Mvio015435.1
Basic Information
- Insect
- Megathymus violae
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000093.1:678522-706501[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0052 0.47 11.6 0.9 1 23 199 222 199 222 0.90 2 19 0.016 1.5 10.0 1.0 2 23 248 270 247 270 0.95 3 19 0.019 1.7 9.8 6.2 2 23 293 314 293 314 0.98 4 19 0.00058 0.053 14.6 0.2 1 20 318 337 318 339 0.95 5 19 0.00047 0.043 14.9 2.0 1 23 347 370 347 370 0.97 6 19 0.0018 0.16 13.0 1.3 1 23 535 558 535 558 0.88 7 19 0.019 1.7 9.9 0.4 1 23 638 660 638 660 0.96 8 19 0.075 6.8 7.9 3.0 2 23 667 688 666 689 0.92 9 19 0.015 1.4 10.1 0.3 1 13 763 775 763 777 0.89 10 19 3.6 3.2e+02 2.7 7.9 1 23 910 933 910 933 0.92 11 19 0.33 30 5.9 0.2 2 23 960 982 959 982 0.95 12 19 0.026 2.4 9.4 0.7 2 23 1005 1026 1004 1026 0.97 13 19 0.094 8.6 7.6 0.3 1 23 1030 1052 1030 1052 0.97 14 19 0.0014 0.13 13.3 1.5 1 23 1057 1080 1057 1080 0.95 15 19 5.1 4.7e+02 2.2 5.6 2 23 1088 1110 1087 1110 0.89 16 19 0.00012 0.011 16.7 1.0 1 23 1117 1140 1117 1140 0.98 17 19 0.0024 0.22 12.6 0.3 1 23 1146 1168 1146 1168 0.97 18 19 5.3e-07 4.8e-05 24.2 2.4 1 23 1174 1196 1174 1196 0.99 19 19 0.00045 0.041 14.9 1.3 1 23 1202 1225 1202 1225 0.97
Sequence Information
- Coding Sequence
- ATGCCCATGGAAACATTCTGGCAAATACGAAAAACATTATTAGATGATACAGAAGAAATTGACAAATATCAAGAAGTTCCTCAACAAACCGTAGCTCCATCTTTCGTTAGCATTGAAATAATGGATAGTGATGACGAAGAAATTATAACACATGTTACTACTCATACTCAAACGGAAAATATAGCAAGACAGGATGATATAAAATATCAGCAACCTACAACCAATATTAAAAAAGAAATAGACTATATCGACCTTACAAATGATTGTAATGATCTTAAAAATGGTCATGTCGAGCCTACAAATACCCGTGTCGAATGTGAAAATATAGGCAAAATCGGAGTGATTAATGAACGGCCAGTTATAGAAAACATACAGACGATCCCAGAATATGACTTAGAAAACAGTGCTTTAATGGCCGAGAACAATGATGAAAGTTTAAATAAAGACATTGAAATGACCGCAAGCAACGAGCAAAAGTTATCCTTACCTGACGACGGCGAATTGTTATCGCAACAGGATAGGTATTTTTCTAACATAAGTCTTATTTTGAACTGTACAAACGCAACTTTGCTGTATTCACAAGAATTATTCGGGTACATATGTTACTTTTGCAATAGATACTTCGAAACCCCTTCGAAACTCAAGGAACACGCGTTAGATACGCACAAAATTATACCCAAATTGGAAATTTACAGAAGCTATCACCTGCGTAACGTTGATAAACTCGATATCACTGGTTTACGCTGTAAGCTTTGCGATACATATTTTAACAACCTTGAGAAAATGAAAGACCACTTAGAAAAAGATCACAACAAACATTTTTACTTTGAAACGGAGACACGAACAATTCCTTTACTATTCAATGAAGAGACACCTCAATGCTGCTATTGCAAGGAAGAATTCGACAATTGCCAAGCTCTGACAAAGCATACGAGGAGTCATTACAGAAATTACGTTTGCAGCGTATGTGACTTGGGTTTCGTTAGTAGGAAACAACTGATACATCACATAACGAATAACGAAAAAGATCACGGAAGTTTCAAATGTAACATATGTTCAGAGCCATTCAACAATTGTGAAACGCTCAAAGAACACGAAAAGATATACCATGACGAAGTGTACCAAGGTAATTACAGCAACAAGGTATATAGGTCTCGGGATATAAAAGACAAGCGGCGTTTAACTCTCTTCAAGGCACAATGTGCTGTTTTTAAAAATCCTATAAGTGAACTTACCAGTTCTACGTTACAAAGTTCGACTTCTGCAAATGACAGTGGTAACACTACGAGAGAATACATTGATGTTGCAAGTGAAATCACTGATAGATTGAATGTAAGGCCGGAGCCAGTGTCTGTTGACATTAGAAACTGTGAAGCTGAAGAAATAAGTGAAAGTAAAATTGACCCTGGTAGAGAGACTAGTAAAAAAGGTAATCAAATTTCGGGAAAGACGGAAAAGAGAAGAGAAGAGGATCCATATATGTTGAGAAATTCACTCATAGCCAAAGGGCTGTGTACAGAAAATGAAAAACATTTCTATAACCTTAAAGTGATATTGGAAAGCACAAACGCTACTTTAATTCGGGAAAAACGTGGAAATTTATTCGCGTGTTACTTTTGCAATAAATCTTACGAAAATCCAGAGGATTTGAAAAAACACAACACCAATTCACATATGTCTCTTAATCGAGTGGATTTTAAAATTCCAGTCGGCCACCGTATAGTTGTAGCGCACCTCGACACAACTGACCTTTATTGTAAACTTTGCAACGTTAATATTGATAATTTTCTGGAATTATTTAATCACTTAAGCGAAGTCCATCAAAGAGCGTTGTTCGATGAAATGAAGAATCAAATATTAGCTTTTAAATTCACTTATTACTTGAATGCGGCAAATGAAAAAGTCTACAGGTATCTGTGTGATCTGTGTAATAGAGAATTCGGAACAAGGAACGCTATAAAATATCACGTAAATACTCATTACGAGTTTACAATGACCAGTTGTGGTTTTTGCAACGAAAGCTTTAGCAATTCGAAATTGAAAGAACTTCATATGACATTTCATCACAATGTTCGGAAATTAAATGACAATGTCAAACCCAGAGATGGTGTTGAATCTACAAATCCAATCAAAGATTCAAATAAACGCGTCGCACCGACAAACGAACGCATCAATTTGACAAAAGAACGCGTTGCACCGACAAACGAATACGTCGATTTGACAAATGAATGCGTCGAATCGAGTCAGAAACGTCTTAAACGTACGGATGAAGGTCCCAAACAAATGCATAAATGTCATATTTGCGATAAAGCATTTCCGTCTCCAAAAGCCTCTTTCAAAATGGAATGTGAGAATAAAAAAAATATTCATAAAATGCATAATGAAACTGTTGATATTGGTGATACCAATGATGATATTCATCAGATCATAAGTTATAATATGCAAGAAAATGCACAAATTCAAAATGAAAAGTGGAACATACCAAAAGATCCGAATCAAAGCACAGAACAAATCTGTGAACAGTGCATAGCAAGGCTGAAGGACGCAATAAGCTTCAAGGCGGAAGTGCTGGCATCGACGAGGGTTTTGGAAAACCTTGGCAAGCCACGGCCTGTGAAGAAGAAAGGAGACGAAGGCCCACAGGAAATGGTGAAGCATACAACAAACATCCTCACTATCATGGAGAACTCCAATGCGACGCCCATCCGTTGCCATGGTGACGGGGGCTACATGTGTTGTTTCTGCAACCACCAGTACCAGAATCCGGACGATCTGAAGAACCACACATTGTTCTGTCATGATTTCAAGACAAAAAGAACACTCACCAAAGGTAAACGGCCGTCTTCGTACTTCGTGAAGCTGGATATATCCTATCTGAAATGCACCATTTGCAATACGGACATGAATACTTTAGAAAAATTAATAGAACACTTAATTAAAGACCATCAGAAACCCATGTATATGGACATTAAAAACCATATATTACCGTTTAGATTTGAGAGTGAAGAACTGAAGTGTACAGTGTGTTCGAACGTTTACAACAAGTTCAAGCTATTGCAGGAACATTTGAATGTACATTATCAGAATTATGTGTGTGAAGTGTGTAACGCGGGTTTCGTTTCACGAATGATCCTCCACAATCATACAAGGGGGCATAAAACCGGTGTGTTCACGTGTGAAATTTGCCTAAAAGTGTATTCGACGCGTCGGAAACTAACTTATCATAAGAATTTAGTGCATCGACATTCGTATTTAGTGAGCAAGTGCGGTTATTGCCATCAGAAGTTCAAATCGTATCACCGGAAGTTGGAACATTTGACAAAAGTACACAACGTCAAGCCAATGACTTATACCTGTAAAGCTTGTAACAGAAATTTTAATAGCCAAGCGGCGTTAAGGGTGCACAGGAAACGCGATCACCTGATGGAGAGGAAGTACAAGTGTACAGAATGTGACATGGAATTCTTCGCCAGAGCTGAACTGAACGCTCATTCCTTGAAGCATACAGGGTTGAGAGAGTTCCAGTGCGATGTTTGCCAGAAGATGTTCAAGAGGAAGTTCACGCTGACTGAACATATGCGGATACACGAGAATAATTGCAGATTTAAATGCGAGCTGTGCGGTGCAGCGTTTGTGCAGAAGTGCAGCTGGAGGGGACATATGCGGAACAAACATGGGATCATCAGCTGA
- Protein Sequence
- MPMETFWQIRKTLLDDTEEIDKYQEVPQQTVAPSFVSIEIMDSDDEEIITHVTTHTQTENIARQDDIKYQQPTTNIKKEIDYIDLTNDCNDLKNGHVEPTNTRVECENIGKIGVINERPVIENIQTIPEYDLENSALMAENNDESLNKDIEMTASNEQKLSLPDDGELLSQQDRYFSNISLILNCTNATLLYSQELFGYICYFCNRYFETPSKLKEHALDTHKIIPKLEIYRSYHLRNVDKLDITGLRCKLCDTYFNNLEKMKDHLEKDHNKHFYFETETRTIPLLFNEETPQCCYCKEEFDNCQALTKHTRSHYRNYVCSVCDLGFVSRKQLIHHITNNEKDHGSFKCNICSEPFNNCETLKEHEKIYHDEVYQGNYSNKVYRSRDIKDKRRLTLFKAQCAVFKNPISELTSSTLQSSTSANDSGNTTREYIDVASEITDRLNVRPEPVSVDIRNCEAEEISESKIDPGRETSKKGNQISGKTEKRREEDPYMLRNSLIAKGLCTENEKHFYNLKVILESTNATLIREKRGNLFACYFCNKSYENPEDLKKHNTNSHMSLNRVDFKIPVGHRIVVAHLDTTDLYCKLCNVNIDNFLELFNHLSEVHQRALFDEMKNQILAFKFTYYLNAANEKVYRYLCDLCNREFGTRNAIKYHVNTHYEFTMTSCGFCNESFSNSKLKELHMTFHHNVRKLNDNVKPRDGVESTNPIKDSNKRVAPTNERINLTKERVAPTNEYVDLTNECVESSQKRLKRTDEGPKQMHKCHICDKAFPSPKASFKMECENKKNIHKMHNETVDIGDTNDDIHQIISYNMQENAQIQNEKWNIPKDPNQSTEQICEQCIARLKDAISFKAEVLASTRVLENLGKPRPVKKKGDEGPQEMVKHTTNILTIMENSNATPIRCHGDGGYMCCFCNHQYQNPDDLKNHTLFCHDFKTKRTLTKGKRPSSYFVKLDISYLKCTICNTDMNTLEKLIEHLIKDHQKPMYMDIKNHILPFRFESEELKCTVCSNVYNKFKLLQEHLNVHYQNYVCEVCNAGFVSRMILHNHTRGHKTGVFTCEICLKVYSTRRKLTYHKNLVHRHSYLVSKCGYCHQKFKSYHRKLEHLTKVHNVKPMTYTCKACNRNFNSQAALRVHRKRDHLMERKYKCTECDMEFFARAELNAHSLKHTGLREFQCDVCQKMFKRKFTLTEHMRIHENNCRFKCELCGAAFVQKCSWRGHMRNKHGIIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00970620;
- 90% Identity
- iTF_00970620;
- 80% Identity
- -