Basic Information

Insect: Megastigmus dorsalis
Gene Symbol: gtf3a
Assembly: GCA_900490025.1
Location: UELU01147223.1:39472-43471[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.23 28 6.2 1.1 1 23 626 648 626 648 0.86

2 16 0.31 38 5.8 2.4 1 19 654 672 654 675 0.89

3 16 0.0012 0.15 13.3 1.6 3 23 711 732 710 732 0.97

4 16 0.0012 0.15 13.3 2.2 1 23 739 762 739 762 0.98

5 16 0.00031 0.039 15.2 1.1 1 23 768 791 768 791 0.94

6 16 3 3.7e+02 2.6 2.3 2 23 799 819 798 819 0.93

7 16 7e-07 8.6e-05 23.5 1.8 2 23 825 846 824 846 0.97

8 16 9.6e-06 0.0012 19.9 0.2 1 23 852 874 852 874 0.99

9 16 0.00056 0.069 14.4 2.0 2 23 886 908 885 908 0.95

10 16 0.025 3.1 9.2 2.3 1 23 914 937 914 937 0.95

11 16 0.034 4.2 8.8 2.9 2 23 959 981 958 981 0.93

12 16 0.00053 0.065 14.5 1.2 2 23 988 1010 987 1010 0.96

13 16 5.2e-05 0.0064 17.6 1.6 2 23 1018 1039 1017 1039 0.96

14 16 0.0085 1.1 10.7 2.5 1 23 1045 1068 1045 1068 0.95

15 16 0.37 46 5.5 4.3 2 23 1075 1096 1074 1096 0.96

16 16 0.0025 0.31 12.3 2.4 1 23 1102 1124 1102 1124 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.23	28	6.2	1.1	1	23	626	648	626	648	0.86
2	16	0.31	38	5.8	2.4	1	19	654	672	654	675	0.89
3	16	0.0012	0.15	13.3	1.6	3	23	711	732	710	732	0.97
4	16	0.0012	0.15	13.3	2.2	1	23	739	762	739	762	0.98
5	16	0.00031	0.039	15.2	1.1	1	23	768	791	768	791	0.94
6	16	3	3.7e+02	2.6	2.3	2	23	799	819	798	819	0.93
7	16	7e-07	8.6e-05	23.5	1.8	2	23	825	846	824	846	0.97
8	16	9.6e-06	0.0012	19.9	0.2	1	23	852	874	852	874	0.99
9	16	0.00056	0.069	14.4	2.0	2	23	886	908	885	908	0.95
10	16	0.025	3.1	9.2	2.3	1	23	914	937	914	937	0.95
11	16	0.034	4.2	8.8	2.9	2	23	959	981	958	981	0.93
12	16	0.00053	0.065	14.5	1.2	2	23	988	1010	987	1010	0.96
13	16	5.2e-05	0.0064	17.6	1.6	2	23	1018	1039	1017	1039	0.96
14	16	0.0085	1.1	10.7	2.5	1	23	1045	1068	1045	1068	0.95
15	16	0.37	46	5.5	4.3	2	23	1075	1096	1074	1096	0.96
16	16	0.0025	0.31	12.3	2.4	1	23	1102	1124	1102	1124	0.98

