCACATGAAAGCAATAAACCAAAACCCTACAAATGCGAAATTTGTGAACATTCTTTTGCTCAAAAAGCACACCTTAATCGTCATATGAGGACACATACTGGTGAACGTCCATATAAATGCTCTTATTGCCCAGCAACTTTTCCAGATTCTAGTACCGTGAAGATGCATCATCGCACCCACACGAATGAGCGTCCTTATGTTTGCGGTATTTGTGGCAAATCATTTACtacaaatgttttgaaaaaacatgaaaaaaaagaacataatAAGAGTGATACTGGCAATGATCCACATAGGAACATTAAACCTAAACCTTACGAATGCGAAATTTGTGAACGTGCTTTTACTCAAAAACCACATTTAACGCGCCATATGAGAACACATACTGGGGAACGTCCATATAAATGCACTTATTGTCCAGCAACTTTTCCTGATTCTAGAGCCGTAAAGAATCATCATCGCACCCACACGAATGAGCGTCCTTATGTTTGCGGTATTTGTGGCAAATCATTTACtacaaatgttttgaaaaaacatgaaaaagaaGTGCATAATCTGAGTGATACTGGAAATAAACCACATAGGAACATTAAACCTAAACCTTACGAATGCGAAATTTGTGAACGTGCTTTTACTCAAAAACCACATTTAACGCGCCATATGAGAACACATACTGGAGAACGGCCATATAAATGCACTTATTGTCCAGCAACCTTTCCTGATTCTAGTACCGTAAGGAAGCATCATCGCACCCACACGAATGAGCGTCCGTATacttgcgacatttgtgacaaaTCATTTACTTCAAATGTTTTGAAAAGACATAAAAGAGTAGCACATAATATAACTGACTTCAGCGAAAAACCACATGAGAGTGCGCGATGCGAAATTTGTGAACGTAATTTTACGCAAAAAGCAAATCTTATGCGCCATATGAAGAGAGCACATCCTGCGGATTTCCAAAATCTTTCAAGCAATCAGAAACATGGcatgCACAAGAATTTGCGTCCATATGTTTGCGATGTTTGTGGTAAATCATTTACATATTCAATTACGTTGAAGCTACATAAAATGATTCACACTGGCGAGAAACCATACGTGTAA
Protein Sequence: MDCMDHPITVKEDRVNELQLKVEPKDGEAEEFIQDISGKSLGEFSEELEPKDGSQEVDGSVVIDMFKRFDEETKEFIQEDNTTEAEYFDELESEIFPNTSDEEFISEPKKSVPRMVKAENRKSECFSQRATGIKNEESITDQKLARIPFEKKTSYICIVCGKIFKIQYSLNLHMNIHKDIKPHDCKTCGRNFAQKPHLARHMRTHNGERPYKCSYCPAAFADVSSQRVHHRTHTNERPYVCDICGKSFPTNYLSKHRRDVHNMIGNSVKPHESNKPKPYKCEICEHSFAQKAHLNRHMRTHTGERPYKCSYCPATFPDSSTVKMHHRTHTNERPYVCGICGKSFTTNVLKKHEKKEHNKSDTGNDPHRNIKPKPYECEICERAFTQKPHLTRHMRTHTGERPYKCTYCPATFPDSRAVKNHHRTHTNERPYVCGICGKSFTTNVLKKHEKEVHNLSDTGNKPHRNIKPKPYECEICERAFTQKPHLTRHMRTHTGERPYKCTYCPATFPDSSTVRKHHRTHTNERPYTCDICDKSFTSNVLKRHKRVAHNITDFSEKPHESARCEICERNFTQKANLMRHMKRAHPADFQNLSSNQKHGMHKNLRPYVCDVCGKSFTYSITLKLHKMIHTGEKPYV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00972403;
90% Identity: iTF_00972403;
80% Identity: iTF_00972403;