Basic Information

Insect: Megathymus violae
Gene Symbol: -
Assembly: GCA_003671415.1
Location: PDGT01000037.1:1234863-1237652[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3e-06 0.00028 21.8 1.7 1 23 226 248 226 248 0.98

2 9 2.9e-08 2.6e-06 28.1 1.6 3 23 256 276 254 276 0.98

3 9 9.8e-05 0.0089 17.0 0.3 1 23 282 304 282 304 0.98

4 9 8.7e-06 0.0008 20.3 2.4 1 23 310 332 310 332 0.99

5 9 2.2e-05 0.002 19.1 1.7 2 23 515 536 514 536 0.96

6 9 2.8e-09 2.6e-07 31.3 1.6 1 23 542 564 542 564 0.98

7 9 0.0024 0.22 12.7 0.6 3 23 572 592 570 592 0.97

8 9 6.1e-05 0.0056 17.7 1.5 1 23 598 620 598 620 0.99

9 9 0.019 1.7 9.8 0.8 1 23 626 650 626 650 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3e-06	0.00028	21.8	1.7	1	23	226	248	226	248	0.98
2	9	2.9e-08	2.6e-06	28.1	1.6	3	23	256	276	254	276	0.98
3	9	9.8e-05	0.0089	17.0	0.3	1	23	282	304	282	304	0.98
4	9	8.7e-06	0.0008	20.3	2.4	1	23	310	332	310	332	0.99
5	9	2.2e-05	0.002	19.1	1.7	2	23	515	536	514	536	0.96
6	9	2.8e-09	2.6e-07	31.3	1.6	1	23	542	564	542	564	0.98
7	9	0.0024	0.22	12.7	0.6	3	23	572	592	570	592	0.97
8	9	6.1e-05	0.0056	17.7	1.5	1	23	598	620	598	620	0.99
9	9	0.019	1.7	9.8	0.8	1	23	626	650	626	650	0.95

Sequence Information

Coding Sequence: ATGTCGTTGAGGCGACCGCTGCCGCACGCTATCACCACCAAAATTTCCTCGATACACACAACTGCACCCTATGTACTCTACAAGGATGGAGTCGAGCGCGCTCCGCCAGGGACACAATGGGGTGGTGCAGTTCTGGACGGAGGGTACCAGACCATGCAGCATCAAAGCCCAGGGGGGCCGTCACCGCAGCCCGAGCCACAGCTCGCATCCCCCGCGCCTTCGCCGTACCCTCCCGCCCCACCTCCTCCAGACCAATCCGCGGAGGAGGCCGCTCAGCAACTCGCACAGCAGCAAGCCCAACAGCAAGCTCAGCAACAGGCACAACAACAGCAACAAACGTCACCTGAACACATGCAAGTGGAACAGCAACTACAAAGCCAACAGCAACCTCAACCACCAGCACAAGATCATCTCGATCGTACACCATGTTTCATACCACAGCCAGACCTACAACAGCAGTATGCAACGCCATATTTCAAAGAGACAAGACCCACCAGCCACATGCTCGGAACGGGCGGCTTCCCCCTTCACTACTTGAAGCAGAACGGCGGAGTACTCTCACTAGAAGGTCCGCTAGATCAGTATGCAGCGCCCGACCTCCGGCACTTGCCAGACATTGTACAGCCAGAGCCGCCCAAGCCTCGCAAACACAACCCCAACTCTGAGCTGCGGCTTTTCAAGTGCCTCACTTGTGGCAAAGATTTCAAGCAGAAGTCCACTTTACTTCAGCACGAGCGCATCCACACGGATTCGAGGCCGTACGGGTGCCCTGAGTGCGGCAAGCGGTTCCGCCAGCAGTCCCACCTCACGCAGCATCTCCGCATCCACGCGAACGAGAAACCCTACGCGTGCGTCTACTGTCCCCGCTCGTTCCGGCAGCGAGCGATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCATATACGTGCAGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATGCCCCTCCCCGCTCCCCGCGCGCGCCGCCCGCACTGACCCCAGCGTCAGTCAGTGCCGGCGCCGCCTGCGAATCCCGCCGCCCCACACTCGTTCGATTCGGTCTCGCATCCATTGGCCTTCCTATCAAACAAATTCTCGGTCCCCTCGTCGCCCGCCTAGCGGACGGCGCTCGCGAGACACGCAACCGATCGCCGGACGCTCCTGTAACCGTCCTCAACGTATCACCGCACCTTATCTTCAAGAACGGGACAACGCCGACCTTGTGGCCCCAAGACGTACCGTTCCCACCGGACGAAAATAAAGAGGAAGTACAATCCACCTTCGGAGACGCGGAGGGACAAAACGGTGAACAGCGAGGTTCGTGCTTCTCACCCGGCGACACGGCGCAATATCCCGCTTACTTCAAAGACACCAAGGGTCTCAACCATGCCGTCTTCGGCTCGGGACTTTCGTTACAATATCTGAAAGGAGGAAAACTCCCAGACGTTCTCGGCGGTCGTGCGATGCCCTTGTACGTCCGTTGCCCGATTTGCCAAAAAGAGTTCAAACAGAAGTCGACTCTTCTCCAACATGGCTGTATTCACATAGAGTCCCGGCCGTACCCGTGTCCAGAGTGCGGCAAACGCTTCCGTCAGCAATCACATCTAACACAACACCTCCGCATCCACACAAACGAAAAACCATACGGTTGTGTGTATTGTCCCCGATTTTTCCGTCAACGGACAATCTTGAATCAACATCTCCGCATTCATACCGGGGAGAAACCGTACAAATGCACCCAGTGTGGAAAAGACTTCAGACAGAAGGCGATCTTGGACCAGCACACGCGGACACATCAAGGCGACCGGCCGTTCTGCTGTCCGATGCCGAACTGCAGACGGCGATTCGCGACGGAACCGGAGGTGAAGAAGCACATCGATAATCACATGAACCCGCACGCGGCGAAGGCACGGCGTGCGGACGCGAAGACTCCCCGGCCGCTGCCGCCGGCCGCCGCGGTGGTAAAGCCGGAGCTTTACTTCCCCCAGTGCTACGCACCACCCTTTCAGCAGTTCCCAGGCGGCGGCGAGTTTAAGCCGACGGTGGGCCCCGGGCCGGTGGCTTGTCTACCGGCCCAGTGA
Protein Sequence: MSLRRPLPHAITTKISSIHTTAPYVLYKDGVERAPPGTQWGGAVLDGGYQTMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDQSAEEAAQQLAQQQAQQQAQQQAQQQQQTSPEHMQVEQQLQSQQQPQPPAQDHLDRTPCFIPQPDLQQQYATPYFKETRPTSHMLGTGGFPLHYLKQNGGVLSLEGPLDQYAAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCSECGKHFRQKAILNQHVRTHQGERYSHIYAPPRSPRAPPALTPASVSAGAACESRRPTLVRFGLASIGLPIKQILGPLVARLADGARETRNRSPDAPVTVLNVSPHLIFKNGTTPTLWPQDVPFPPDENKEEVQSTFGDAEGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHAVFGSGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADAKTPRPLPPAAAVVKPELYFPQCYAPPFQQFPGGGEFKPTVGPGPVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01078408;
90% Identity: iTF_00673685;
80% Identity: -