Sequence Information

Coding Sequence: ATGTCGAGTAAAGTGAAATTACTGGAAAATGAAGATCACAATTATAGTGATCTTCAATTGGAGAAATCAGAAAATGTAGAGAATGTTGTACATATGCATTGTAAAAGTAACATTATATACTCGAAAGTATCGAATTCAGGAAAAGAGAAATATATTGgcttaaaaataacaaatcttaGTGATTTGAAAAAAGCAACTCCTCGTCTAAAGTTGCCTGCAATACTGTCATCACCAACTGTTAAAAGAACTCCAACAGTGCCTGAAGAAGTTAAGCAAAAATTGCATAAGTACTGCCGTACTTGTGCAGGATTAAAAGTTCcattaattgatatttttagtGAAAAAGGAGTCCAAATGAGACTTAGTCAGCAAATACAACATTTAGAAGACATTAATGAACATGATAGTTTATCCACGCAAATGTGCATGGACTGTATATGTGATATGAAAATGAGTTACAAATTTTTCATGCAAATTAAGAAAGCCGAAATGAAGTTGAAATCACTTAGCAATTCACTTACTGATGGtgtaataaaatcaaatcaagGAAACACTGAATATTTAcctaaaaccaaaaataatgcaGAGCTTGACTCTTCATTCAATGATTCATTTAAAACAAGTAGTGTGAGCGATTCTGATGAAATAGACACAAAATCTGAAATAGGAAATTATACCTATTCAGAAATGAATGACCCTTGTAACgatgaaaatgattttattgaagAGTTTGATCCTGATAATCCTCTtaatacaaatgaaaataatcCAATTAAAAATGAAGAATCTAAAATTTCTTTACCAAAAGGAGACATAGGGGATAAAAACTCGGCGTATAAGTATGATGAATCTCTAAAAgcatatattaaaatcaaatctAGTGAAGAAAAACAATCAAATGATCAAAAAAAGATCAATCATGAAACTACTACTAATACATCCGAGTCTGCAAGTAGTGGTTCTTCATATCAATCGCCAAAAATGCctagtatattaaaaagaaaattgtcaAGTGGAAATACAAGCGATGACAGTAATGATAAAACTAATAAGCTAGATTTTCATAAATTGAACATTGATTTAAAAGATATCAAAATTCCAAAACTAGATCTTCAAGACCCTGCTAATATAAAAACAGAAGAAAATGGTGTAATGTATGTTACTGCGAAAGGTTCAAAACCTAATGAAATgcttttaataaaagtaaagaaaGTAGGCAAAGCAACTGATAAGAAAGGAGATAAAGCACCTGGAAAGAAAAAGTGTGATTTAAGTacaattcataaaataataccaCGATATGATTCTGCTCCTAGTAAAAAGGATAGTTATATTGAAGAACAAATTGAacagtataaaaagaaaagagttgAAGTTTTAGGAGAGACAGCTATCATGTCAGAAGTGAGTTACAATGAAGAAGAACCAGAAATTAGAGCTGTTGGTAATAGTAATTTAGATGATATACAGACTTATGATCAAGTAGAGGAGGACAATGAAACTACAGAAACTAATCAAGAGGGTGATGATATAACACCAGTTCTCAATGAAATACCTACTATTGCACCGCAATATGCATcacgtttagaaaaaataaagcaaCGTTGGAAAGATGTTAAAAAAAGACATGATGACATGTATAAAGATCTAGCAGAAGACTGCACTGACAGGTTGAGAGCAGTTTTAAGGCAAAAAGATGAATATATACACGAATTTGTCAACTATTTGAAACAACGAAGAATTGTTGTATCACGTTTACAAGATGAagatataatttctttatatgaagtaaaaaataatgtagtATTGGAAAGGTTTATACAGGCTCCTCCAGAAGATCCAGTGACTACAGACCCTTTTGAATTTGTACCGATTTTTGAATGTGATTTTTGTGACCTATGTTTTCCAGATAGGGATATGGAATTTGAACATGCAAAAATTCATGACTTCAAGTTAATGCATTATTGTGAAGACTGTAAACAAGAATTTTCTACGCACAAGGCAAAGCGCAGTCATAATATTACATGTGTACAAAAGCTAATGTGTAGATATTGTGATATGTTACTAGAATCTAAAGGAAAGAAAAGGCAGCATGAACAAAAGCATTGCGACGAACAGAATGGTCAATTGTGTGATTTATGTGGTGAAAAGTTCAAACATCAAGGTACCTTAGATCAGCATGTAAAGTCTCGACATATGCAATTAGAAAAAATCTTTAAGTGTCCACAGTGTCCAAAGAAATTTGCATTCAGAACCAAATtaacttttcatttaaaaactgtTCATACCACAACCAGACCTTATTTGTGTGAAGATTGTGGATCTGATTTTAAAAATCCTGCAAGTTTGCGACATCATAGAATACGGAAACATCAGacagtaaataataaaaaagaatgtccTGTCTGTCATAAAATGATTCCTATTTACAGCATGTCAAAACACATGCATACCCACAAGTCTTACAGCATTGAATGCCCTCACTGCGAcaaaatgttcaaaaatacTTCAACTTTAAAACAGCATGTAAGAATACATGAAGATCAAAGACAATACAAATGCGACATGTGCGGTGTTGGATTTAATAGGCGAGATGGTTTACGATTGCATTTGAAAGTTCATGAAAAATCTGATAGTAGAGGACTGAAAGAATGCTCTTGTCAAGTTTGTGGTGAAAAATTCCCCAATCATTCTATGCTAGTAATTCACAGGAATCGTGCTCACAAAGATGGAAGGAATTATACTTGTCATATATGCAATAGGTCCATGATATCCACTCGATCATTGGAATGGCACTTATCACATATACACAATGAAACATTGCCAGGTGTAATGAAAGACAACTCCAGTATAGATGCTGAAACAAAGAGAGTGTCTTGTTACCATTGCAATAAAACATTTAAGACTGAAATGATCTTGAGAACCCATGTGAAAAATACACATGTTGAAAAAGAACCTATGAAATGTTTGGACTGTGATTTGATGTTTACTTCTGAAGTTCGTTTAAAGCATCATATGATGGTGTCTCATAATCGTTTGGAAGGAACACTGTCATGCCCCCATTGTCCTAAAAGATTTGTAAATCAATTGAGGCTAAAAACTCACATGATTTCTCATTCAGATGAGAGACCACATACCTGCGATCTTTGTGGCTTTATGTTAAAGACGAAAATACAGCTGATTAAACATAAGCAAAATAGACACAGCAATGAAAGACCATTGCAATGTAAATATTGTTCATGGAGATGTAAACAAGTTAGTGCATTGGTATGTCATGAGAGAACTCACACAAATGAAAGACCTTATAGTTGCAGTGTGTGCAATCAGAAATTCAAGTATTTAGGCGATAAAAATAAGCACGAGAGACGACACGAAAGTCTCGGAGGCACTGGATTTAAGAGGATAGTTACTGGTAGAAACAGTAATAGATCTAATAGAAGGAAAGAAGAAGATTCTGAGCAAGATACTGAACCAGAACAAGAAGAATTTGAAGAATTTGATGAACATATAGAAGGCGAACTGGAAACATTTGAGGAACCACAAATAATCAAATTCGAAGCTAGAGAAATAACTGAAGAATCCGAGGCATCATTTGaacagatcTATGTAGAAGAAACATCGCAAGATACTAATGATACCGAAGTTGTAATGGGAATGGAAGATACAACAGTTTACACAGAGGAAGTTACTGCAGATCATCTTGAACCAGAAATAATTACGAACGATATGTTGCATGAAGGTATGTTACAGCCGGGGACTGTTGTACATCTTCAACAAGAAGACGAAACGGGGAAGATTCAAGTCATACCAGTTATGCTATCTTTGCCAGACTTATCAGATGCCAATTCTGAAACTGGTATAGCGACTGCTTCTATAATGTATAGCAATtga
Protein Sequence: MSSKVKLLENEDHNYSDLQLEKSENVENVVHMHCKSNIIYSKVSNSGKEKYIGLKITNLSDLKKATPRLKLPAILSSPTVKRTPTVPEEVKQKLHKYCRTCAGLKVPLIDIFSEKGVQMRLSQQIQHLEDINEHDSLSTQMCMDCICDMKMSYKFFMQIKKAEMKLKSLSNSLTDGVIKSNQGNTEYLPKTKNNAELDSSFNDSFKTSSVSDSDEIDTKSEIGNYTYSEMNDPCNDENDFIEEFDPDNPLNTNENNPIKNEESKISLPKGDIGDKNSAYKYDESLKAYIKIKSSEEKQSNDQKKINHETTTNTSESASSGSSYQSPKMPSILKRKLSSGNTSDDSNDKTNKLDFHKLNIDLKDIKIPKLDLQDPANIKTEENGVMYVTAKGSKPNEMLLIKVKKVGKATDKKGDKAPGKKKCDLSTIHKIIPRYDSAPSKKDSYIEEQIEQYKKKRVEVLGETAIMSEVSYNEEEPEIRAVGNSNLDDIQTYDQVEEDNETTETNQEGDDITPVLNEIPTIAPQYASRLEKIKQRWKDVKKRHDDMYKDLAEDCTDRLRAVLRQKDEYIHEFVNYLKQRRIVVSRLQDEDIISLYEVKNNVVLERFIQAPPEDPVTTDPFEFVPIFECDFCDLCFPDRDMEFEHAKIHDFKLMHYCEDCKQEFSTHKAKRSHNITCVQKLMCRYCDMLLESKGKKRQHEQKHCDEQNGQLCDLCGEKFKHQGTLDQHVKSRHMQLEKIFKCPQCPKKFAFRTKLTFHLKTVHTTTRPYLCEDCGSDFKNPASLRHHRIRKHQTVNNKKECPVCHKMIPIYSMSKHMHTHKSYSIECPHCDKMFKNTSTLKQHVRIHEDQRQYKCDMCGVGFNRRDGLRLHLKVHEKSDSRGLKECSCQVCGEKFPNHSMLVIHRNRAHKDGRNYTCHICNRSMISTRSLEWHLSHIHNETLPGVMKDNSSIDAETKRVSCYHCNKTFKTEMILRTHVKNTHVEKEPMKCLDCDLMFTSEVRLKHHMMVSHNRLEGTLSCPHCPKRFVNQLRLKTHMISHSDERPHTCDLCGFMLKTKIQLIKHKQNRHSNERPLQCKYCSWRCKQVSALVCHERTHTNERPYSCSVCNQKFKYLGDKNKHERRHESLGGTGFKRIVTGRNSNRSNRRKEEDSEQDTEPEQEEFEEFDEHIEGELETFEEPQIIKFEAREITEESEASFEQIYVEETSQDTNDTEVVMGMEDTTVYTEEVTADHLEPEIITNDMLHEGMLQPGTVVHLQQEDETGKIQVIPVMLSLPDLSDANSETGIATASIMYSN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00969863;
90% Identity: iTF_00969863;
80% Identity: -