Basic Information

Gene Symbol
-
Assembly
GCA_034642435.1
Location
CM067857.1:62366354-62390389[+]

Transcription Factor Domain

TF Family
LRRFIP
Domain
LRRFIP domain
PFAM
PF09738
TF Group
Unclassified Structure
Description
LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 1.4e-11 1.9e-07 31.8 13.9 20 91 1 60 1 199 0.84
2 5 0.35 4.9e+03 -2.3 0.2 233 258 373 398 364 420 0.72
3 5 1.7 2.3e+04 -4.5 1.7 167 239 736 808 699 828 0.56
4 5 0.65 9e+03 -3.2 0.1 13 32 1098 1117 1095 1135 0.87
5 5 1.8e-51 2.4e-47 162.8 12.5 58 222 1674 1840 1648 1842 0.89

Sequence Information

Coding Sequence
ATGAGAGAGCTGGAGAAGCAACAGAAGGAACAAGAGGAGAATGCCGATCGGCAATTCGACATGTTGGCCGAACCTGTTGCCAGAACTGCAAGGACGAGCATCAGCAGATACATGTCGAGCCGAAGGAGTTCTGAGGATTCCCTCGAGGACGGAGGCAGTCTCAGAGAATTGAGAGTGAGTTTTTTAACCATGGGGTGTTTTAATACAACGCTAGACTTACtACGATCAAGAGAAGGCTTGAACATCATCAATGATGTGTTACTAAGAGAAGCTAATGAGAGGAATATGGTTAGTGAAGCCGCTACCAAAATTTTAGAGGCAGCAAAAATGCTGAAAGATGTCATGGAAGGGGCTAAGTCGATGGTGGAAACATTAGGTCAAATAGCCAGAGACAACGTAGAAGCGGAGAGGACTCGCCTGAAAATCCTGACTGCAAAAAACCGTGGTTCTGCTCAAACCAGCCCGCTAAAGAGGAAAATAGATGAGGAAGAGGGCTCTTCTGGAAAGAAAATTGCGTTGGCAAATAAAGATgtttcgaaagaaaataaagaggTAGAGCACTTGAAGAAGGTGGTGGAACAGGAATTGCTTTCTACCAAAATAGTCATCAAGAGAGACTATAAGCTCTCTAAAGAAAGCAATTTCGATATCTGGATGGACTATCTCAGGTCAGAATTAACATGTAATGATATCCTTGATGTCATCGAACCCAGCAACGATGGTGCTTGCTCTAGATCGGAGGCAAGCACACTAAAGAGGAAGAATTGGGTTCGAGACATCATCATTAACCGTTTAGATGAAAATTACCATAAGAAGGTGGTTAATGTTAGAGAGCCCATGGAGATTATTAAAATCTTGAGAAGCTCCAGAAAGTGTGAGAGTAATATCACTCACACTTCTGTGAGATCTCGGCTATATGCCATTAAGATGAATAAGGGCGAAACGGTTAATGACTTCTGCGATAGGTTCGACTCCATCGTGAGGGAGTATGAAACCTGTGAGGATGTTATTGCATTGACCACTCAAGAGATCAGATCAGCATTTTATCAGGCAGTTTCCCCGGTGATACCGGAACTAAGGAATGCTGATCTGATAAAGAGGCAGACCACTTCAATGGAGATGACTCTAGAGgagataaaatcatttatctccCAATTAGAAGCAGAGAAAAACTCTGAGAAGAAAGAGTCATCTCCGAAACTTCAGAGAGTAGTTGGACCTAAATTAAGATGTTTTAGATGTAATAAAGAAGGTCATAGGTCCAACGAATGCTTCCTGAAGCAGCAGAATAAGTGGTTCTGCTATAGGTGCCAGTCCATCAAGAGCCATAGAGGTGATGAGTGCACCAACACAATTTCTAAGAAGACGTCCAATGCCTCATCTAAGCGAAACGGGAACTTGAAAAAGAAGAGGTTTGAGCACAACCGGGTTAACAGGAGGGAGGTGGTAAGAACACAAATGAAGGCTCGAAGAGCTTCAGGGATTGTTCAAAAAACCCCAGGTGAGTGCTATTCCAATGATTTTATTAGTTTTGTTGCTGACTCTGGAGCTACTGATCATATAGTAAATGATCAATTGTTTCTGAGTAATTTTAAGAGGTTAGAGAACAAAACAATTAAGAgtgcaaataaaaatcaaatagcTGACATTGAAATAGATGGTAAAGGAgatcttattttatatacagaTCCAATTAAGAGTAAGAGTTTAAGATTGTTAAATGTACTTTCTGCTAAAGATGTGTCCGAGAATCTGCTGTCACTTCGAAGGTTAGCAGATTcgggacttaaaatttatttagatgataGAGTTTTGAAAGTTCATGATGGACGAACCAATAAGATTGTTTTAGAGGGAGAATATGAAAAACCTAATTGGATTCTAAACTTCAAAGTGAAAAAGCCGAACCAGATTCAGCTGAACGATGAAGTAGAATATGACCATTATTGCTGCAGAGCAGTAATGTTCAAAGAGAATGAGACGTCTGGACAATCACAGAAATCCAATAAAGAGGTAGAGTTATTAAATTCGGAGGGAGAACCTGAAATAGAAGTATCCCATTCTGTGATTGGGAGGGAGGAAGACGAACATCTCATTTCTCTCTTAGACGAGAAGGTTCTCAAAACCTCAACTGAAGAAGTAGAATCGGAAAAACCTCTAGATGAAATAAAGAATTGGGATTGTAGTTCGAAGAATAGAAATGTAGTAAAATTAGATGACTTAGATGAACTACAAAACTTAGAGGAACTATTCATTAATAATCCTTTAGAAGACGATATTAATCGAACTAAGAGTTTCAACGAAGCCATGCTATGGCACTTAAGATTAGGTCATGCTTCTGTGAACTATCTGAAAAAGCTGCAAAAGCTAGATAAGAGGTTGGAAAAAGTCATATTTGACGATTCCATATTAGAATGCGAAGTTTGTATCATGTCAAAGATGCAAAAACTGCCTTTCAAAGAGACTCGTAAAAGAGCCGAAAGACCACTTCAGGTCATACATACTGACATTATGGGTCCGATTACACAAAAATCTCACCCTGGACAAAAGAGGTTCATTAATGTCTATGTAGATGATTACTCAAGATTAGCTAGAGCTTATTGTTTGAGAACTAAAGATGAATCAGGCGAAGCattagaaaaattcctaatatccACTCGTAATCTATTAGGCCATAACGAGAAGGTATGTTATATCAGATCTGATCAAGGCACTGAATTTACTGGAAGAAAATTCTTAGATGTATTAAAGAGAGAAAATATCGAAACTGATTTCACACCACCTTATACACCTGAACATAACGGGGTATCTGAAAGATTTAATGCAACCATACAAAGAAAAGTGAGAGCTTACATGTTTGATTCTGGACTACCCAAGAGTATGTGGGAGTTAGCTGTCGATGCTGCTGTGCACGCATACAACAGAACACCACATAAATCTATAGAGTATGAAACACCTTTAACAAGATTTGCATCAAATTCTAGATGTCATTTTGATCAAATCAGAAGGTTTGGATgtataacatacatcaaaattccCAAGCCCAATCTGAAATTTGGAGAACGTGCATTGAAAGCTGTCCTCGTGGGGTATACTTCCACGGGATACTTGATATGGCACCCAAGCTCAAAGAAATTCTTTGAGTCAAGACATGTTAGATTTAACGAGAAACTTGTCTATAAAGATGTTTATAAAAGAGATCCTTTAGAAGAATTAAACAACTCTCCAACTTTAGATGACAAAACAGATTGGGATTGGATGAAAGATTGTAGAGGTGAAACTAAAGAGAATATAGAAGCACCAAacataaagatgagaaaaagaggtagaccaagaaaagaatccaaacagTTAGAGTTACCGAAAGGTATAGTCGACAAGGTTTTCGAAAAACCATGCACTAGAAGCTCACTAAAGAGACCattagaagaaaacaaaaaggTTGTAGATGATATTAGTTATGCTAAATACTTATATGTTTTAGATAACCCTTTAGATGAAAACTTTAGAGATGCTGAAAAAGAAGACGAATTGAGGAGATGCCTCTTGGCCACTTTGAACAGAGAACCATTAAATTATAAAGATGCTATAAACTCAAGAGAAGGTAATCTGTGGAAGATGGCGGTCCAAGAGGAAATCAACTCAATGATACAAAATAATGTGTGGAAATtagtcgataaaaataaaattcaagcaGCAAATAAAAGAGCGAATATCATAGATTCGAAGTGGGTATTTAAAAGGAAACTAGAATTAGATGGTGCAACTCGATATAAAGCACGACTAGTTATTAGAGGCTTCAAAGATAAGAATAAGTATGATTTAAAAGATACTTACGCACCAGTCTCTAGACTTCCAGTCATTAGAGCTGTGTTTGCAATAATAAACAAGTTTGACTTGTATGCCTGTCAATTAGATGTTAAGACAGCGTTCCTTAATGGAACTTtagatgaagaaatattcatggaaattccagatggtttagaggtagatttggaaataaaaaattcgaaggtATGCAAATTAGAGAAAGCATTATATGGCTTGAAAATAAGCCCAAAAAGATGGAATCAGAGGTTCACAGAAGAAGCCAAAAAGCTTGGATTAGAAAATGACCTACACGAACCATGTCTATATACCTGGAGGAAAAATGGGAAAATGGCAATACTAGTtatatacgtagacgatattctagtAGCCACTAACGATGAAAATAAACTCCAGGAAATTAAGAGTCACTTGGGTAATGCATTCGATATGAAAGATCTTGGAGAACCGAAAAGTTTTCTAGGCATTAATGTTGAAAGAAACAAACTTAAGAAGTATACGATGTTAAATCAATCCACATATACGATGAGTATTTTAGAGAGATTCAACATGATCGAATGCAACCCACAAAATACACCGATGGTGACAAGACAGGTTCAAAATAGAAAGAAGAGAAATAATTTAGATGTATTAGATGATGACAACAAAGATGATATTAAGATGAAGGTCCCATACAGAGAAGCGATAGGAAGCTTGATGTACTTGGCAAATGGAACACGGCCGGATATAGCATTCGCTGTGAACTATTTGGCAAGAAAACAACTAGCTCCCACTGAAGATGATTGGAAAGAGGTGAaaagaattttcagatacttaagAGGAACTGTTGATTCAGGGTTGAAATATACCACTGAAACAGACAATCTGGAAGCTTACACCGATGCCAGTTTTAGAGACCATATTGACTCAACTTCCACTGGAGGTTATGTTATAAAATTGTTTGGTGATGTTATAGCATGGAGAAGTCACAAACAATCCTATGTTACTCTGTCCACCTGTCAGGCGGAATATCTAGCCATGAGTGACGCATGCCAGGAAGTAATCTCTTTGGATAAAGCTACCCGATTTATGATCGGTAAAACTTTATTTCCTATAACAGTTTATTGCGACAATAAATCTGCTGGAGATTGCACTAAGAAAGATGGTAGTCACAAACTAAAGATGTTCGATGATCAATTAGATGTGATCCATGAAACCTTATTAGAGAGAGAAAGGACTGGATCAAAAAGACATATGGCTGACACACATGGAGATTTTATAAAACAGTGTGTGGAAAAAAAAAGGCACGAACTCAGAGAAGTAGAGGACAAATTTAGGAAAGCTATGATAACTAATGCTCAACTTGATAATGAAAAGGCCGCCCTGACTTATCAAATAGAACTACTTAAAGATAAattaCAAGAATTAGAAGAAGAACAATCTCAATTGAGAAGAGAACATAAAGAGAAGTGTAGAGAGCATGATCAGATGAAGAGGCTATGTACGAAGCTGAAACATGACCTCGAAGTGACAAAAGCCGAATTAGATGAAAGAGATAAACTTATTACAGAACAAGGATTGGTGATAGTTTCTGAAGAGATAGAAGAAACCAATGGTGATATTAGCATGAATAGTATTGGTACTCCCAAAAAGTCATTAGTGAAGGTAGAAAATGCTAAGTTGTTAGAAAATGCTGGTGATGGTACTCTAGGTAAGGAAAGTTCAGTTATTTCTGTActgagaaattctcaaattatgaGCATAGAAATCTTGTAA
