Mdol016999.2
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- lrrfip2
- Assembly
- GCA_963854835.1
- Location
- OY978527.1:62810006-62818345[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-115 3.5e-111 372.2 29.9 1 299 271 565 271 566 0.91 2 2 0.18 2e+03 -1.3 4.4 216 245 591 619 569 639 0.53
Sequence Information
- Coding Sequence
- ATGGACAGCAGCAGTGCTGTGGGAAGGCGTCGAGGTAATTCACGCGTAAATGCTGAGGATCAGGCATTGGATCAAATTGCAAAAGAAGAGAATATCGGAATGTCGGAAGCACACGTAAATAGCGTTACTACATCCACAGTCACAGAAGAGGCGATAATCAATAGTACGAACAAAACAACGGCACCACAAaataacgacgacgacaacaataataatgatgaaatcATCAGCGAGAAGTTTGAgtttagtgaaaatattttgacacaaCTCCTCAACGATGACAACAATGACGTATTCAAGGATTCAGGTGCAGCCACTATGGCAGACAACACAAAAGGCGTTGCCGCAATACCCGAGACCACTGCCGATAATAACGATGATGCTGCAAGGCCATCAATTACAGCAACCAAAGATGAAATTGTATCCTCAACATCTGACCATGAAgccaataatagcaacaatagtGCCATTACTAAAATGCCTGATGGGCAACAACAAGCTAAATCTAAATTAACCAATTTAGATTTATCTGTAAACACAACACCACCACTACCATTAATATCGTCTGATGATACCACCTCTTCATTTTGTCCTATAACACCAAAGAAAATTATTGATGTTGATGAGGATGAAAACGAAACCGATAAGATGTGTcaactgaagaagaaaaagcatgCTGCTGCATCGGATAATATTGAAGACAACCATAATGATGacgccgatgatgatgatgatgatgccgatCAGTACGAAGATGCGGTATCTGACAATGAAATGTTGGTGCAATTCTTGGGAGAAGCCAATCGTATTGCTGAAGCAAGATTAGCGGCCCGACGACAGGCACGTGCTGAGGCTCGCGAAATACGTATGCGTGAATTGGAGCGCCAACAGAAGGAACAAGAACAAAATGCCGATCGCGCATTCGATATGCATACTGTGGCTGGCATTGATCCTCTGTCTAGATCACGGCTAGCAACGGGTATCGGCGGTTCAACAATCAGTGGCTTACTGAATTCTACACGTGGTAATTCTATGTCATCGCGTCGCAGTAGTGAAGATTCACTAGAAGAAGAGGGACGCAGTCTACGAGATATTCGACATGAACTCAAAGATGTTGAGGAACGGTTTCGTAAAGCGATGATTGCGAATGCACAATTAGATAATGAGCGCTCATCACAAAGCTATCAGATTCAGCTGCTGAAGGATAAACTGGAAGAGATGGAAGAGTCGTATGCACAGTTACAGCGTGAATTTAAGGATAAGTCACGCGATTGCAATGCGTTAAAACGTAATTTAGATAAATTGCAAGAGGAGCTAAAACTTGTACAGGGGCAATTGAGCGAACGTGATGCGCTCATTGGCGAACAGGGTCTAGTTATAGTCGTTGTTGAAAATGAAGATGGTACAGATGCCAAGCGTGCTCTAGTCAGTGTTGAGAATGCTCAACTTTTAGGTTCTGTACAGGGATCTTTAGatgTTCGGCTTAAGAAATTCAATGAGGAAAAACAACAGCTGATGACGGAAGTACAACAATTGCAGGAGCAATTGGAGAACTACAAAAGTCAAGGCAAAAATCGCGGTAATTCATTAAATGGTCCTATCGGATCTGATGAAGAATACGAAGCGCAAAGAGaagctaataaaataatttcggattataaatataaattgcaaaagGCTGAACAAGAAATAGCTAGTCTTCAAGCCAGCTTAGCGCGTTCGGAGACACAAGTAATACGTTATAAAAGTACAGCTGAAGCTGCTGAAAAAGCTGAAGCCGAATTAAAAATTGAACGAAGAAAACTGCAACGGGAAAATCGCGAGGTCATGGAACGTCTTGAAGAATTGGAAACATCGaataatcatttattaaaaCGTTTGGATAagttaaaaaatgcaaaaagtgCACTACTCAAAGATCTCtga
- Protein Sequence
- MDSSSAVGRRRGNSRVNAEDQALDQIAKEENIGMSEAHVNSVTTSTVTEEAIINSTNKTTAPQNNDDDNNNNDEIISEKFEFSENILTQLLNDDNNDVFKDSGAATMADNTKGVAAIPETTADNNDDAARPSITATKDEIVSSTSDHEANNSNNSAITKMPDGQQQAKSKLTNLDLSVNTTPPLPLISSDDTTSSFCPITPKKIIDVDEDENETDKMCQLKKKKHAAASDNIEDNHNDDADDDDDDADQYEDAVSDNEMLVQFLGEANRIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRAFDMHTVAGIDPLSRSRLATGIGGSTISGLLNSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERSSQSYQIQLLKDKLEEMEESYAQLQREFKDKSRDCNALKRNLDKLQEELKLVQGQLSERDALIGEQGLVIVVVENEDGTDAKRALVSVENAQLLGSVQGSLDVRLKKFNEEKQQLMTEVQQLQEQLENYKSQGKNRGNSLNGPIGSDEEYEAQREANKIISDYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREVMERLEELETSNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -