Mdol007925.1
Basic Information
- Insect
- Megamerina dolium
- Gene Symbol
- -
- Assembly
- GCA_963854835.1
- Location
- OY978525.1:120459909-120468845[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 8.7e-11 1.4e-07 32.0 0.0 1 38 591 629 591 634 0.89 2 4 2.7e-13 4.4e-10 40.0 0.0 2 39 646 683 645 686 0.94 3 4 3.2e-17 5.3e-14 52.6 0.0 1 45 700 745 700 745 0.98 4 4 1.8e-19 2.9e-16 59.8 0.0 1 43 752 795 752 797 0.96
Sequence Information
- Coding Sequence
- ATGGTTTTCTTAGCACCATCGTTATTACCATCACGACCTCCAACCGCTGGTATACGACTGACTgGTTTGCTTCGCACAGCTGAGCAGTTAAAAATTAAAGGTCTTTGTGAAACAGCCGAAAACGCTGATGATTTAAACGACGCCGCCACAGCGACAATCACAGTATCTGAAAATATACAACAGGCAGTTGTTGGTAATATTGTTACAACAACTGTGGGTACGCCTGGTAGTATCTCACCGAATacacatcaacaacagcagcagcagcagcagcaacagcatcatcaacagcagcaacagcatcagcaacaccagcaacagcaacagcagcaccaacaacagcagcaacagcatcatcatcagcagcagcagcagcagcaccaacagcaacaacagatTGCATTAGCAAATTCCGGTACGATATTGGCACACGGTATTGCAAACGTCAACGCTGCCAACGCTCAACAATTAGCAGCCGCTGCTGTAGCAGCTGGTGGTCAATTGATTGCAACCGGTCCAGCATCAGGAACAACACAACAGCAGATTGCACGTAAATCCCGCGTACGTAAACGTTCTAAATCGCCCGAtttgcagcaacagcagcatcagcagcatcaacaacacgCACATCAGCAACAGCATCCTCAGACGATActaatacaaaatcaaaatcaagcCGCCATTGTTTCGCTCCAACAAACATCATCCGGTAGCTATATACCCGTTTCGGGTGTACAAACGGTGACGACAAGTGGCGTTGTCGCTGGCCAACATCATACCACAACGattggtgctggtggtggtggtggtggtgacgaTTCCGATACCGATAAGCCCCTATTGCAGAAAATCTGCAAAATTGAAGCAGCATCTGCTTCGCCTGCATCCACATCATCCGGTTCGGCATCGAATAATGCCGGTGGCGTAACCACCGTTGCAACAGCACCTGGCACCGCAATTGTCACACAAATTGTAGTAGCACGCGACggaaaagataaaaatatgaCTAGTTTAGGCATGGGCATGAATGGTGGAATACTTGGTGTGCCTATGGGATTTTTAGATTTTGCACCTGAACCACCAGCACCATCAGCTACACCGGTTACCGTTACTGAACACGTCGACTTATCTTGCAATCCCAGCACTGACACCCGTGATTTATCAAATCCCACCGAACCGCTTGATATCGACAATCATTTAGCCCAGCATATGATACAACGGCTCGAACAATCCCCAATGCATACTATACATCATCAAACTGGCGATGAGAGCAATTCCAACTTGGTGCAGCACATCAAAAGTGAAGTCATCGAGGCGAaacagcaccagcagcaacaacaacagcagcagcatgttcaacagcaacatcaacagtcacaacagcagcagcatcatcagtTGCATGCTCAACAATTGGCGCAAGGACAAtcccaacaacagcaacatcagcaacagcaggcGCATCAACAACAAGCgcaccagcagcaacaacatgtcGTTGCGCAACAACAAACGCACCAAGAGATCTCTGGTGCGACCGTAATGGAAATTGATCCGAGCCAAATAAAACACGAACCCGGCATGATAATAACGCCAGAGATAGTCAACATGATGACCACTGGGCATATGGatatgtataattCAGATACGAGTGAGGACTCAATGATGATCGCAAACGGTTCACCGAACGATCAAAATGAGCCACATTACACCAATCTGGACCAACAACATGGCGATAACAAAGGTCAGTTTAATGGTCCCAAAACTTGGACACAAGATGATATGAATTCAGCTTTAGATGCATTAAAGAATCAAAATATGAGCCTGACGAAAGCATCCGTTACATACGGCATCCCGTCGACCACTCTCTGGCAACGTGCCCATCGTATGGGCATCGAAACGCCAAAGAAGGAGGGCGGCACCAAATCATGGAATGAAGATTCGCTTAATAATGCCTTGGAAGCATTACGCTCTGGACAGATATCAGCGAACAAGGCATCAAAAGCCTTTGGTATACCCTCATCGACGCTATATAAGATAGCACGTCGTGAGGGTATTCGCTTGGCGGCACCCTTCAATGCCGCACCAACAACATGGACACCTGAAGATTTGGAGCGCGCATTGGAGGCAATACGTGCCGGTCATACGTCCGTCCAGAAAGCGAGTGCTGAATTTGGCATACCAACAGGGACACTTTATGGACGTTGCAAACGTGAGGGCATCGAATTATCTCGCTCGAATCCAACACCATGGTCTGAGGATGCCATGAATGAAGCTTTAAATTCAGTACGaGTTGGTCAAATGTCTATTAATCAAGCGGCCATACACTATAATTTACCATACAGTTCACTTTATGGACGCTTTAAGCGCGGCAAATATGATGTGGCTAATACAAGTGGCACCTCCATCAATAATACCTCGGGCAATACATCGGGTAGCATTGAAATTATCGAACACAGTCAAGAGAATTCGTTGCACATGTTTCAGCAACAGTTCCAGTATAGTCCATCGCCGCATCAGCAACAACACAGTGCTGGcggacagcaacaacaacaacaacagcagcagcagcagccacaaaCAACGCAACATTTGCAACAGCACGTCGTTCAcattcagcagcagcagcaacaaccgcaacaacagcagcagcatcaccaACAACATATCCAGCAACAGCATAGCGGTGATGTCGTTGTAACATCGAGCAGCAGCAGTCAACAAATTCAACaaatttatcatcatcatagtaCACCGGAAAGAAGTTGA
- Protein Sequence
- MVFLAPSLLPSRPPTAGIRLTGLLRTAEQLKIKGLCETAENADDLNDAATATITVSENIQQAVVGNIVTTTVGTPGSISPNTHQQQQQQQQQQHHQQQQQHQQHQQQQQQHQQQQQQHHHQQQQQQHQQQQQIALANSGTILAHGIANVNAANAQQLAAAAVAAGGQLIATGPASGTTQQQIARKSRVRKRSKSPDLQQQQHQQHQQHAHQQQHPQTILIQNQNQAAIVSLQQTSSGSYIPVSGVQTVTTSGVVAGQHHTTTIGAGGGGGGDDSDTDKPLLQKICKIEAASASPASTSSGSASNNAGGVTTVATAPGTAIVTQIVVARDGKDKNMTSLGMGMNGGILGVPMGFLDFAPEPPAPSATPVTVTEHVDLSCNPSTDTRDLSNPTEPLDIDNHLAQHMIQRLEQSPMHTIHHQTGDESNSNLVQHIKSEVIEAKQHQQQQQQQQHVQQQHQQSQQQQHHQLHAQQLAQGQSQQQQHQQQQAHQQQAHQQQQHVVAQQQTHQEISGATVMEIDPSQIKHEPGMIITPEIVNMMTTGHMDMYNSDTSEDSMMIANGSPNDQNEPHYTNLDQQHGDNKGQFNGPKTWTQDDMNSALDALKNQNMSLTKASVTYGIPSTTLWQRAHRMGIETPKKEGGTKSWNEDSLNNALEALRSGQISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWTPEDLERALEAIRAGHTSVQKASAEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMNEALNSVRVGQMSINQAAIHYNLPYSSLYGRFKRGKYDVANTSGTSINNTSGNTSGSIEIIEHSQENSLHMFQQQFQYSPSPHQQQHSAGGQQQQQQQQQQQPQTTQHLQQHVVHIQQQQQQPQQQQQHHQQHIQQQHSGDVVVTSSSSSQQIQQIYHHHSTPERS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00979276;
- 90% Identity
- -
- 80% Identity
- -