Mvio015451.1
Basic Information
- Insect
- Megathymus violae
- Gene Symbol
- -
- Assembly
- GCA_003671415.1
- Location
- PDGT01000093.1:805956-811523[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.82 74 4.7 0.2 2 23 138 160 137 160 0.92 2 24 0.0036 0.33 12.1 2.2 1 23 182 204 182 204 0.98 3 24 0.0093 0.84 10.8 6.8 1 21 208 228 208 230 0.95 4 24 0.0029 0.27 12.4 0.2 1 23 235 258 235 258 0.93 5 24 0.0011 0.1 13.7 0.7 1 23 264 287 264 287 0.96 6 24 0.036 3.2 9.0 0.1 1 23 334 356 334 356 0.93 7 24 0.0013 0.12 13.5 0.6 2 23 380 402 379 402 0.95 8 24 0.0079 0.72 11.0 2.6 3 23 426 446 424 446 0.96 9 24 0.012 1.1 10.4 3.8 3 23 452 472 451 472 0.97 10 24 0.045 4.1 8.7 0.9 1 20 478 497 478 501 0.88 11 24 0.00037 0.034 15.2 1.2 1 23 507 530 507 530 0.92 12 24 0.11 9.6 7.5 2.7 1 23 536 559 536 559 0.96 13 24 0.00014 0.013 16.5 0.4 1 23 565 587 565 587 0.95 14 24 5e-06 0.00045 21.1 0.5 1 23 593 615 593 615 0.99 15 24 0.00024 0.022 15.8 4.8 1 23 621 643 621 644 0.96 16 24 0.066 6 8.1 0.4 3 23 776 796 774 796 0.95 17 24 0.27 25 6.2 6.7 1 23 818 840 818 840 0.95 18 24 0.00062 0.056 14.5 1.2 1 23 844 866 844 866 0.98 19 24 0.00041 0.037 15.1 0.1 1 23 871 894 871 894 0.96 20 24 0.00022 0.02 15.9 1.3 1 23 900 923 900 923 0.98 21 24 0.05 4.5 8.5 1.7 1 23 930 953 930 953 0.97 22 24 9.1e-05 0.0083 17.1 1.8 1 23 959 981 959 981 0.97 23 24 2.6e-06 0.00024 22.0 1.1 1 23 987 1009 987 1009 0.99 24 24 7.9e-06 0.00072 20.5 3.9 1 23 1015 1037 1015 1038 0.96
Sequence Information
- Coding Sequence
- ATGCGTCGACGCAGGAAAGCCAATAATGCTGATTGGAAACCAGAGGAGTCTGAGAACCGAATCGATAAAACAATGATGCGTAGAAACGCCATGATAATTCTAGAATATTCCACCGCATGGGCCTTTCGATGCGCTGGCGCCAATGCACAAGAAAATAACACTGTACGGATAAAATGGAAAAAGAAAAGGAGGGTGATGGGCGAGAAAGCGAACGCTGCTTTTATTCTGCAACATTCTAACGCGGTGGCCTTTAGATGGATGCGTGGGAAGTTTATGTGTGCATACTGCCCGCTAATACACCCAAACATTAGTGAGATTCGTCTTCATTCTAACACACATGATAAAATGAAGCTATTTGAAAAACCAGATGTCCGCAACTCATTTCCTTTAAAGGTCGATATATCTGATCTATATTGTTCCATCTGTCAAGATGCAGCAGAAAACTTGAAAGACCTCAAGAAACATTTACAGGAGAAGCATTCGAAAATCATTGATGAAGAGTATAGTGATGGAGTGGTGCCTTTCGTATTGACTAGCAAAATCTTCAGATGCGTGCACTGCGGTATACACTTCGAAGGATTTATGAGTCTTTTTATTCACATGAATGTGCATTATCAAAGCTTTGTGTGCCATACATGCGGAAAAAGTTACTCTGGTGAGCATAAACTGAGGTCACACCAGAAATGCCACGAAGTCGGGCAATTCCCATGCCCTAAATGCGAGATAATGTTCAAGAATCGCGTCCTCAAAAATCGTCATTTAGCTCTGGTACACGGTCCCAAGAAGAGATATCGTTGCCCCATCTGTGATCTAACTTTTGATTCGTATCATGCAAGGCTAAAGCATCTTTCAGTGGTTCACGGACAAAAATCGGAGTATCGATGGCGCGATCAAAACCCTAAGTGGAAACGGCGACGCAAGTATAACGATCAAAGAGATAATGCTGCTATTATATTAGAATTTTCAAACGCACTTCCCTTTAGGTGGAAACGGGGAACTTTCACCTGTGCGTTCTGTCCACAATCATTCGGAGACTTTGCAGGTCTCCAAACACACTCAGCTGAGCATCCGAATAAAATAGAAGCTATGCGACTCGCCAGGCCCTGTGACAACGTCAAAATTGAAATCAGCAACCTTCGATGTGAGATATGTCACCAGACCACGAAAAGTCTAGACGCTCTTAGAGACCATTTGATATCGGAACACGCAAAGCCTATTATAAAAGATCAGGGTATCGGTGTTACCCCTTTTTACTTGAATAATAAGGAAATGATTTGCACTCACTGCGATGAAAAATTTGAGTTATTCACGAAGCTGAACACTCATATGAACCAACACTATCCTAATAATATTTGCTGTCATTGCGGCAAAGCATTCGTCGCAGCACATAGACTAAAATCTCATCAACTTATTCATGAATTAACCGACCATTATAAATGCACAAAATGTGAACAAGTCTTCCAAACTAGGGCGCTCAGAAATAATCATTTTGTTTTAGTACATGGTCCCGAGTGTAGATACAGGTGTCCGTATTGTAATGAATCATTCAAGAGTTACTCAGATAGAGGAAGGCATTTAACAGAGTCTCACGGGAAGAAGATTGAGTACCCATGTCATTTATGCTCTGCAGTTTTTGCTATGTGTAATCAAAGAACGAAACATATTAAGCAAGTCCATATTAAGCATAAGGCGTTTCTCTGCGAATTTTGTCCGTACAAATTTGTTACCGCTGCTCAGTTAAGGAGCCATATGGTTAAACATGTGGGAGAGAGGAAGTACCAGTGTGAGGTTTGCAAGAAAGCGTACGCGAGGGTCAAGACTTTGAAAGAGCACATGCGAATACATAACAATGATAAAAGATTCGTTTGCGAATATTGTAACAATGCATATGTCCAGAAATGTAGTCTGCAAAGTCACATGAAGACTCATCATCCTAACGCAGAGCCTCTGAAGAAAATAAAGATAACGACTTTTCGAAGGAAAACTGCAGAAGTACAGATAAATGAAGTGGAATGTGCAGATAAAAAATTGGCTGCGCTTCTTACTTCCGCTGACCTGAAACTTTCAAAGAAAGAAGAGGTGAGACATAAAATCAGCGAGGGAAATGAAAGACGAGCTGTGTATAGGAAGAATATTAAGTTAATTATGAGTTCATGTACCGCTTACCCGTTTAAATACAGGAAAGGAGCGTACTTATGCTTCTTCTGCAAAAGTACTTTCCTGGAGCCGGATAAAATGAGAGAACATACTTTACAACAGCATGCTGATGTAGCCTTCAAACCTCGAAAATATGAGCCTTTAAAAATGGACTTCTCGATGACAATTTGCAAATTGTGCGGCTTTCGAGTAGATAATTATAATACGTTAAAATTACATTTAATGGATCACGGAAAAGCTATCGATTCCACACACGGTGAGAGTATTTTGCCTTACAAGCTAAGCAGAGAGGAACACTGTTGCCAGGTTTGCGGTAAAAGATATGAAATGTTCCTTAGTCTCCACAAGCACATGAACGATCATTATGAGCATTTTATATGTGAAACATGTGGAAAACGTTTCGCGACGATGCAGAGAATGCTGAACCATACCCGGACACATGAACGCGGTGATTTCCCGTGTAAACAATGCGGGGAAACATTATCAACATATGCGTCTCTATATGCTCATATTGCTAAAGTCCATCGCTCAAACAAACGTTACAAATGTCCAATCTGCGATGAAAAATTTGTTACATACAAATTTAGGATGAAACATCTGAACACAGTTCATGGAGAAAAGACAGCTACATTTCCTTGTCCGTCGTGCCCTAAAATTTTCGATCTTTGCAGTCGTCGTACATCGCATATACGATCACGGCATCTTCAAGAGAGAAATCATGTTTGCAACGAATGTGGCATGAAGTTTTTCACGAATTACGAATTACAGGAACATACGATAAAACATGTCGGTGCTAGGATATATCAGTGTGATGTTTGCAAAAAATCTTACGCTAGGTTGAAGACTTTGAGAGAACACATGAAAATACATAACAATGATAGAAGATTTGTGTGTCCGATTTGTGGGCAGACATTTATTCAGAAATGTAGTCTCAAACAGCATTTCAGAGTGCATCACCCAATGTTAATAAAAGATATGTTTTAG
- Protein Sequence
- MRRRRKANNADWKPEESENRIDKTMMRRNAMIILEYSTAWAFRCAGANAQENNTVRIKWKKKRRVMGEKANAAFILQHSNAVAFRWMRGKFMCAYCPLIHPNISEIRLHSNTHDKMKLFEKPDVRNSFPLKVDISDLYCSICQDAAENLKDLKKHLQEKHSKIIDEEYSDGVVPFVLTSKIFRCVHCGIHFEGFMSLFIHMNVHYQSFVCHTCGKSYSGEHKLRSHQKCHEVGQFPCPKCEIMFKNRVLKNRHLALVHGPKKRYRCPICDLTFDSYHARLKHLSVVHGQKSEYRWRDQNPKWKRRRKYNDQRDNAAIILEFSNALPFRWKRGTFTCAFCPQSFGDFAGLQTHSAEHPNKIEAMRLARPCDNVKIEISNLRCEICHQTTKSLDALRDHLISEHAKPIIKDQGIGVTPFYLNNKEMICTHCDEKFELFTKLNTHMNQHYPNNICCHCGKAFVAAHRLKSHQLIHELTDHYKCTKCEQVFQTRALRNNHFVLVHGPECRYRCPYCNESFKSYSDRGRHLTESHGKKIEYPCHLCSAVFAMCNQRTKHIKQVHIKHKAFLCEFCPYKFVTAAQLRSHMVKHVGERKYQCEVCKKAYARVKTLKEHMRIHNNDKRFVCEYCNNAYVQKCSLQSHMKTHHPNAEPLKKIKITTFRRKTAEVQINEVECADKKLAALLTSADLKLSKKEEVRHKISEGNERRAVYRKNIKLIMSSCTAYPFKYRKGAYLCFFCKSTFLEPDKMREHTLQQHADVAFKPRKYEPLKMDFSMTICKLCGFRVDNYNTLKLHLMDHGKAIDSTHGESILPYKLSREEHCCQVCGKRYEMFLSLHKHMNDHYEHFICETCGKRFATMQRMLNHTRTHERGDFPCKQCGETLSTYASLYAHIAKVHRSNKRYKCPICDEKFVTYKFRMKHLNTVHGEKTATFPCPSCPKIFDLCSRRTSHIRSRHLQERNHVCNECGMKFFTNYELQEHTIKHVGARIYQCDVCKKSYARLKTLREHMKIHNNDRRFVCPICGQTFIQKCSLKQHFRVHHPMLIKDMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00673678;
- 90% Identity
- -
- 80% Identity
- -