Basic Information

Insect: Megathymus ursus
Gene Symbol: -
Assembly: GCA_003671415.1
Location: PDGT01000063.1:1666917-1671118[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00026 5.9 7.4 0.1 15 43 255 283 252 287 0.80

2 4 3.1e-05 0.71 10.4 0.1 17 52 284 320 281 322 0.83

3 4 0.00013 3 8.4 0.0 21 49 345 373 337 376 0.84

4 4 0.0005 11 6.5 0.0 21 46 373 398 369 403 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00026	5.9	7.4	0.1	15	43	255	283	252	287	0.80
2	4	3.1e-05	0.71	10.4	0.1	17	52	284	320	281	322	0.83
3	4	0.00013	3	8.4	0.0	21	49	345	373	337	376	0.84
4	4	0.0005	11	6.5	0.0	21	46	373	398	369	403	0.89

Sequence Information

Coding Sequence: atgaaattatttaaaaacttacatcAGGCCTATGGAACTTTGACAGGAATGTTGgTAGAATCTGAGGATAATATGCCTCCCTACCTATGTAGTGAGTGTTCTCATCAACTGATGAATTGTGATAGCTTTAGGAATAAGATATTACAATCGCATTTGACTCTGCAGGAAATTTTGAAGAAGGATGATTGtaTAACTCTAGAATCCATAAAAAACCAGAGGCTGAACGATTCAAATCTTGGcacacataataaaacatatcacTATGATGTTGAAATTGAACATGTAAAGAATGAAAATATAGATCCAGATGAACAGATGTGCCCAACAGACATACCTACagcatatgaacattttattctCAATGGAATCAAGAAGGAAAAGGATGTGTTAAACCATGATAGAGACCAAGACACAACCGATGATGTGATATATTCTCCtatcttacataaatatattgttcgTGATAGTGTCAAGGTGGAAAAAGATGATGCAGATGATGCGTATAATACGGACAGTCTCGATTGTCAAGATAGTGTCAATTACGATATGGAGCATTGTAATACATTTGTTGATGAAGATTACTCTGCGGAAGTCAGTCAAGCTATACGAGAGGAAGAAGAAATAGCTAAGCATACTGTCGGCACAGATGAAGACCTGAGGAACATGACAACCAATTTTATCCAATCCAAGTTTGATAGTCAGTCCAAATCATCACAGGAAACAGACACTAGccttatattaaatgataagtTATCTTCAGATAATCGTTCCCACGAACCTGCTGAGAAACCATTCACTTGTGATATATGTAAGAAGTCATTCAGTCAAAAGTCTTGGTTAATGAATCATTCTAGGATACATTCTGGGGAGAAACCTTACTCGtgtgatatttgtaaaaaatcattcaatGATAAGAGTAATTACCGAAAACATTTGAGGATACATTCTGGTGAGAAACCATATCCTTGTAAGTTCTGTGAAAAAgcatttaatagaaaaaattactTGGAAAATCATTTGAGGACTCACTCTGGTGAAAAACCTTATTCATGTGGAatatgtaataaagtatttgGCCATAAACATCACCTGAAAAGTCACTTGCGAATACATTCTGGTGAAAAACCATATTCATGTCAAATCTGTCATAAAGGATTTAGCGAAAAAAGCAATTTACACATGCATTTGAAAGTACATTCTGgtgataaattatattcatgtgATGAATGTAAAATTGCATTTAGTACAAAATATCTATTGAAATGTCATTCACGTGTTCACTCTGGAATATCAAACGAGAATTCTAAAACAACACATGTAGTCAGCGGGCTACAAAACACGTAA
Protein Sequence: MKLFKNLHQAYGTLTGMLVESEDNMPPYLCSECSHQLMNCDSFRNKILQSHLTLQEILKKDDCITLESIKNQRLNDSNLGTHNKTYHYDVEIEHVKNENIDPDEQMCPTDIPTAYEHFILNGIKKEKDVLNHDRDQDTTDDVIYSPILHKYIVRDSVKVEKDDADDAYNTDSLDCQDSVNYDMEHCNTFVDEDYSAEVSQAIREEEEIAKHTVGTDEDLRNMTTNFIQSKFDSQSKSSQETDTSLILNDKLSSDNRSHEPAEKPFTCDICKKSFSQKSWLMNHSRIHSGEKPYSCDICKKSFNDKSNYRKHLRIHSGEKPYPCKFCEKAFNRKNYLENHLRTHSGEKPYSCGICNKVFGHKHHLKSHLRIHSGEKPYSCQICHKGFSEKSNLHMHLKVHSGDKLYSCDECKIAFSTKYLLKCHSRVHSGISNENSKTTHVVSGLQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00970669;
90% Identity: iTF_00970669;
80% Identity: iTF_00970669;