Protein Sequence
MRELEKQQKEQEENADRQFDMLAEPVARTARTSISRYMSSRRSSEDSLEDGGSLRELRVSFLTMGCFNTTLDLLRSREGLNIINDVLLREANERNMVSEAATKILEAAKMLKDVMEGAKSMVETLGQIARDNVEAERTRLKILTAKNRGSAQTSPLKRKIDEEEGSSGKKIALANKDVSKENKEVEHLKKVVEQELLSTKIVIKRDYKLSKESNFDIWMDYLRSELTCNDILDVIEPSNDGACSRSEASTLKRKNWVRDIIINRLDENYHKKVVNVREPMEIIKILRSSRKCESNITHTSVRSRLYAIKMNKGETVNDFCDRFDSIVREYETCEDVIALTTQEIRSAFYQAVSPVIPELRNADLIKRQTTSMEMTLEEIKSFISQLEAEKNSEKKESSPKLQRVVGPKLRCFRCNKEGHRSNECFLKQQNKWFCYRCQSIKSHRGDECTNTISKKTSNASSKRNGNLKKKRFEHNRVNRREVVRTQMKARRASGIVQKTPGECYSNDFISFVADSGATDHIVNDQLFLSNFKRLENKTIKSANKNQIADIEIDGKGDLILYTDPIKSKSLRLLNVLSAKDVSENLLSLRRLADSGLKIYLDDRVLKVHDGRTNKIVLEGEYEKPNWILNFKVKKPNQIQLNDEVEYDHYCCRAVMFKENETSGQSQKSNKEVELLNSEGEPEIEVSHSVIGREEDEHLISLLDEKVLKTSTEEVESEKPLDEIKNWDCSSKNRNVVKLDDLDELQNLEELFINNPLEDDINRTKSFNEAMLWHLRLGHASVNYLKKLQKLDKRLEKVIFDDSILECEVCIMSKMQKLPFKETRKRAERPLQVIHTDIMGPITQKSHPGQKRFINVYVDDYSRLARAYCLRTKDESGEALEKFLISTRNLLGHNEKVCYIRSDQGTEFTGRKFLDVLKRENIETDFTPPYTPEHNGVSERFNATIQRKVRAYMFDSGLPKSMWELAVDAAVHAYNRTPHKSIEYETPLTRFASNSRCHFDQIRRFGCITYIKIPKPNLKFGERALKAVLVGYTSTGYLIWHPSSKKFFESRHVRFNEKLVYKDVYKRDPLEELNNSPTLDDKTDWDWMKDCRGETKENIEAPNIKMRKRGRPRKESKQLELPKGIVDKVFEKPCTRSSLKRPLEENKKVVDDISYAKYLYVLDNPLDENFRDAEKEDELRRCLLATLNREPLNYKDAINSREGNLWKMAVQEEINSMIQNNVWKLVDKNKIQAANKRANIIDSKWVFKRKLELDGATRYKARLVIRGFKDKNKYDLKDTYAPVSRLPVIRAVFAIINKFDLYACQLDVKTAFLNGTLDEEIFMEIPDGLEVDLEIKNSKVCKLEKALYGLKISPKRWNQRFTEEAKKLGLENDLHEPCLYTWRKNGKMAILVIYVDDILVATNDENKLQEIKSHLGNAFDMKDLGEPKSFLGINVERNKLKKYTMLNQSTYTMSILERFNMIECNPQNTPMVTRQVQNRKKRNNLDVLDDDNKDDIKMKVPYREAIGSLMYLANGTRPDIAFAVNYLARKQLAPTEDDWKEVKRIFRYLRGTVDSGLKYTTETDNLEAYTDASFRDHIDSTSTGGYVIKLFGDVIAWRSHKQSYVTLSTCQAEYLAMSDACQEVISLDKATRFMIGKTLFPITVYCDNKSAGDCTKKDGSHKLKMFDDQLDVIHETLLERERTGSKRHMADTHGDFIKQCVEKKRHELREVEDKFRKAMITNAQLDNEKAALTYQIELLKDKLQELEEEQSQLRREHKEKCREHDQMKRLCTKLKHDLEVTKAELDERDKLITEQGLVIVSEEIEETNGDISMNSIGTPKKSLVKVENAKLLENAGDGTLGKESSVISVLRNSQIMSIEIL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-