Basic Information

Insect: Megastigmus stigmatizans
Gene Symbol: gtf3a
Assembly: GCA_900490015.1
Location: UELV01096459.1:8666-12669[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.24 31 6.2 1.1 1 23 627 649 627 649 0.86

2 16 0.31 42 5.8 2.4 1 19 655 673 655 676 0.89

3 16 0.0013 0.17 13.3 1.6 3 23 712 733 711 733 0.97

4 16 0.0013 0.17 13.3 2.2 1 23 740 763 740 763 0.98

5 16 0.00032 0.043 15.2 1.1 1 23 769 792 769 792 0.94

6 16 3.1 4.1e+02 2.6 2.3 2 23 800 820 799 820 0.93

7 16 7.2e-07 9.5e-05 23.5 1.8 2 23 826 847 825 847 0.97

8 16 9.9e-06 0.0013 19.9 0.2 1 23 853 875 853 875 0.99

9 16 0.00057 0.076 14.4 2.0 2 23 887 909 886 909 0.95

10 16 0.025 3.4 9.2 2.3 1 23 915 938 915 938 0.95

11 16 0.035 4.7 8.8 2.9 2 23 960 982 959 982 0.93

12 16 0.00054 0.072 14.5 1.2 2 23 989 1011 988 1011 0.96

13 16 5.3e-05 0.0071 17.6 1.6 2 23 1019 1040 1018 1040 0.96

14 16 0.0087 1.2 10.7 2.5 1 23 1046 1069 1046 1069 0.95

15 16 0.38 51 5.5 4.3 2 23 1076 1097 1075 1097 0.96

16 16 0.0026 0.34 12.3 2.4 1 23 1103 1125 1103 1125 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.24	31	6.2	1.1	1	23	627	649	627	649	0.86
2	16	0.31	42	5.8	2.4	1	19	655	673	655	676	0.89
3	16	0.0013	0.17	13.3	1.6	3	23	712	733	711	733	0.97
4	16	0.0013	0.17	13.3	2.2	1	23	740	763	740	763	0.98
5	16	0.00032	0.043	15.2	1.1	1	23	769	792	769	792	0.94
6	16	3.1	4.1e+02	2.6	2.3	2	23	800	820	799	820	0.93
7	16	7.2e-07	9.5e-05	23.5	1.8	2	23	826	847	825	847	0.97
8	16	9.9e-06	0.0013	19.9	0.2	1	23	853	875	853	875	0.99
9	16	0.00057	0.076	14.4	2.0	2	23	887	909	886	909	0.95
10	16	0.025	3.4	9.2	2.3	1	23	915	938	915	938	0.95
11	16	0.035	4.7	8.8	2.9	2	23	960	982	959	982	0.93
12	16	0.00054	0.072	14.5	1.2	2	23	989	1011	988	1011	0.96
13	16	5.3e-05	0.0071	17.6	1.6	2	23	1019	1040	1018	1040	0.96
14	16	0.0087	1.2	10.7	2.5	1	23	1046	1069	1046	1069	0.95
15	16	0.38	51	5.5	4.3	2	23	1076	1097	1075	1097	0.96
16	16	0.0026	0.34	12.3	2.4	1	23	1103	1125	1103	1125	0.98

Sequence Information

Coding Sequence: ATGTCGAGTAAAGTGAAATTACTGGAAAATGAAGATCATAATTATAGTGATCTTCAATTGGAGAAATCAGAAAATGTAGAGAATGTTGTAAATATGCATTGTAAAAGTAACATTATATACTCGAAAGTATCGAATTCAGGAAAAGAGAAATATATTGgcttaaaaataacaaatcttaGTGATTTGAAAAAAGCAACTCCTCGTCTAAAGTTGCCTGCAATATTGTCATCACCAACTGTTAAAAGAACTCCAACAGTGCCTGAAGAAGTTAAGCAAAAATTGCATAAGTACTGCCGTACTTGTGCAGGATTAAAAGTTCCATTAGTTGATATTTTTAGTGAAAAAGGAGTCCAAATGAGACTTAGTCAGCAAATACAACATTTAGAAGACATTAATGAACATGATAGTTTATCCACACAAATGTGCATGGACTGTATATGTGATATGAAAATGAGTTACAAATTTTTCATGCAAATTAAGAAAGCCGAAATGAAGTTAAAATCACTTAGCAATTCACTTACTGATTGTgtaataaaatcaaatcaaggaaacactgaatatttacataaaaccaaaaataatgCAGAGCTTGACTCTTCATTCAATGattcatttaaaacaaatagTGTAAGTGATTCTGATGAAATAGACACAAAATCTGAAATAGGAAATTATATCTATTCGGAAATGAATGACCCTTGTAAtgatgaaaatgattttattgaaGAGTTTGATCCTGATAATCCTCttaatacaaatgaaaataattcaattaaaaatgaagaatCTAAAATTTCTTTACCAAAAGGAGGCATAGGGGATAAAAACTCGGCATATAAGTATGATGAATCTCTAAAAgcatatattaaaatcaaatctaGTGAAGAAAAACAATCAAATGATCAAAAAAAGATCAATCATGAAACTACTACTACTAATACATCCGAGTCTGCAAGTAGTGGTTCTTCATATCAATCGCCAAAAATGCCtagtatattaaaaagaaaattgtcaAGTGGAAATACAAGCGATGACAGTAATGATAAAACTAATAAGCTAGATTTTCATAAATTGAACATTGatttaaaagatataaaaattccaaaactaGATCTTCAAGACCCGGCTAATGTAAAAACAGAAGAAAATGGTGTAATGTATGTTACTGCGAAAGGTTCAAAACCTAATGAAAtgcttttaataaaagtaaagaaaGTAGGCAAAGCAACTGATAAGAAAGGAGATAAAGCACCTGGAAAGAAAAAGTGTGATTTAAGtacaattcataaaataataccACGATATGATTCTACTCCTAGTAAAAAGGATAGTTATATTGAAGAACAAATTGAacagtataaaaagaaaagagttgAAGTTTTAGGAGAGACAGCTATCATGTCAGAAGTGAGTTACAATGAAGAAGAACCAGAAATTAGAGCTGTTGGTGATAGTAATTTAGATGATATACAGACTTATGATCAAGTAGAGGAGGACAATGAAACTACAGAAACTAATCAAGAAGGTGACGATATAACACAAGTTCTTAATAAAATGCCTACTATTGCACCACAATACGCATcacgtttagaaaaaataaagcaGCGTTGGAAAGATGTTAAAAAAAGGCATGATGACATGTATAAAGATCTAGCAGAAGACTGCACTGACAGGTTGAGAGCAGTTTTAAGACAAAAAGATGAATATATACACGAATTTGTCAACTATTTGAAACAACGAAGAATTGTTGTATCACGTTTACAAGATGAAGATATAATTTCTTTatatgaagtaaaaaataatgtagTATTAGAAAGGTTTATACAGTCTCCTCCAGAAGCCCAATTGACTACAGACCCGTTTGAATTTGTACCGATTTTTGAATGTGATTTTTGTGACCTATGTTTTCCAGATAGGGATATGGAATTTGAACATGCAAAAATTCATGACTTCAAGTTAATGCATTATTGTGAAGACTGTAAACAAGAATTTTCTACGCACAAGGCAAAGCGTAGTCATAATATTACATGTGTGCAAAAGCTAATGTGTAGATATTGTGACATTTTACTAGAATCTAAAGGAAAGAAAAGGCAGCATGAACAAAAGCATTGCGACGAACAGAATGGTCAATTGTGTGATTTATGTGGTGAAAAGTTCAAACATCAAGGTACCTTAGATCAGCATGTAAAGTCTCGACATATGcaattagaaaaaatctttAAGTGTCCACAGTGTCCAAAGAAATTTGCATTCAGAACCAAATtaacttttcatttaaaaactGTTCATACCACAACCAGACCTTATTTGTGTGAAGATTGTGGATCTGATTTTAAAAATCCTGCAAGTTTGCGACATCATAGAATACGGAAACATCAgacagtaaataataaaaaagaatgccCTGTCTGTCATAAAATGATTCCTATTTATAGCATGTCAAaacacatgcatacacacaaGTCTTACAGCATTGAATGCCCTCACTGCGacaaaatgttcaaaaatacttCAACTTTAAAACAGCATGTAAGAATACATGAAGAtcaaagacaatacaaatgcgaCATGTGCGGTGTTGGATTTAATAGGCGAGATGGTTTAAGATTACATTTGAAAGTTCATGAAAAATCTGATAGTAGAGGATTGAAAGAATGCTCTTGTCAAGTTTGTGGTGAAAAATTCCCCAATCATTCTATGCTAGTAATTCACAGGAATCGTGCTCACAAAGATGGAAGGAATTATACTTGTCATATATGCAATAGGTCCATGATATCCACTCGGTCATTGGAATGGCACTTATCACATATACACAATGAAACATTGCCAGGTGTAATGAAAGACAACTCCAGCATAGATGCTGAAACAAAGAGAGTGTCTTGTTACCATTGCAATAAAACATTTAAGACTGAAATGATCTTAAGAACCCATGTGAAAAATACACATGTTGAAAAAGAACCTATGAAATGTTTGGACTGTGATTTGATGTTTACTTCTGAAGTTCGTTTAAAGCATCACATGATGGTGTCTCATAATCGTTTGGAAGGAACACTGTCATGCCCCCATTGCCCTAAAAGATTTGTAAATCAATTGAGGCTGAAAACTCACATGATTTCTCATTCAGATGAGAGACCACATACCTGCGATCTTTGTGGTTTTATGTTAAAGACGAAAATACAGCTGATTAAACATAAGCAAAATAGACACAGCAATGAAAGACCATTGCAATGTAAATATTGTTCATGGAGATGTAAACAAGTTAGTGCATTGGTATGTCATGAGAGAACTCACACAAATGAAAGACCTTATAGTTGCAGTGTGTGCAATCAGAAATTCAAGTATTTAGGCGATAAAAATAAGCACGAGAGACGACACGAAAGTCTCGGAGGCACTGGATTTAAGAGGATAGTTACTGGTAGAAATAGTAATAGATCTAATagaaggaaagaagaagattCTGAGCAAGATACTGAACCAGAACAAGAAGAATTCGAAGAATTTGATGAACATATAGAAGGCGAACTGGAAACATTTGAGGAAACGCAAATAATCAAATTCGAAACTAAAGAAATAACTGAAGAATCCGAGGCATCATTTGAacagaTCTATGTAGAAGAAACATCGCAAGATACTAATGATACCGAAGTTGTAATGGGAATGGAAGATACAACAGTTTACACAGAGGAAGTTACTGCAGATCATCTTGAACCAGAAATAATTACGAACGATATGTTGCATGAAGGTATATTACAGCCGGGGACTGTTGTACATCTTCAACAAGAAGACGAAACGGGGAAGATTCAAGTCATACCAGTTATGCTATCTTTGCCAGACTTATCAGATGCCAATTCTGAAACTGGTATAGCGACTGCTTCTATAATGTATAGCAAttaa
Protein Sequence: MSSKVKLLENEDHNYSDLQLEKSENVENVVNMHCKSNIIYSKVSNSGKEKYIGLKITNLSDLKKATPRLKLPAILSSPTVKRTPTVPEEVKQKLHKYCRTCAGLKVPLVDIFSEKGVQMRLSQQIQHLEDINEHDSLSTQMCMDCICDMKMSYKFFMQIKKAEMKLKSLSNSLTDCVIKSNQGNTEYLHKTKNNAELDSSFNDSFKTNSVSDSDEIDTKSEIGNYIYSEMNDPCNDENDFIEEFDPDNPLNTNENNSIKNEESKISLPKGGIGDKNSAYKYDESLKAYIKIKSSEEKQSNDQKKINHETTTTNTSESASSGSSYQSPKMPSILKRKLSSGNTSDDSNDKTNKLDFHKLNIDLKDIKIPKLDLQDPANVKTEENGVMYVTAKGSKPNEMLLIKVKKVGKATDKKGDKAPGKKKCDLSTIHKIIPRYDSTPSKKDSYIEEQIEQYKKKRVEVLGETAIMSEVSYNEEEPEIRAVGDSNLDDIQTYDQVEEDNETTETNQEGDDITQVLNKMPTIAPQYASRLEKIKQRWKDVKKRHDDMYKDLAEDCTDRLRAVLRQKDEYIHEFVNYLKQRRIVVSRLQDEDIISLYEVKNNVVLERFIQSPPEAQLTTDPFEFVPIFECDFCDLCFPDRDMEFEHAKIHDFKLMHYCEDCKQEFSTHKAKRSHNITCVQKLMCRYCDILLESKGKKRQHEQKHCDEQNGQLCDLCGEKFKHQGTLDQHVKSRHMQLEKIFKCPQCPKKFAFRTKLTFHLKTVHTTTRPYLCEDCGSDFKNPASLRHHRIRKHQTVNNKKECPVCHKMIPIYSMSKHMHTHKSYSIECPHCDKMFKNTSTLKQHVRIHEDQRQYKCDMCGVGFNRRDGLRLHLKVHEKSDSRGLKECSCQVCGEKFPNHSMLVIHRNRAHKDGRNYTCHICNRSMISTRSLEWHLSHIHNETLPGVMKDNSSIDAETKRVSCYHCNKTFKTEMILRTHVKNTHVEKEPMKCLDCDLMFTSEVRLKHHMMVSHNRLEGTLSCPHCPKRFVNQLRLKTHMISHSDERPHTCDLCGFMLKTKIQLIKHKQNRHSNERPLQCKYCSWRCKQVSALVCHERTHTNERPYSCSVCNQKFKYLGDKNKHERRHESLGGTGFKRIVTGRNSNRSNRRKEEDSEQDTEPEQEEFEEFDEHIEGELETFEETQIIKFETKEITEESEASFEQIYVEETSQDTNDTEVVMGMEDTTVYTEEVTADHLEPEIITNDMLHEGILQPGTVVHLQQEDETGKIQVIPVMLSLPDLSDANSETGIATASIMYSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00969049;
90% Identity: iTF_00969049;
80% Identity: -